RchiOBHm_Chr3g0453671
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
4032728 .. 4042055
9328 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1476 bp
ATGGGCAGCAGAGAAAGCATAGAAGGAGGAGAGTTAGCAAGTCCTCTGCTTGACGTGGCTGGCGGCCGGAACAGCGGTGGTGATGACGTTGGTGGAAGTAGTAGAAGTGGGACTGGAAGTGGAAGTGAAAATTCTTCAGCCACAAGTATGGTTGTACTCAGCACCTTGGTTGCTGTGTCTGGTTCCTATGTTTTTGGCTCTGCGGTGGGATACTCCTCACCTGCTCGGTCAGGAATCATGGATGATTTGGGCCTCTCTGTTGCTGAGTACTCGGTTTTCGGTTCAATATTGACAATTGGAGCAATGATAGGCGCAGTAGTGAGTGGGAAAATGGCAGATTACATAGGTAGAAGAGGTACTATGGGATTTTCACAGATAGTCTGCATATTTGGATGGCTAGCCATAGCTCTCTCTAAGGTTGCTTGGTGGGCTGATCTTGGAAGACTATTGGTAGGATGTGGAATGGGGCTACTTTCTTATGTGGTGCCTATATACATAGCAGAAATAACACCAAAGAATCTGCGGGGAGGATTTACGACAGTTCATCAGTTGATGATATGTTGTGGTGTTTCACTAACATATCTTATTGGGGCTTTTGTGAACTGGCGAGCTTTGGCACTGATCGGAACTATTCCTTGTGTTGTACAGATTTTAGGTCTCTTCTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAAATAGGTAAAGAGAAAGAGGGGGAAGCAGCTCTTCAGCACCTGAGGGGGAAGAATGCTGATACTTCTGGAGAAGCAGCTGAGATTAGAGATTATACAAAAACTCTGAAGCTTCTCTCAGAAGCAAGCATTCTTGACTTATTTCAGTGGAGATATGCTCATTCCCTCCTTGTCGGAGTTGGCCTGATGGTACTTCAACAATTTGGAGGGGTTAATGGCATTGCCTTCTATGCAAGTACCATATTCATTTCAGCTGGGTTCTCTGATAGTATAGGGACTATAGCTATGGTTGCTGTTCAGATTCCGATGACAGCTTTGGGTGTAGTTTTAATGGACAAATCTGGAAGACGTCCACTTCTTCTGGTATCTTCAGCAGGAACATGCTTAGGTTGCCTCTTTGTGGGATTGTCATTCTTGTTGAAGGACCTTCAAGGATGGAGTCAGGTCACCCCCATATTCGCTCTTGTTGGCATACTGGTATATACAGGATCATTCTCATTAGGCATGGGAGGAATTCCTTGGGTTATAATGTCGGAGATATTTCCTATAAACATGAAAGGCTCGGCCGGAAGCCTGGTGACATTGGTTAGCTGGTTAGGTTCTTGGATTGTGTCATATGCATTTAATTTCCTAATGGATTGGAATTCAGCAGGGACATTCTTCATGTTTTCAAGCATATGTGGAGTAACTGTTTTATTTGTTGCAAAGCTTGTACCGGAGACAAAGGGGCGAACACTTGAAGAAATACAGGCCTCTATGAATCCGTTTTCTGTAAAGCGATAA

Protein Analysis

491

Amino Acids

51.86

Weight (kDa)

7.51

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 67 - 330 1.5e-20 Major Facilitator Superfamily
Sugar_tr PF00083 76 - 482 1.3e-90 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1220
AarI CACCTGC 1 cut(s) 229
AatII GACGTC 1 cut(s) 1045
Acc36I ACCTGC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 484
AciI CCGC 4 cut(s) 63, 75, 203, 523
AclWI GGATC 1 cut(s) 1189
AcoI YGGCCR 2 cut(s) 64, 1257
AcsI RAATTY 3 cut(s) 130, 1206, 1336
AcuI CTGAAG 4 cut(s) 120, 713, 821, 1047
AcyI GRCGYC 1 cut(s) 1042
AfaI GTAC 7 cut(s) 156, 269, 358, 645, 885, 931, 1407
AfiI CCNNNNNNNGG 1 cut(s) 1093
AgsI TTSAA 6 cut(s) 285, 890, 1114, 1124, 1365, 1433
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 1266
Alw26I GTCTC 3 cut(s) 662, 681, 1406
AlwI GGATC 1 cut(s) 1189
AlwNI CAGNNNCTG 1 cut(s) 736
AoxI GGCC 5 cut(s) 64, 250, 874, 1257, 1443
ApeKI GCWGC 3 cut(s) 6, 722, 770
ApoI RAATTY 3 cut(s) 130, 1206, 1336
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 250, 1117
AsuHPI GGTGA 4 cut(s) 92, 210, 1132, 1282
AsuNHI GCTAGC 1 cut(s) 397
AvaII GGWCC 1 cut(s) 1117
AxyI CCTNAGG 1 cut(s) 737
BanI GGYRCC 1 cut(s) 484
BbsI GAAGAC 2 cut(s) 448, 1045
BbvI GCAGC 3 cut(s) 18, 734, 782
BccI CCATC 4 cut(s) 387, 678, 874, 1122
BciT130I CCWGG 1 cut(s) 1268
BciVI GTATCC 1 cut(s) 203
BcoDI GTCTC 3 cut(s) 662, 681, 1406
BfaI CTAG 2 cut(s) 398, 681
BfmI CTRYAG 1 cut(s) 972
BfuAI ACCTGC 1 cut(s) 229
BfuI GTATCC 1 cut(s) 203
BisI GCNGC 4 cut(s) 7, 64, 723, 771
BlsI GCNGC 4 cut(s) 8, 65, 724, 772
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 1268
Bme18I GGWCC 1 cut(s) 1117
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 250, 1117
BmiI GGNNCC 2 cut(s) 184, 486
BmrFI CCNGG 1 cut(s) 1268
BmtI GCTAGC 1 cut(s) 401
BpiI GAAGAC 2 cut(s) 448, 1045
BplI GAGNNNNNCTC 2 cut(s) 835, 867
BpmI CTGGAG 1 cut(s) 783
Bpu10I CCTNAGC 1 cut(s) 1078
BsaHI GRCGYC 1 cut(s) 1042
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 2 cut(s) 165, 1211
BsaWI WCCGGW 1 cut(s) 1408
BsaXI ACNNNNNCTCC 2 cut(s) 1368, 1398
Bsc4I CCNNNNNNNGG 1 cut(s) 1093
Bse1I ACTGG 3 cut(s) 118, 608, 1173
Bse21I CCTNAGG 1 cut(s) 737
Bse3DI GCAATG 2 cut(s) 309, 912
BseBI CCWGG 1 cut(s) 1268
BseDI CCNNGG 2 cut(s) 165, 1211
BseGI GGATG 4 cut(s) 247, 398, 461, 1133
BseLI CCNNNNNNNGG 1 cut(s) 1093
BseMI GCAATG 2 cut(s) 309, 912
BseMII CTCAG 5 cut(s) 172, 255, 728, 765, 825
BseNI ACTGG 3 cut(s) 118, 608, 1173
BseRI GAGGAG 2 cut(s) 42, 205
BseX3I CGGCCG 2 cut(s) 64, 1257
BseXI GCAGC 3 cut(s) 18, 734, 782
BseYI CCCAGC 1 cut(s) 947
Bsh1285I CGRYCG 2 cut(s) 67, 1260
BshFI GGCC 5 cut(s) 66, 252, 876, 1259, 1445
BshNI GGYRCC 1 cut(s) 484
BsiEI CGRYCG 2 cut(s) 67, 1260
BsiSI CCGG 3 cut(s) 67, 1260, 1409
BslFI GGGAC 3 cut(s) 124, 982, 1360
BslI CCNNNNNNNGG 1 cut(s) 1093
BsmAI GTCTC 3 cut(s) 662, 681, 1406
BsmFI GGGAC 3 cut(s) 124, 982, 1360
BsmI GAATGC 2 cut(s) 754, 822
BsnI GGCC 5 cut(s) 66, 252, 876, 1259, 1445
Bso31I GGTCTC 1 cut(s) 662
Bsp1407I TGTACA 1 cut(s) 643
Bsp143I GATC 3 cut(s) 433, 621, 1181
BspACI CCGC 4 cut(s) 63, 75, 203, 523
BspANI GGCC 5 cut(s) 66, 252, 876, 1259, 1445
BspCNI CTCAG 5 cut(s) 171, 256, 729, 766, 824
BspLI GGNNCC 2 cut(s) 184, 486
BspMI ACCTGC 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 1189
BspQI GCTCTTC 1 cut(s) 732
BspT107I GGYRCC 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 309, 912
BsrGI TGTACA 1 cut(s) 643
BsrI ACTGG 3 cut(s) 118, 608, 1173
BssECI CCNNGG 2 cut(s) 165, 1211
BssMI GATC 3 cut(s) 433, 621, 1181
BssNI GRCGYC 1 cut(s) 1042
BssT1I CCWWGG 2 cut(s) 165, 1211
Bst2UI CCWGG 1 cut(s) 1268
Bst4CI ACNGT 2 cut(s) 541, 1384
Bst6I CTCTTC 3 cut(s) 346, 665, 732
BstACI GRCGYC 1 cut(s) 1042
BstAUI TGTACA 1 cut(s) 643
BstC8I GCNNGC 5 cut(s) 61, 399, 609, 690, 820
BstDEI CTNAG 7 cut(s) 158, 264, 414, 737, 774, 811, 1078
BstEII GGTNACC 1 cut(s) 1138
BstF5I GGATG 4 cut(s) 247, 398, 461, 1133
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 3 cut(s) 436, 624, 1184
BstMAI GTCTC 3 cut(s) 662, 681, 1406
BstMBI GATC 3 cut(s) 433, 621, 1181
BstMCI CGRYCG 2 cut(s) 67, 1260
BstMWI GCNNNNNNNGC 6 cut(s) 15, 72, 428, 923, 983, 1083
BstNI CCWGG 1 cut(s) 1268
BstNSI RCATGY 1 cut(s) 1077
BstPI GGTNACC 1 cut(s) 1138
BstSCI CCNGG 1 cut(s) 1266
BstSFI CTRYAG 1 cut(s) 972
BstV1I GCAGC 3 cut(s) 18, 734, 782
BstV2I GAAGAC 2 cut(s) 448, 1045
BstXI CCANNNNNNTGG 1 cut(s) 148
BstZI CGGCCG 2 cut(s) 64, 1257
Bsu36I CCTNAGG 1 cut(s) 737
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 5 cut(s) 66, 252, 876, 1259, 1445
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 4 cut(s) 247, 398, 461, 1133
BtsIMutI CAGTG 2 cut(s) 617, 845
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 5 cut(s) 61, 399, 609, 690, 820
CaiI CAGNNNCTG 1 cut(s) 736
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 250, 1117
Csp6I GTAC 7 cut(s) 155, 268, 357, 644, 884, 930, 1406
CviAII CATG 5 cut(s) 238, 1074, 1198, 1246, 1357
CviQI GTAC 7 cut(s) 155, 268, 357, 644, 884, 930, 1406
DdeI CTNAG 7 cut(s) 158, 264, 414, 737, 774, 811, 1078
DpnI GATC 3 cut(s) 435, 623, 1183
DpnII GATC 3 cut(s) 433, 621, 1181
EaeI YGGCCR 2 cut(s) 64, 1257
EagI CGGCCG 2 cut(s) 64, 1257
Eam1104I CTCTTC 3 cut(s) 346, 665, 732
EarI CTCTTC 3 cut(s) 346, 665, 732
EclXI CGGCCG 2 cut(s) 64, 1257
Eco130I CCWWGG 2 cut(s) 165, 1211
Eco147I AGGCCT 1 cut(s) 1445
Eco31I GGTCTC 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 1117
Eco52I CGGCCG 2 cut(s) 64, 1257
Eco57I CTGAAG 4 cut(s) 120, 713, 821, 1047
Eco81I CCTNAGG 1 cut(s) 737
Eco91I GGTNACC 1 cut(s) 1138
EcoO109I RGGNCCY 1 cut(s) 1117
EcoO65I GGTNACC 1 cut(s) 1138
EcoRI GAATTC 2 cut(s) 1206, 1336
EcoRII CCWGG 1 cut(s) 1266
EcoT14I CCWWGG 2 cut(s) 165, 1211
EcoT22I ATGCAT 1 cut(s) 1315
ErhI CCWWGG 2 cut(s) 165, 1211
FaeI CATG 5 cut(s) 241, 1077, 1201, 1249, 1360
FalI AAGNNNNNCTT 2 cut(s) 711, 743
FaqI GGGAC 3 cut(s) 124, 982, 1360
FatI CATG 5 cut(s) 237, 1073, 1197, 1245, 1356
FauI CCCGC 1 cut(s) 516
FauNDI CATATG 2 cut(s) 1309, 1370
Fnu4HI GCNGC 4 cut(s) 7, 64, 723, 771
FokI GGATG 4 cut(s) 254, 405, 468, 1140
Fsp4HI GCNGC 4 cut(s) 7, 64, 723, 771
FspBI CTAG 2 cut(s) 398, 681
GlaI GCGC 1 cut(s) 313
GluI GCNGC 4 cut(s) 7, 64, 723, 771
GsaI CCCAGC 1 cut(s) 951
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 5 cut(s) 66, 252, 876, 1259, 1445
HapII CCGG 3 cut(s) 67, 1260, 1409
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 1042
Hin1II CATG 5 cut(s) 241, 1077, 1201, 1249, 1360
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 2 cut(s) 803, 1400
HinfI GANTC 6 cut(s) 234, 517, 674, 994, 1132, 1453
HpaII CCGG 3 cut(s) 67, 1260, 1409
HphI GGTGA 4 cut(s) 92, 210, 1132, 1282
Hpy166II GTNNAC 2 cut(s) 601, 1046
Hpy188I TCNGA 8 cut(s) 626, 801, 814, 869, 958, 993, 999, 1228
Hpy188III TCNNGA 5 cut(s) 231, 671, 762, 827, 1035
Hpy8I GTNNAC 2 cut(s) 601, 1046
HpyAV CCTTC 4 cut(s) 17, 928, 1108, 1130
HpyCH4III ACNGT 2 cut(s) 541, 1384
HpyCH4IV ACGT 3 cut(s) 54, 87, 1042
HpyCH4V TGCA 4 cut(s) 384, 926, 1313, 1397
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 72, 428, 923, 983, 1083
HpyF3I CTNAG 7 cut(s) 158, 264, 414, 737, 774, 811, 1078
HpySE526I ACGT 3 cut(s) 54, 87, 1042
Hsp92I GRCGYC 1 cut(s) 1042
Hsp92II CATG 5 cut(s) 241, 1077, 1201, 1249, 1360
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 3 cut(s) 433, 621, 1181
LguI GCTCTTC 1 cut(s) 732
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 3 cut(s) 18, 734, 782
MaeI CTAG 2 cut(s) 398, 681
MaeII ACGT 3 cut(s) 54, 87, 1042
MaeIII GTNAC 3 cut(s) 1138, 1270, 1378
MalI GATC 3 cut(s) 435, 623, 1183
MboI GATC 3 cut(s) 433, 621, 1181
MfeI CAATTG 1 cut(s) 294
MluCI AATT 6 cut(s) 130, 294, 893, 1206, 1318, 1336
MlyI GAGTC 2 cut(s) 683, 1141
MmeI TCCRAC 2 cut(s) 847, 1206
Mph1103I ATGCAT 1 cut(s) 1315
MseI TTAA 3 cut(s) 906, 1022, 1317
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 3 cut(s) 75, 773, 947
MspI CCGG 3 cut(s) 67, 1260, 1409
MspR9I CCNGG 1 cut(s) 1268
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 2 cut(s) 754, 822
MvaI CCWGG 1 cut(s) 1268
MwoI GCNNNNNNNGC 6 cut(s) 15, 72, 428, 923, 983, 1083
NdeI CATATG 2 cut(s) 1309, 1370
NdeII GATC 3 cut(s) 433, 621, 1181
NheI GCTAGC 1 cut(s) 397
NlaIII CATG 5 cut(s) 241, 1077, 1201, 1249, 1360
NlaIV GGNNCC 2 cut(s) 184, 486
NmeAIII GCCGAG 1 cut(s) 1235
NmuCI GTSAC 2 cut(s) 1138, 1270
NsiI ATGCAT 1 cut(s) 1315
NspI RCATGY 1 cut(s) 1077
PaqCI CACCTGC 1 cut(s) 229
PceI AGGCCT 1 cut(s) 1445
PciSI GCTCTTC 1 cut(s) 732
PctI GAATGC 2 cut(s) 754, 822
PfeI GAWTC 4 cut(s) 234, 517, 994, 1453
PkrI GCNGC 4 cut(s) 8, 65, 724, 772
PleI GAGTC 2 cut(s) 682, 1140
PpsI GAGTC 2 cut(s) 682, 1140
PpuMI RGGWCCY 1 cut(s) 1117
PsiI TTATAA 1 cut(s) 1220
Psp5II RGGWCCY 1 cut(s) 1117
Psp6I CCWGG 1 cut(s) 1266
PspEI GGTNACC 1 cut(s) 1138
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 1 cut(s) 1266
PspN4I GGNNCC 2 cut(s) 184, 486
PspPI GGNCC 2 cut(s) 250, 1117
PspPPI RGGWCCY 1 cut(s) 1117
PstNI CAGNNNCTG 1 cut(s) 736
PvuII CAGCTG 2 cut(s) 773, 947
RsaI GTAC 7 cut(s) 156, 269, 358, 645, 885, 931, 1407
RsaNI GTAC 7 cut(s) 155, 268, 357, 644, 884, 930, 1406
RseI CAYNNNNRTG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 732
SaqAI TTAA 3 cut(s) 906, 1022, 1317
SatI GCNGC 4 cut(s) 7, 64, 723, 771
Sau3AI GATC 3 cut(s) 433, 621, 1181
Sau96I GGNCC 2 cut(s) 250, 1117
ScaI AGTACT 1 cut(s) 269
SchI GAGTC 2 cut(s) 683, 1141
ScrFI CCNGG 1 cut(s) 1268
SfcI CTRYAG 1 cut(s) 972
SinI GGWCC 1 cut(s) 1117
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 6 cut(s) 130, 294, 893, 1206, 1318, 1336
SseBI AGGCCT 1 cut(s) 1445
SsiI CCGC 4 cut(s) 63, 75, 203, 523
SspI AATATT 1 cut(s) 288
SspMI CTAG 2 cut(s) 398, 681
StuI AGGCCT 1 cut(s) 1445
StyD4I CCNGG 1 cut(s) 1266
StyI CCWWGG 2 cut(s) 165, 1211
TaaI ACNGT 2 cut(s) 541, 1384
TaiI ACGT 3 cut(s) 57, 90, 1045
TaqII GACCGA 1 cut(s) 216
TasI AATT 6 cut(s) 130, 294, 893, 1206, 1318, 1336
TatI WGTACW 3 cut(s) 154, 267, 643
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 4 cut(s) 234, 517, 994, 1453
Tru1I TTAA 3 cut(s) 906, 1022, 1317
Tru9I TTAA 3 cut(s) 906, 1022, 1317
TscAI CASTG 2 cut(s) 624, 845
TseFI GTSAC 2 cut(s) 1138, 1270
TseI GCWGC 3 cut(s) 6, 722, 770
Tsp45I GTSAC 2 cut(s) 1138, 1270
TspDTI ATGAA 6 cut(s) 533, 655, 928, 1262, 1345, 1466
TspGWI ACGGA 1 cut(s) 1446
TspRI CASTG 2 cut(s) 624, 845
VpaK11BI GGWCC 1 cut(s) 1117
XapI RAATTY 3 cut(s) 130, 1206, 1336
XceI RCATGY 1 cut(s) 1077
XspI CTAG 2 cut(s) 398, 681
ZraI GACGTC 1 cut(s) 1043
ZrmI AGTACT 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.