RchiOBHm_Chr3g0454301

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012048
Physical Location & Seq
Forward (+)
4462024 .. 4465258
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1269 bp
ATGGCCGCCGTCACCCTCCTCGCCCTCGGCAACGGCGCCCCCGACGTCTTCGCCTCCCTCGCCGCCGTCCGCCGCGGCAACTACCGCACCGGCTTCGGCGCCATCCTCTCCGCCGGCACCTTCGTCTCCGCCTTCGTCGTCGGCTTCGTCGCGATCCACGCCGCGCCCTTCTCCCTCACCCCGGCCACGTTCGTCAGGGACGTCATGTTCTACCTGATCTCGGCCACGTTTCTGTTCTACGTGTATCTGAGCGCCGAGATTTATCTGTGGCAGGCGGTGGGGTTCGTCGGGTTTTACTTGTTCTTTGTGGGGTTTGTGTTCTGGATGGACTTGGGGTTGGGCGGAGGAGGAGGAGGAGGGAAGAGGAGCCGGAGTGAGGTGGCGGTGGGTGCTGAGAGTGAAATGCACAAGGGCTTTGTGGAATTGGATTGCGAGATCGGAGAAGTTGAGAAAAGATCAGAGGAGGGGAAGCCGAGTTTCGGGGTCCGGCGAGCTCTGGAAATGGTCTCAAAAGTATGGGAGGTTCCGGTCTCGATTCTTCTGAAGCTGACAATTCCACAAGCTGCCCCGTCGGAATGGAGTAGATTCTACACATCAGCCAATATTGCTCTATGCCCTCTAGCACTTCTATATTCTTGCAACTCGTTCATGGAATTCAATCATCCTGTAGCTTTTCTTCTTTCCAACACCCATCTTCCACTATGGTTTGTTGTATTCTTGGCAAGCTCCTCTCTTGCACTTCTTCATTATATAATAGAGAAAGAGCCCCCCAAAACTGAGCAAATTCCTGTATTGCTTATAGCATTTGTTATGAGTGTCTTTTGGATATCCACTACTGCTGGAGAATTGTTGAACTGCCTTGCTGCACTTGGAGCACTTCTGGAGTTGCCACCAGCACTTCTTGGGCTTACGGTTCTTGCCTGGGGAAATTCTGTGGGGGATCTTGTTGCTGATGTGGCACTTGCCAAGGCAGGCCACCCTGCATTGGCCATGGCGGGGTGCTTTGCCGGGCCAATGTTTAACATGCTTGTAGGCCTTGGAACAGCGTTGGTGATACAGACCTCCAATGTTTATCCGGAAGCCTATGAGCTCCAGTTCCATGTGGGTATCGTGATTGCATTTGTGTTCTTGCTTTTGAGCCTGATGGGTTCTCTATTGGTGATCACATGGTGCAGATTCCGGGTGCCTAGGTTCTGGGGGTTCTGTCTTGTTGGTCTCTATGTTATCTTCATGGCAGTTAGCTTACTGATTGCCAAGTTTTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034220 GO:0034399 GO:0035725 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055085 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098655 GO:0098660 GO:0098662 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

422

Amino Acids

45.66

Weight (kDa)

5.99

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 2 - 108 1.3e-14 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 265 - 415 1.5e-29 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08960
fragaria_vesca FvH4_6g05530 FvH4_6g05530 FvH4_6g05530
malus_domestica MD04G1207600.v1.1 MD12G1221900.v1.1
prunus_persica Prupe.6G328600_v2.0.a1
pyrus_communis pycom04g18380 pycom12g20800
rosa_chinensis RchiOBHm_Chr3g0454301
rosa_laevigata RLG00000025464
rosa_multiflora Rmu_sc0001340.1_g000003
rosa_roxburghii Rroxscaffold_165G00437120
rosa_rugosa Rorug02G0654100
rosa_samantha Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200
rosa_wichuraiana Rw3G004440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 48, 204
AccB1I GGYRCC 4 cut(s) 35, 98, 116, 1183
AccII CGCG 3 cut(s) 75, 152, 164
AccIII TCCGGA 1 cut(s) 1075
AclWI GGATC 2 cut(s) 148, 948
AcoI YGGCCR 4 cut(s) 3, 183, 222, 987
AcsI RAATTY 3 cut(s) 653, 783, 928
AcuI CTGAAG 1 cut(s) 563
AcyI GRCGYC 4 cut(s) 36, 45, 99, 201
AdeI CACNNNGTG 1 cut(s) 1170
AfiI CCNNNNNNNGG 6 cut(s) 181, 220, 376, 479, 985, 996
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 2 cut(s) 658, 853
AjnI CCWGG 1 cut(s) 920
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 7 cut(s) 494, 547, 563, 671, 726, 1090, 1242
AluI AGCT 7 cut(s) 494, 547, 563, 671, 726, 1090, 1242
Alw21I GWGCWC 3 cut(s) 496, 877, 1092
Alw26I GTCTC 4 cut(s) 130, 511, 535, 1220
AlwI GGATC 2 cut(s) 148, 948
Aor13HI TCCGGA 1 cut(s) 1075
AoxI GGCC 7 cut(s) 3, 183, 222, 973, 987, 1010, 1033
ApeKI GCWGC 2 cut(s) 563, 863
ApoI RAATTY 3 cut(s) 653, 783, 928
AspA2I CCTAGG 1 cut(s) 1187
AspLEI GCGC 4 cut(s) 38, 101, 166, 254
AspS9I GGNCC 2 cut(s) 484, 1010
AsuC2I CCSGG 4 cut(s) 182, 1009, 1181, 1264
AsuHPI GGTGA 4 cut(s) 4, 169, 1063, 1171
AvaII GGWCC 1 cut(s) 484
AvrII CCTAGG 1 cut(s) 1187
BalI TGGCCA 1 cut(s) 989
BanI GGYRCC 4 cut(s) 35, 98, 116, 1183
BanII GRGCYC 3 cut(s) 496, 768, 1092
BarI GAAGNNNNNNTAC 2 cut(s) 660, 692
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 3 cut(s) 496, 877, 1092
BbvI GCAGC 2 cut(s) 550, 850
BccI CCATC 4 cut(s) 110, 319, 699, 1138
BceAI ACGGC 2 cut(s) 49, 50
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 1 cut(s) 922
BclI TGATCA 1 cut(s) 1161
BcnI CCSGG 4 cut(s) 182, 1009, 1181, 1264
BcoDI GTCTC 4 cut(s) 130, 511, 535, 1220
BfaI CTAG 2 cut(s) 620, 1188
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 3 cut(s) 39, 102, 255
BisI GCNGC 7 cut(s) 6, 63, 73, 76, 162, 564, 864
BlnI CCTAGG 1 cut(s) 1187
BlsI GCNGC 7 cut(s) 7, 64, 74, 77, 163, 565, 865
Bme1390I CCNGG 5 cut(s) 182, 922, 1009, 1181, 1264
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 484, 1010
BmiI GGNNCC 7 cut(s) 37, 100, 118, 368, 485, 525, 1185
BmrFI CCNGG 5 cut(s) 182, 922, 1009, 1181, 1264
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 3 cut(s) 861, 902, 1076
BpuMI CCSGG 4 cut(s) 182, 1009, 1181, 1264
BsaAI YACGTR 1 cut(s) 241
BsaHI GRCGYC 4 cut(s) 36, 45, 99, 201
BsaI GGTCTC 3 cut(s) 511, 535, 1220
BsaJI CCNNGG 8 cut(s) 25, 73, 180, 921, 966, 990, 1036, 1187
BsaWI WCCGGW 2 cut(s) 526, 1075
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 6 cut(s) 181, 220, 376, 479, 985, 996
Bse118I RCCGGY 2 cut(s) 89, 113
Bse1I ACTGG 1 cut(s) 1093
BseAI TCCGGA 1 cut(s) 1075
BseBI CCWGG 1 cut(s) 922
BseDI CCNNGG 8 cut(s) 25, 73, 180, 921, 966, 990, 1036, 1187
BseGI GGATG 3 cut(s) 102, 330, 661
BseLI CCNNNNNNNGG 6 cut(s) 181, 220, 376, 479, 985, 996
BseMII CTCAG 3 cut(s) 239, 384, 768
BseNI ACTGG 1 cut(s) 1093
BseRI GAGGAG 8 cut(s) 8, 360, 363, 366, 369, 379, 476, 718
BseXI GCAGC 2 cut(s) 550, 850
BsgI GTGCAG 2 cut(s) 849, 1192
Bsh1236I CGCG 3 cut(s) 75, 152, 164
BshFI GGCC 7 cut(s) 5, 185, 224, 975, 989, 1012, 1035
BshNI GGYRCC 4 cut(s) 35, 98, 116, 1183
BsiHKAI GWGCWC 3 cut(s) 496, 877, 1092
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 6 cut(s) 181, 220, 376, 479, 985, 996
BsmAI GTCTC 4 cut(s) 130, 511, 535, 1220
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 7 cut(s) 5, 185, 224, 975, 989, 1012, 1035
Bso31I GGTCTC 3 cut(s) 511, 535, 1220
Bsp1286I GDGCHC 4 cut(s) 496, 768, 877, 1092
Bsp13I TCCGGA 1 cut(s) 1075
Bsp143I GATC 6 cut(s) 153, 216, 435, 455, 940, 1161
Bsp19I CCATGG 1 cut(s) 990
Bsp68I TCGCGA 1 cut(s) 152
BspANI GGCC 7 cut(s) 5, 185, 224, 975, 989, 1012, 1035
BspCNI CTCAG 3 cut(s) 240, 385, 769
BspEI TCCGGA 1 cut(s) 1075
BspFNI CGCG 3 cut(s) 75, 152, 164
BspLI GGNNCC 7 cut(s) 37, 100, 118, 368, 485, 525, 1185
BspPI GGATC 2 cut(s) 148, 948
BspT107I GGYRCC 4 cut(s) 35, 98, 116, 1183
BspTNI GGTCTC 3 cut(s) 511, 535, 1220
BsrFI RCCGGY 2 cut(s) 89, 113
BsrI ACTGG 1 cut(s) 1093
BssAI RCCGGY 2 cut(s) 89, 113
BssECI CCNNGG 8 cut(s) 25, 73, 180, 921, 966, 990, 1036, 1187
BssMI GATC 6 cut(s) 153, 216, 435, 455, 940, 1161
BssNI GRCGYC 4 cut(s) 36, 45, 99, 201
BssT1I CCWWGG 4 cut(s) 966, 990, 1036, 1187
Bst2UI CCWGG 1 cut(s) 922
Bst4CI ACNGT 1 cut(s) 913
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 4 cut(s) 36, 45, 99, 201
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 5 cut(s) 115, 273, 492, 724, 973
BstDEI CTNAG 3 cut(s) 248, 393, 777
BstDSI CCRYGG 2 cut(s) 73, 990
BstF5I GGATG 3 cut(s) 102, 330, 661
BstFNI CGCG 3 cut(s) 75, 152, 164
BstH2I RGCGCY 3 cut(s) 39, 102, 255
BstHHI GCGC 4 cut(s) 38, 101, 166, 254
BstKTI GATC 6 cut(s) 156, 219, 438, 458, 943, 1164
BstMAI GTCTC 4 cut(s) 130, 511, 535, 1220
BstMBI GATC 6 cut(s) 153, 216, 435, 455, 940, 1161
BstMWI GCNNNNNNNGC 7 cut(s) 59, 84, 158, 389, 605, 872, 956
BstNI CCWGG 1 cut(s) 922
BstNSI RCATGY 1 cut(s) 1027
BstSCI CCNGG 5 cut(s) 180, 920, 1007, 1179, 1262
BstSFI CTRYAG 1 cut(s) 666
BstUI CGCG 3 cut(s) 75, 152, 164
BstV1I GCAGC 2 cut(s) 550, 850
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 940
BstYI RGATCY 1 cut(s) 940
BsuRI GGCC 7 cut(s) 5, 185, 224, 975, 989, 1012, 1035
BtgI CCRYGG 2 cut(s) 73, 990
BtsCI GGATG 3 cut(s) 102, 330, 661
BtuMI TCGCGA 1 cut(s) 152
Cac8I GCNNGC 5 cut(s) 115, 273, 492, 724, 973
CfoI GCGC 4 cut(s) 38, 101, 166, 254
Cfr10I RCCGGY 2 cut(s) 89, 113
Cfr13I GGNCC 2 cut(s) 484, 1010
Cfr42I CCGCGG 1 cut(s) 76
CviAII CATG 7 cut(s) 205, 649, 991, 1024, 1100, 1167, 1231
DdeI CTNAG 3 cut(s) 248, 393, 777
DinI GGCGCC 2 cut(s) 37, 100
DpnI GATC 6 cut(s) 155, 218, 437, 457, 942, 1163
DpnII GATC 6 cut(s) 153, 216, 435, 455, 940, 1161
DraIII CACNNNGTG 1 cut(s) 1170
EaeI YGGCCR 4 cut(s) 3, 183, 222, 987
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
EciI GGCGGA 4 cut(s) 59, 100, 118, 357
Ecl136II GAGCTC 2 cut(s) 494, 1090
Eco130I CCWWGG 4 cut(s) 966, 990, 1036, 1187
Eco147I AGGCCT 1 cut(s) 1035
Eco24I GRGCYC 3 cut(s) 496, 768, 1092
Eco31I GGTCTC 3 cut(s) 511, 535, 1220
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 484
Eco53kI GAGCTC 2 cut(s) 494, 1090
Eco57I CTGAAG 1 cut(s) 563
EcoICRI GAGCTC 2 cut(s) 494, 1090
EcoRI GAATTC 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 920
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 4 cut(s) 966, 990, 1036, 1187
EcoT38I GRGCYC 3 cut(s) 496, 768, 1092
EgeI GGCGCC 2 cut(s) 37, 100
EheI GGCGCC 2 cut(s) 37, 100
ErhI CCWWGG 4 cut(s) 966, 990, 1036, 1187
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 7 cut(s) 208, 652, 994, 1027, 1103, 1170, 1234
FaqI GGGAC 1 cut(s) 212
FatI CATG 7 cut(s) 204, 648, 990, 1023, 1099, 1166, 1230
FauI CCCGC 1 cut(s) 988
FbaI TGATCA 1 cut(s) 1161
Fnu4HI GCNGC 7 cut(s) 6, 63, 73, 76, 162, 564, 864
FokI GGATG 3 cut(s) 89, 337, 648
FriOI GRGCYC 3 cut(s) 496, 768, 1092
Fsp4HI GCNGC 7 cut(s) 6, 63, 73, 76, 162, 564, 864
FspBI CTAG 2 cut(s) 620, 1188
GlaI GCGC 4 cut(s) 37, 100, 165, 253
GluI GCNGC 7 cut(s) 6, 63, 73, 76, 162, 564, 864
GsuI CTGGAG 3 cut(s) 861, 902, 1076
HaeII RGCGCY 3 cut(s) 39, 102, 255
HaeIII GGCC 7 cut(s) 5, 185, 224, 975, 989, 1012, 1035
HhaI GCGC 4 cut(s) 38, 101, 166, 254
Hin1I GRCGYC 4 cut(s) 36, 45, 99, 201
Hin1II CATG 7 cut(s) 208, 652, 994, 1027, 1103, 1170, 1234
Hin6I GCGC 4 cut(s) 36, 99, 164, 252
HinP1I GCGC 4 cut(s) 36, 99, 164, 252
HinfI GANTC 3 cut(s) 535, 585, 1176
HphI GGTGA 4 cut(s) 4, 169, 1063, 1171
Hpy188I TCNGA 5 cut(s) 249, 440, 460, 543, 574
Hpy188III TCNNGA 7 cut(s) 151, 322, 497, 532, 881, 1076, 1111
Hpy99I CGWCG 6 cut(s) 47, 140, 143, 152, 290, 574
HpyAV CCTTC 3 cut(s) 130, 142, 178
HpyCH4III ACNGT 1 cut(s) 913
HpyCH4IV ACGT 5 cut(s) 45, 188, 201, 227, 240
HpyCH4V TGCA 7 cut(s) 406, 639, 737, 866, 983, 1118, 1173
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 84, 158, 389, 605, 872, 956
HpyF3I CTNAG 3 cut(s) 248, 393, 777
HpySE526I ACGT 5 cut(s) 45, 188, 201, 227, 240
Hsp92I GRCGYC 4 cut(s) 36, 45, 99, 201
Hsp92II CATG 7 cut(s) 208, 652, 994, 1027, 1103, 1170, 1234
HspAI GCGC 4 cut(s) 36, 99, 164, 252
KasI GGCGCC 2 cut(s) 35, 98
Kpn2I TCCGGA 1 cut(s) 1075
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 1161
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 6 cut(s) 153, 216, 435, 455, 940, 1161
LmnI GCTCC 4 cut(s) 366, 731, 872, 1095
Lsp1109I GCAGC 2 cut(s) 550, 850
MaeI CTAG 2 cut(s) 620, 1188
MaeII ACGT 5 cut(s) 45, 188, 201, 227, 240
MaeIII GTNAC 1 cut(s) 10
MalI GATC 6 cut(s) 155, 218, 437, 457, 942, 1163
MboI GATC 6 cut(s) 153, 216, 435, 455, 940, 1161
MboII GAAGA 7 cut(s) 40, 373, 530, 668, 686, 734, 1219
MflI RGATCY 1 cut(s) 940
MhlI GDGCHC 4 cut(s) 496, 768, 877, 1092
MlsI TGGCCA 1 cut(s) 989
MluCI AATT 6 cut(s) 422, 552, 653, 783, 845, 928
MluNI TGGCCA 1 cut(s) 989
Mly113I GGCGCC 2 cut(s) 36, 99
MmeI TCCRAC 2 cut(s) 552, 708
Mox20I TGGCCA 1 cut(s) 989
MroI TCCGGA 1 cut(s) 1075
MroNI GCCGGC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 989
MseI TTAA 1 cut(s) 1020
Msp20I TGGCCA 1 cut(s) 989
MspA1I CMGCKG 1 cut(s) 75
MspR9I CCNGG 5 cut(s) 182, 922, 1009, 1181, 1264
MvaI CCWGG 1 cut(s) 922
MvnI CGCG 3 cut(s) 75, 152, 164
MwoI GCNNNNNNNGC 7 cut(s) 59, 84, 158, 389, 605, 872, 956
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 2 cut(s) 36, 99
NciI CCSGG 4 cut(s) 182, 1009, 1181, 1264
NcoI CCATGG 1 cut(s) 990
NdeII GATC 6 cut(s) 153, 216, 435, 455, 940, 1161
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 7 cut(s) 208, 652, 994, 1027, 1103, 1170, 1234
NlaIV GGNNCC 7 cut(s) 37, 100, 118, 368, 485, 525, 1185
NmeAIII GCCGAG 4 cut(s) 6, 200, 280, 498
NmuCI GTSAC 1 cut(s) 10
NruI TCGCGA 1 cut(s) 152
NspI RCATGY 1 cut(s) 1027
PceI AGGCCT 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 144, 198
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 535, 585, 1176
PkrI GCNGC 7 cut(s) 7, 64, 74, 77, 163, 565, 865
PluTI GGCGCC 2 cut(s) 39, 102
Ppu21I YACGTR 1 cut(s) 241
Psp124BI GAGCTC 2 cut(s) 496, 1092
Psp6I CCWGG 1 cut(s) 920
PspGI CCWGG 1 cut(s) 920
PspN4I GGNNCC 7 cut(s) 37, 100, 118, 368, 485, 525, 1185
PspPI GGNCC 2 cut(s) 484, 1010
PsrI GAACNNNNNNTAC 2 cut(s) 507, 539
PsuI RGATCY 1 cut(s) 940
RruI TCGCGA 1 cut(s) 152
SacI GAGCTC 2 cut(s) 496, 1092
SacII CCGCGG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 1020
SatI GCNGC 7 cut(s) 6, 63, 73, 76, 162, 564, 864
Sau3AI GATC 6 cut(s) 153, 216, 435, 455, 940, 1161
Sau96I GGNCC 2 cut(s) 484, 1010
ScrFI CCNGG 5 cut(s) 182, 922, 1009, 1181, 1264
SduI GDGCHC 4 cut(s) 496, 768, 877, 1092
SfcI CTRYAG 1 cut(s) 666
SfoI GGCGCC 2 cut(s) 37, 100
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 1 cut(s) 484
Sse9I AATT 6 cut(s) 422, 552, 653, 783, 845, 928
SseBI AGGCCT 1 cut(s) 1035
SspDI GGCGCC 2 cut(s) 35, 98
SspI AATATT 1 cut(s) 604
SspMI CTAG 2 cut(s) 620, 1188
SstI GAGCTC 2 cut(s) 496, 1092
StuI AGGCCT 1 cut(s) 1035
StyD4I CCNGG 5 cut(s) 180, 920, 1007, 1179, 1262
StyI CCWWGG 4 cut(s) 966, 990, 1036, 1187
TaaI ACNGT 1 cut(s) 913
TaiI ACGT 5 cut(s) 48, 191, 204, 230, 243
TaqI TCGA 1 cut(s) 533
TasI AATT 6 cut(s) 422, 552, 653, 783, 845, 928
TauI GCSGC 5 cut(s) 8, 65, 75, 78, 164
TfiI GAWTC 3 cut(s) 535, 585, 1176
Tru1I TTAA 1 cut(s) 1020
Tru9I TTAA 1 cut(s) 1020
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 563, 863
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 637, 734, 1219
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 3 cut(s) 653, 783, 928
XceI RCATGY 1 cut(s) 1027
XmaJI CCTAGG 1 cut(s) 1187
XspI CTAG 2 cut(s) 620, 1188
ZraI GACGTC 2 cut(s) 46, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.