RchiOBHm_Chr3g0466791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007210
Physical Location & Seq
Forward (+)
13164590 .. 13168211
3622 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 861 bp
ATGGACGACAAAGACCTAGACGACGCGGCTTTGTGGGCCGTGATCGACTCCGCCGCCGCCTCCCACTCCTCCAAATCCAAATTCCAATCCCGCCAACCCCTCGCGATCCAATGCCAGCGGCCGTCTCCGCTGATCTCAAACCCTTCGCCGCCGCAGAAGCTCTTCCAGACCGCTCGGATCTCCTACTCCGGCGAATCCGACTCCAAATCGGAGGGCGAGGTCGTTGAGGAGCCTTGGGCTTTCCACCCGCCGAGGAAGATCGCCAGGTCAGCAAACGACGGCAATTCTCTCGCCGTAGTCAGAAATGTGCCGCGCACGCCTACCACGCCGGTGTACGCTTCGCCGGAGACGCATTTGTCGCCGGGAATCGGGAGGTTTAGTAGTCCTGTTAGCTATCCGCAGAGAGAAGAGAGGGATAATAATCCTGTGCAGATGGTGCAGCATAGCTTGTCTGGGATGTTTCCTTCGGTTTCTTTGTTTAAGGAGTATCAAGATGCAGCTATGGCGATCTTGGAGAAAACTGATTACACTAAGATTCATGGGAGTACTTACATCAAAAAGTCAGGTTGGAGGAAGATATCGTTTTACTTCAATCTCTCTTTTGAGATCAAGGACAAGAGCATTGAGTTTGATGAGAGTCGAAATGTTCTGCGTGCAGAGTTTGTGGTTCGGGCACACATGCAGGGTGGTAGGTTCTCGGATGGATGGGGCTCATGTGATCGGCGTGAGAAGAGATTCAACAAACCAAATCATGATATTCCAAGTACAGCAGAGACCAGGGCGAAAAATAAAGCATCCTCGGACTTGCTTGGAATTGGAGATTACAGACCTGGTGCAAGTCAAGACCTCCAATATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.0

Weight (kDa)

8.72

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
AccBSI CCGCTC 1 cut(s) 173
AccII CGCG 3 cut(s) 26, 104, 313
AclWI GGATC 2 cut(s) 100, 185
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 3 cut(s) 335, 547, 766
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 2 cut(s) 592, 739
AjnI CCWGG 3 cut(s) 263, 776, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AleI CACNNNNGTG 1 cut(s) 329
AluBI AGCT 4 cut(s) 160, 393, 447, 500
AluI AGCT 4 cut(s) 160, 393, 447, 500
Alw26I GTCTC 3 cut(s) 129, 341, 767
AlwI GGATC 2 cut(s) 100, 185
AoxI GGCC 2 cut(s) 36, 119
ApeKI GCWGC 2 cut(s) 439, 497
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 2 cut(s) 161, 734
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 713
BbvI GCAGC 2 cut(s) 451, 509
BccI CCATC 3 cut(s) 427, 695, 699
BceAI ACGGC 4 cut(s) 23, 106, 278, 295
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciT130I CCWGG 3 cut(s) 265, 778, 831
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 3 cut(s) 129, 341, 767
BfaI CTAG 1 cut(s) 17
BisI GCNGC 9 cut(s) 27, 54, 57, 119, 149, 152, 311, 440, 498
BlsI GCNGC 9 cut(s) 28, 55, 58, 120, 150, 153, 312, 441, 499
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 4 cut(s) 265, 363, 778, 831
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 4 cut(s) 265, 363, 778, 831
BmsI GCATC 2 cut(s) 484, 803
BpuMI CCSGG 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 4 cut(s) 233, 251, 777, 798
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse118I RCCGGY 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 3 cut(s) 265, 778, 831
BseDI CCNNGG 4 cut(s) 233, 251, 777, 798
BseGI GGATG 4 cut(s) 462, 706, 710, 794
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 368
BseRI GAGGAG 2 cut(s) 58, 242
BseSI GKGCMC 1 cut(s) 676
BseX3I CGGCCG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 451, 509
BsgI GTGCAG 3 cut(s) 449, 458, 675
Bsh1236I CGCG 3 cut(s) 26, 104, 313
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 38, 121
BsiEI CGRYCG 1 cut(s) 122
BsiSI CCGG 4 cut(s) 189, 329, 344, 362
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 3 cut(s) 129, 341, 767
BsmBI CGTCTC 2 cut(s) 129, 341
BsnI GGCC 2 cut(s) 38, 121
Bso31I GGTCTC 1 cut(s) 767
Bsp1286I GDGCHC 2 cut(s) 676, 713
Bsp143I GATC 8 cut(s) 42, 105, 132, 177, 258, 507, 606, 718
Bsp68I TCGCGA 1 cut(s) 104
BspANI GGCC 2 cut(s) 38, 121
BspFNI CGCG 3 cut(s) 26, 104, 313
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 100, 185
BspQI GCTCTTC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 767
BsrBI CCGCTC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 328
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 4 cut(s) 233, 251, 777, 798
BssMI GATC 8 cut(s) 42, 105, 132, 177, 258, 507, 606, 718
BssT1I CCWWGG 1 cut(s) 233
Bst2UI CCWGG 3 cut(s) 265, 778, 831
Bst6I CTCTTC 3 cut(s) 167, 402, 725
BstAPI GCANNNNNTGC 1 cut(s) 436
BstC8I GCNNGC 3 cut(s) 116, 317, 654
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 4 cut(s) 462, 706, 710, 794
BstFNI CGCG 3 cut(s) 26, 104, 313
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 8 cut(s) 45, 108, 135, 180, 261, 510, 609, 721
BstMAI GTCTC 3 cut(s) 129, 341, 767
BstMBI GATC 8 cut(s) 42, 105, 132, 177, 258, 507, 606, 718
BstMCI CGRYCG 1 cut(s) 122
BstNI CCWGG 3 cut(s) 265, 778, 831
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 4 cut(s) 263, 361, 776, 829
BstSLI GKGCMC 1 cut(s) 676
BstUI CGCG 3 cut(s) 26, 104, 313
BstV1I GCAGC 2 cut(s) 451, 509
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BstZI CGGCCG 1 cut(s) 119
BsuRI GGCC 2 cut(s) 38, 121
BtsCI GGATG 4 cut(s) 462, 706, 710, 794
BtuMI TCGCGA 1 cut(s) 104
Cac8I GCNNGC 3 cut(s) 116, 317, 654
CciI TCATGA 1 cut(s) 751
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 2 cut(s) 32, 358
CsiI ACCWGGT 1 cut(s) 829
Csp6I GTAC 3 cut(s) 334, 546, 765
CviAII CATG 5 cut(s) 539, 679, 714, 752, 858
CviQI GTAC 3 cut(s) 334, 546, 765
DdeI CTNAG 1 cut(s) 531
DpnI GATC 8 cut(s) 44, 107, 134, 179, 260, 509, 608, 720
DpnII GATC 8 cut(s) 42, 105, 132, 177, 258, 507, 606, 718
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 119
EagI CGGCCG 1 cut(s) 119
Eam1104I CTCTTC 3 cut(s) 167, 402, 725
EarI CTCTTC 3 cut(s) 167, 402, 725
EciI GGCGGA 1 cut(s) 40
EclXI CGGCCG 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 713
Eco31I GGTCTC 1 cut(s) 767
Eco32I GATATC 1 cut(s) 579
Eco52I CGGCCG 1 cut(s) 119
EcoRII CCWGG 3 cut(s) 263, 776, 829
EcoRV GATATC 1 cut(s) 579
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 713
ErhI CCWWGG 1 cut(s) 233
Esp3I CGTCTC 2 cut(s) 129, 341
FaeI CATG 5 cut(s) 542, 682, 717, 755, 861
FaiI YATR 8 cut(s) 444, 503, 540, 680, 715, 753, 855, 859
FatI CATG 5 cut(s) 538, 678, 713, 751, 857
FauI CCCGC 2 cut(s) 98, 255
Fnu4HI GCNGC 9 cut(s) 27, 54, 57, 119, 149, 152, 311, 440, 498
FokI GGATG 4 cut(s) 469, 713, 717, 781
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 9 cut(s) 27, 54, 57, 119, 149, 152, 311, 440, 498
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 314
GluI GCNGC 9 cut(s) 27, 54, 57, 119, 149, 152, 311, 440, 498
HaeIII GGCC 2 cut(s) 38, 121
HapII CCGG 4 cut(s) 189, 329, 344, 362
HgaI GACGC 2 cut(s) 32, 358
HhaI GCGC 1 cut(s) 315
Hin1II CATG 5 cut(s) 542, 682, 717, 755, 861
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 7 cut(s) 47, 194, 200, 366, 535, 637, 735
HpaII CCGG 4 cut(s) 189, 329, 344, 362
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 6 cut(s) 177, 199, 211, 302, 700, 802
Hpy188III TCNNGA 6 cut(s) 103, 166, 370, 491, 752, 842
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 2 cut(s) 26, 281
HpyAV CCTTC 2 cut(s) 153, 474
HpyCH4V TGCA 7 cut(s) 430, 439, 497, 656, 682, 836, 857
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 5 cut(s) 542, 682, 717, 755, 861
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 8 cut(s) 42, 105, 132, 177, 258, 507, 606, 718
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 2 cut(s) 451, 509
LweI GCATC 2 cut(s) 484, 803
MabI ACCWGGT 1 cut(s) 829
MaeI CTAG 1 cut(s) 17
MalI GATC 8 cut(s) 44, 107, 134, 179, 260, 509, 608, 720
MbiI CCGCTC 1 cut(s) 173
MboI GATC 8 cut(s) 42, 105, 132, 177, 258, 507, 606, 718
MboII GAAGA 5 cut(s) 154, 268, 419, 586, 742
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 676, 713
MluCI AATT 3 cut(s) 80, 283, 813
MlyI GAGTC 3 cut(s) 41, 194, 646
MmeI TCCRAC 2 cut(s) 222, 548
Mph1103I ATGCAT 1 cut(s) 859
MroXI GAANNNNTTC 2 cut(s) 161, 734
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 118, 130
MspI CCGG 4 cut(s) 189, 329, 344, 362
MspR9I CCNGG 4 cut(s) 265, 363, 778, 831
MvaI CCWGG 3 cut(s) 265, 778, 831
MvnI CGCG 3 cut(s) 26, 104, 313
NciI CCSGG 1 cut(s) 363
NdeII GATC 8 cut(s) 42, 105, 132, 177, 258, 507, 606, 718
NlaIII CATG 5 cut(s) 542, 682, 717, 755, 861
NlaIV GGNNCC 1 cut(s) 231
NmeAIII GCCGAG 1 cut(s) 276
NruI TCGCGA 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 859
NspI RCATGY 1 cut(s) 682
OliI CACNNNNGTG 1 cut(s) 329
PagI TCATGA 1 cut(s) 751
PciSI GCTCTTC 1 cut(s) 167
PdmI GAANNNNTTC 2 cut(s) 161, 734
PfeI GAWTC 4 cut(s) 194, 366, 535, 735
PkrI GCNGC 9 cut(s) 28, 55, 58, 120, 150, 153, 312, 441, 499
PleI GAGTC 3 cut(s) 41, 194, 645
PpsI GAGTC 3 cut(s) 41, 194, 645
Psp6I CCWGG 3 cut(s) 263, 776, 829
PspGI CCWGG 3 cut(s) 263, 776, 829
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 177
RruI TCGCGA 1 cut(s) 104
RsaI GTAC 3 cut(s) 335, 547, 766
RsaNI GTAC 3 cut(s) 334, 546, 765
RseI CAYNNNNRTG 1 cut(s) 329
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 9 cut(s) 27, 54, 57, 119, 149, 152, 311, 440, 498
Sau3AI GATC 8 cut(s) 42, 105, 132, 177, 258, 507, 606, 718
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 3 cut(s) 41, 194, 646
ScrFI CCNGG 4 cut(s) 265, 363, 778, 831
SduI GDGCHC 2 cut(s) 676, 713
SexAI ACCWGGT 1 cut(s) 829
SfaNI GCATC 2 cut(s) 484, 803
SgrAI CRCCGGYG 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 329
Sse9I AATT 3 cut(s) 80, 283, 813
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 263, 361, 776, 829
StyI CCWWGG 1 cut(s) 233
TaqI TCGA 2 cut(s) 45, 640
TasI AATT 3 cut(s) 80, 283, 813
TatI WGTACW 2 cut(s) 545, 764
TauI GCSGC 7 cut(s) 29, 56, 59, 121, 151, 154, 313
TfiI GAWTC 4 cut(s) 194, 366, 535, 735
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseI GCWGC 2 cut(s) 439, 497
TspDTI ATGAA 1 cut(s) 527
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 682
XmnI GAANNNNTTC 2 cut(s) 161, 734
XspI CTAG 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 547
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.