RchiOBHm_Chr3g0467001

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006939
Physical Location & Seq
Forward (+)
13265715 .. 13270661
4947 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1656 bp
ATGGTCCACAGCTCTACTGAAGATAGCCTAATTGTCGACTTTGGGAGGCAGGAGTTACAAGATATGGTGTTGAACAAGGATGAAGCACTTACGCGTCTTCGTTTTCGTTCGGCTCCTCTTCAGGGTGACGACTGCTCTCGCATTGAAGGAGAGCATGTTCTTTCCATCCATAAATCACCATATAAGAGCCACTTATATGATGCCAAGGTGGAAAAGGTGACCAGAGTGAGACACTCTACAAGGGTCTATTGCAGATGCAGTTTTATGATTAAGTGGCTTCACCCAGACTTCAAAGGACAGATGGTCACTGTCCCCTCTAGTTCAATCATGAAACTAGCAAGCAAAAGCATCAATTCTCATCCAACTGTTGCTGCATTATTGAAATCAGTTAAGCAAATGGGTTTATATACTGCACCTCCCCTTCCAATCATGCATGAAGACAATGATGTTGAATTCGACCTCAATAAATTATTGGGAAAGCAAATAGAAGAGATCAACATTTCAGCTAATGGAGTCACAAATGAAACTACAGTAGACATATTAGAGGTGGTTAAAGCTGTTGACAATGGACATGTTACTTTGTCCAAAGTAGGCACTTCAAAAGCTCAGGTTTCTCATGACCAGGATCAATTGAAATCTGTTAGTAACAGACCTGGTAACCTGGAAGTAAACATAGAAGATGAGGACCCACAAGCCCCTCTCTCATCCAAACAAGAAGAGCATTCAGAACACAGGTCTCATATTAGTCCTCTTGCTGCCCGTGCAGCTCTGGCCTCCCTAGTGTCGCTTACTCACAAGCATATTGCTATAAGTGGGACTGAACTTTTCAAGTCCAGTGACAGTAATAATATGTCTATTATGGTATCTTCTACTGCAATCAAATCTCCAAAAAATGGAAATGCGAACTCAGGTGTTAGAACAACTCGCTCAACAGTTCAGAAAGGTTTTGGAATTCAGAACAGTGATTTGCATGATTTTACTGAAGCCATCGAGTTAAGGGTCTTAACCAACACAGGAAGGTTGACACATTTAGCAGTCAAAGAAGAAAAAGATATATCATCTATGGAAATTAAACAAGGGTTGGAAGAAAGTGAGTCTGCTCAGAGTACAGGATCATATTCTTCTGAAGGAACTGACATTGTTCATGAAAGCAAAGTACTCAGAAAGAAGAATGATATATCAAACAAAGCAGTCTCTTCACCATTTCATTCAGAGAGTAACGGCCCTAAGGAAAATCTGACGTCTGGTGATCTTGAGGCGATTCAAGATGCATATGTTCAGATGAAGACTTGTGCTAAAGACACCAAGTCAAGTGTTTCAACCAACATGAGGAGGTTGACTCGTTCCATGGTCTCTTGTAAAGACAATTTGATAGTTCCTGAAAGCCATGCAGTGGAAAAGGAAAATCGTGAATCAAAAAAGAAGAAAGCTGTCTCTGCGACATCTCATAATGACAGTACACAAGGTGAAGAAAGTAATAGAAAGCACATGTCCGGTGCTGTCAGAAACAGTCGACAAACTGAAGGAAAAATGTCAGGCAGTGGTGACAATAGTCAAGGCCAGAAGAGGAAGTGTACTTCTTTGAGTAGGCAAGAGCAACGGTTTTCTCCACGATTAAGGGTTCTCCCTCGCACTCGTTCACAAAACAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

551

Amino Acids

60.87

Weight (kDa)

8.87

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 17 - 110 5.2e-16 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1244
AccB7I CCANNNNNTGG 2 cut(s) 893, 1393
AccI GTMKAC 3 cut(s) 36, 534, 1513
AccII CGCG 1 cut(s) 94
AclWI GGATC 2 cut(s) 633, 1120
AcsI RAATTY 2 cut(s) 452, 951
AcuI CTGAAG 5 cut(s) 39, 104, 1002, 1146, 1542
AcyI GRCGYC 1 cut(s) 1241
AdeI CACNNNGTG 1 cut(s) 1466
AfaI GTAC 4 cut(s) 1108, 1158, 1459, 1576
AfiI CCNNNNNNNGG 4 cut(s) 122, 893, 1329, 1393
AflIII ACRYGT 3 cut(s) 92, 571, 1488
AhdI GACNNNNNGTC 2 cut(s) 302, 1306
AjnI CCWGG 3 cut(s) 621, 652, 660
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 6 cut(s) 12, 506, 557, 605, 767, 1430
AluI AGCT 6 cut(s) 12, 506, 557, 605, 767, 1430
Alw26I GTCTC 5 cut(s) 223, 741, 1198, 1357, 1438
AlwI GGATC 2 cut(s) 633, 1120
AoxI GGCC 3 cut(s) 771, 1222, 1558
ApeKI GCWGC 3 cut(s) 371, 755, 764
ApoI RAATTY 2 cut(s) 452, 951
AspS9I GGNCC 3 cut(s) 4, 685, 1223
AsuHPI GGTGA 8 cut(s) 137, 168, 229, 272, 1191, 1259, 1478, 1556
AvaII GGWCC 2 cut(s) 4, 685
AxyI CCTNAGG 1 cut(s) 1227
BbsI GAAGAC 3 cut(s) 89, 444, 1292
BbvI GCAGC 3 cut(s) 358, 742, 776
BccI CCATC 3 cut(s) 173, 295, 995
BceAI ACGGC 1 cut(s) 1237
BciT130I CCWGG 3 cut(s) 623, 654, 662
BcoDI GTCTC 5 cut(s) 223, 741, 1198, 1357, 1438
BfaI CTAG 3 cut(s) 318, 335, 779
BfmI CTRYAG 1 cut(s) 528
BisI GCNGC 3 cut(s) 372, 756, 765
BlsI GCNGC 3 cut(s) 373, 757, 766
BmcAI AGTACT 1 cut(s) 1158
Bme1390I CCNGG 3 cut(s) 623, 654, 662
Bme18I GGWCC 2 cut(s) 4, 685
BmeRI GACNNNNNGTC 2 cut(s) 302, 1306
BmgT120I GGNCC 3 cut(s) 4, 685, 1223
BmiI GGNNCC 2 cut(s) 114, 687
BmrFI CCNGG 3 cut(s) 623, 654, 662
BmsI GCATC 4 cut(s) 190, 245, 357, 1258
BoxI GACNNNNGTC 1 cut(s) 1551
BpiI GAAGAC 3 cut(s) 89, 444, 1292
BplI GAGNNNNNCTC 2 cut(s) 1324, 1356
Bpu10I CCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 1274
BsaHI GRCGYC 1 cut(s) 1241
BsaI GGTCTC 2 cut(s) 741, 1357
BsaJI CCNNGG 2 cut(s) 204, 1347
BsaWI WCCGGW 1 cut(s) 1493
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 400, 430
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 893, 1329, 1393
Bse1I ACTGG 1 cut(s) 834
Bse21I CCTNAGG 1 cut(s) 1227
BseBI CCWGG 3 cut(s) 623, 654, 662
BseDI CCNNGG 2 cut(s) 204, 1347
BseGI GGATG 4 cut(s) 85, 165, 358, 704
BseLI CCNNNNNNNGG 4 cut(s) 122, 893, 1329, 1393
BseMII CTCAG 4 cut(s) 620, 921, 1115, 1174
BseNI ACTGG 1 cut(s) 834
BseRI GAGGAG 2 cut(s) 105, 1345
BseXI GCAGC 3 cut(s) 358, 742, 776
BsgI GTGCAG 2 cut(s) 396, 783
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 773, 1224, 1560
BsiSI CCGG 1 cut(s) 1494
BslFI GGGAC 2 cut(s) 296, 829
BslI CCNNNNNNNGG 4 cut(s) 122, 893, 1329, 1393
BsmAI GTCTC 5 cut(s) 223, 741, 1198, 1357, 1438
BsmFI GGGAC 2 cut(s) 296, 829
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 3 cut(s) 773, 1224, 1560
Bso31I GGTCTC 2 cut(s) 741, 1357
Bsp143I GATC 4 cut(s) 492, 625, 1112, 1249
Bsp19I CCATGG 1 cut(s) 1347
BspANI GGCC 3 cut(s) 773, 1224, 1560
BspCNI CTCAG 4 cut(s) 619, 920, 1114, 1173
BspFNI CGCG 1 cut(s) 94
BspHI TCATGA 3 cut(s) 327, 616, 1144
BspLI GGNNCC 2 cut(s) 114, 687
BspPI GGATC 2 cut(s) 633, 1120
BspQI GCTCTTC 1 cut(s) 711
BspTNI GGTCTC 2 cut(s) 741, 1357
BsrI ACTGG 1 cut(s) 834
BssECI CCNNGG 2 cut(s) 204, 1347
BssMI GATC 4 cut(s) 492, 625, 1112, 1249
BssNI GRCGYC 1 cut(s) 1241
BssT1I CCWWGG 2 cut(s) 204, 1347
Bst2UI CCWGG 3 cut(s) 623, 654, 662
Bst4CI ACNGT 9 cut(s) 310, 367, 532, 842, 934, 962, 1457, 1511, 1602
Bst6I CTCTTC 5 cut(s) 123, 483, 711, 1201, 1559
BstACI GRCGYC 1 cut(s) 1241
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 5 cut(s) 606, 907, 1101, 1160, 1227
BstDSI CCRYGG 1 cut(s) 1347
BstEII GGTNACC 2 cut(s) 217, 656
BstF5I GGATG 4 cut(s) 85, 165, 358, 704
BstFNI CGCG 1 cut(s) 94
BstKTI GATC 4 cut(s) 495, 628, 1115, 1252
BstMAI GTCTC 5 cut(s) 223, 741, 1198, 1357, 1438
BstMBI GATC 4 cut(s) 492, 625, 1112, 1249
BstMWI GCNNNNNNNGC 4 cut(s) 761, 764, 770, 1436
BstNI CCWGG 3 cut(s) 623, 654, 662
BstNSI RCATGY 3 cut(s) 158, 575, 1492
BstPAI GACNNNNGTC 1 cut(s) 1551
BstPI GGTNACC 2 cut(s) 217, 656
BstSCI CCNGG 3 cut(s) 621, 652, 660
BstSFI CTRYAG 1 cut(s) 528
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 358, 742, 776
BstV2I GAAGAC 3 cut(s) 89, 444, 1292
Bsu36I CCTNAGG 1 cut(s) 1227
BsuRI GGCC 3 cut(s) 773, 1224, 1560
BtgI CCRYGG 1 cut(s) 1347
BtsCI GGATG 4 cut(s) 85, 165, 358, 704
BtsI GCAGTG 2 cut(s) 1398, 1546
BtsIMutI CAGTG 5 cut(s) 306, 841, 967, 1398, 1546
Cac8I GCNNGC 1 cut(s) 340
CciI TCATGA 3 cut(s) 327, 616, 1144
Cfr13I GGNCC 3 cut(s) 4, 685, 1223
CseI GACGC 1 cut(s) 83
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 4 cut(s) 1107, 1157, 1458, 1575
CviQI GTAC 4 cut(s) 1107, 1157, 1458, 1575
DdeI CTNAG 5 cut(s) 606, 907, 1101, 1160, 1227
DpnI GATC 4 cut(s) 494, 627, 1114, 1251
DpnII GATC 4 cut(s) 492, 625, 1112, 1249
DraIII CACNNNGTG 1 cut(s) 1466
DriI GACNNNNNGTC 2 cut(s) 302, 1306
Eam1104I CTCTTC 5 cut(s) 123, 483, 711, 1201, 1559
Eam1105I GACNNNNNGTC 2 cut(s) 302, 1306
EarI CTCTTC 5 cut(s) 123, 483, 711, 1201, 1559
Eco130I CCWWGG 2 cut(s) 204, 1347
Eco31I GGTCTC 2 cut(s) 741, 1357
Eco47I GGWCC 2 cut(s) 4, 685
Eco57I CTGAAG 5 cut(s) 39, 104, 1002, 1146, 1542
Eco81I CCTNAGG 1 cut(s) 1227
Eco91I GGTNACC 2 cut(s) 217, 656
EcoO109I RGGNCCY 1 cut(s) 685
EcoO65I GGTNACC 2 cut(s) 217, 656
EcoRI GAATTC 2 cut(s) 452, 951
EcoRII CCWGG 3 cut(s) 621, 652, 660
EcoT14I CCWWGG 2 cut(s) 204, 1347
EcoT22I ATGCAT 2 cut(s) 435, 1273
ErhI CCWWGG 2 cut(s) 204, 1347
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 2 cut(s) 296, 829
FauNDI CATATG 1 cut(s) 1273
FblI GTMKAC 3 cut(s) 36, 534, 1513
Fnu4HI GCNGC 3 cut(s) 372, 756, 765
FokI GGATG 4 cut(s) 92, 152, 345, 691
Fsp4HI GCNGC 3 cut(s) 372, 756, 765
FspBI CTAG 3 cut(s) 318, 335, 779
GluI GCNGC 3 cut(s) 372, 756, 765
HaeIII GGCC 3 cut(s) 773, 1224, 1560
HapII CCGG 1 cut(s) 1494
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 1241
HincII GTYRAC 5 cut(s) 37, 562, 1023, 1338, 1514
HindII GTYRAC 5 cut(s) 37, 562, 1023, 1338, 1514
HinfI GANTC 5 cut(s) 513, 1094, 1261, 1339, 1412
HpaII CCGG 1 cut(s) 1494
HphI GGTGA 8 cut(s) 137, 168, 229, 272, 1191, 1259, 1478, 1556
Hpy188III TCNNGA 7 cut(s) 328, 617, 1145, 1253, 1265, 1379, 1409
HpyAV CCTTC 5 cut(s) 140, 431, 1011, 1121, 1517
HpyCH4III ACNGT 9 cut(s) 310, 367, 532, 842, 934, 962, 1457, 1511, 1602
HpyCH4IV ACGT 1 cut(s) 1241
HpyF10VI GCNNNNNNNGC 4 cut(s) 761, 764, 770, 1436
HpyF3I CTNAG 5 cut(s) 606, 907, 1101, 1160, 1227
HpySE526I ACGT 1 cut(s) 1241
Hsp92I GRCGYC 1 cut(s) 1241
Kzo9I GATC 4 cut(s) 492, 625, 1112, 1249
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 3 cut(s) 358, 742, 776
LweI GCATC 4 cut(s) 190, 245, 357, 1258
MabI ACCWGGT 1 cut(s) 652
MaeI CTAG 3 cut(s) 318, 335, 779
MaeII ACGT 1 cut(s) 1241
MalI GATC 4 cut(s) 494, 627, 1114, 1251
MboI GATC 4 cut(s) 492, 625, 1112, 1249
MfeI CAATTG 1 cut(s) 629
MluCI AATT 8 cut(s) 30, 352, 452, 467, 629, 951, 1068, 1366
MluI ACGCGT 1 cut(s) 92
MlyI GAGTC 3 cut(s) 522, 1103, 1333
MmeI TCCRAC 2 cut(s) 386, 1062
Mph1103I ATGCAT 2 cut(s) 435, 1273
MseI TTAA 8 cut(s) 270, 390, 552, 995, 1004, 1071, 1616, 1654
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 1 cut(s) 1494
MspR9I CCNGG 3 cut(s) 623, 654, 662
MunI CAATTG 1 cut(s) 629
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 3 cut(s) 623, 654, 662
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 4 cut(s) 761, 764, 770, 1436
NcoI CCATGG 1 cut(s) 1347
NdeI CATATG 1 cut(s) 1273
NdeII GATC 4 cut(s) 492, 625, 1112, 1249
NlaIV GGNNCC 2 cut(s) 114, 687
NmuCI GTSAC 6 cut(s) 125, 217, 304, 514, 836, 1544
NsiI ATGCAT 2 cut(s) 435, 1273
NspI RCATGY 3 cut(s) 158, 575, 1492
PagI TCATGA 3 cut(s) 327, 616, 1144
PciI ACATGT 2 cut(s) 571, 1488
PciSI GCTCTTC 1 cut(s) 711
PctI GAATGC 1 cut(s) 721
PfeI GAWTC 2 cut(s) 1261, 1412
PflMI CCANNNNNTGG 2 cut(s) 893, 1393
PkrI GCNGC 3 cut(s) 373, 757, 766
PleI GAGTC 3 cut(s) 521, 1102, 1333
PpsI GAGTC 3 cut(s) 521, 1102, 1333
PpuMI RGGWCCY 1 cut(s) 685
PscI ACATGT 2 cut(s) 571, 1488
PshAI GACNNNNGTC 1 cut(s) 1551
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 3 cut(s) 621, 652, 660
PspEI GGTNACC 2 cut(s) 217, 656
PspGI CCWGG 3 cut(s) 621, 652, 660
PspN4I GGNNCC 2 cut(s) 114, 687
PspPI GGNCC 3 cut(s) 4, 685, 1223
PspPPI RGGWCCY 1 cut(s) 685
RsaI GTAC 4 cut(s) 1108, 1158, 1459, 1576
RsaNI GTAC 4 cut(s) 1107, 1157, 1458, 1575
RseI CAYNNNNRTG 1 cut(s) 195
SalI GTCGAC 2 cut(s) 35, 1512
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 8 cut(s) 270, 390, 552, 995, 1004, 1071, 1616, 1654
SatI GCNGC 3 cut(s) 372, 756, 765
Sau3AI GATC 4 cut(s) 492, 625, 1112, 1249
Sau96I GGNCC 3 cut(s) 4, 685, 1223
ScaI AGTACT 1 cut(s) 1158
SchI GAGTC 3 cut(s) 522, 1103, 1333
ScrFI CCNGG 3 cut(s) 623, 654, 662
SexAI ACCWGGT 1 cut(s) 652
SfaNI GCATC 4 cut(s) 190, 245, 357, 1258
SfcI CTRYAG 1 cut(s) 528
SinI GGWCC 2 cut(s) 4, 685
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 1253
SmoI CTYRAG 1 cut(s) 1253
Sse9I AATT 8 cut(s) 30, 352, 452, 467, 629, 951, 1068, 1366
SspMI CTAG 3 cut(s) 318, 335, 779
StyD4I CCNGG 3 cut(s) 621, 652, 660
StyI CCWWGG 2 cut(s) 204, 1347
TaaI ACNGT 9 cut(s) 310, 367, 532, 842, 934, 962, 1457, 1511, 1602
TaiI ACGT 1 cut(s) 1244
TaqI TCGA 4 cut(s) 36, 456, 990, 1513
TasI AATT 8 cut(s) 30, 352, 452, 467, 629, 951, 1068, 1366
TatI WGTACW 4 cut(s) 1106, 1156, 1457, 1574
TfiI GAWTC 2 cut(s) 1261, 1412
Tru1I TTAA 8 cut(s) 270, 390, 552, 995, 1004, 1071, 1616, 1654
Tru9I TTAA 8 cut(s) 270, 390, 552, 995, 1004, 1071, 1616, 1654
TscAI CASTG 5 cut(s) 313, 841, 967, 1398, 1546
TseFI GTSAC 6 cut(s) 125, 217, 304, 514, 836, 1544
TseI GCWGC 3 cut(s) 371, 755, 764
Tsp45I GTSAC 6 cut(s) 125, 217, 304, 514, 836, 1544
TspDTI ATGAA 8 cut(s) 96, 344, 450, 537, 1133, 1161, 1196, 1298
TspRI CASTG 5 cut(s) 313, 841, 967, 1398, 1546
Van91I CCANNNNNTGG 2 cut(s) 893, 1393
VpaK11BI GGWCC 2 cut(s) 4, 685
XapI RAATTY 2 cut(s) 452, 951
XceI RCATGY 3 cut(s) 158, 575, 1492
XmiI GTMKAC 3 cut(s) 36, 534, 1513
XspI CTAG 3 cut(s) 318, 335, 779
ZraI GACGTC 1 cut(s) 1242
ZrmI AGTACT 1 cut(s) 1158
Zsp2I ATGCAT 2 cut(s) 435, 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.