RchiOBHm_Chr3g0468941

Pentatricopeptide repeat-containing protein At3g53360

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014545
Physical Location & Seq
Forward (+)
14776387 .. 14778695
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2271 bp
ATGAAAATATTCAAAGCCTCAAAACCATTGACCTTCAACTACAGTCAGCCACCTTCAACCCTTTTACCCCACTTCAAAAACGAACTCTTTGGCAATGACTACATAACCTCCTTGTGTAGACAGAAGCTTTACAGAGAAGCCCTTCAAGCATTTGACTTTCTAGACAAGAACACCAATTTCAAAGTGTTTCCCAGCACTTATGCTAATTTGGTTTCCGCTTGCTCATTTTTAAGGTCTATAGAACATGGTAGGAGAATCCATCATCATATTTTGGGGTCCAATTGTGAGCAAGACGTTGTTCTTCAGAATCACATTCTTAACATGTATGGGAAATGTGGGTCGTTTTGGGATGCAGGGAAGGTATTTGATGAAATGCCTGAGAGAAATGTGGTGTCTTGGACTTCACTGATTGCTGGATATTCACAGAATAGGCAAGAGGTTAAAGCAGTTGAGTTGTATTTCCAAATGCTTCGATCGGGTTGTAAGCCTGATCAGTTTACTTTCGGAAGCATAGTGAAAGCGTGCTCGGGTTTGGGGAATGTGTGGTTGGGGAGACAACTCCATGCCCATGTTGTGAAATCAGAAACTGGTTCACACCCTATTGCACAAAATGCGCTTACTTCAATGTACACAAAGTTTGGTCTGATTGCAGATGCATTTGATGTGTTCACGCGTGTTGCGATGAAGGATTTGATTTCTTGGGGTTCAATCATTGCAGGGTTTTCGCAACTTGGTTATGAGAAAGAAGCTTTGGCTCATTTTAAGGAAATGCTGTGTCAGGGTGCTCACACGCCGAATGAGTTTATATTTGGAAGTGCTTTTAGTGCGTGTAGCGGTCTTGTTCAACCGGAATATGGAAGGCAGATACATGGGATGTGCATAAAGTTTGGTTTAGGGAGAGACAATTTTGCTGGATGCTCCCTTTGTGACATGTATGCAAAGTGTGGACATTTAGAGTCTGCAAGAACTGTATTTTGTCACATAGACCGACCTGATTTGGTGTCCTGGAATGCAATGATCTCGGGGTGTTCTAGTGTTGGAGATGCCAATGAAGCGGTATCGTTCTTTTCTAGGATGCAGCATATGAGACTAATCCCCGATGAAGTTAGTGTTCTCTCTGTACTTTCTGCTTGCACGAGCTCTCCAACACTTTCTCAGGGTAGACAGGTTCACTCCTACATTATCAAGGCAGCTTTTGATTTCACTGTCGCTGTGTGTAATGCTTTGCTAACAATGTATGCAAAGTGTTCAAATCTCGATGATGCATTTGTTGTGTTTGAAAATATGAGAAATCATACTGATTCTGTTTCTTGGAATGCCATTATTACAGCGTGCATGCAGCACAACCAAGCTGGAGAAGTTTTCAGATTATTGAAGCTAATGCTTAGTTCTGAAATTAGGCCTGATTATATTACTTTAAGTAATGTAATTGGAGCATGTGCAGATATAGCATCTCTGGAAGTTGGGAATCAAATTCATTGCTTTACTGTGAAAAGTGGGTTTGTACTTGGTGTTACTGTCAGCAATGGATTGGTTGACATGTATACAAAGTGTGGATCGCTTGAAAGTGCCAGAAAGCTCTTTAGTTTGATGGAGAATCCAGATGTTGTGTCATGGAGTAGTTTGATTATGGGTTATGCTCAGTTCGGATGTGGAGAGGAAGCTCTTGAGCTGTTTAAAACAATGAAAGCATTGGGTGTAAAACCAAATGAAGTTACAATGGTGGGGGTCCTTACAGCTTGCAGTCATATTGGACTGGTTGAAGAAGGGCGGCAATTGTATAAAACCATGGAATCTGAACATGGTATTGTGCCGACAAGAGAGCATTGTTCTTGTATGGTTGACTTACTTGCTCGTGCCGGATGCTTACATGAAGCGGAGGAGTTCATCAAGAAAATGACATTTGAACCCGACATTGTGGTGTGGAAGACTCTACTAGCTGCCTGCAAAACCTGTGGGAACACTGAAATAGGAAAACAGGCAGCAGAGAATGTACTAAAACTAGATCCTTCCAATTCTGCTGCACTTGTGTTACTTTGCAACATCAATGCTTCTTCTGGCAGATGGGATGAAGTTGCCAGGTTGAGGAATATGATGCGAGAAAGTGGCGTAAAGAAAGTTCCAGGTCAGAGCTGGATTGAAGTCAAGGATAGGATCCATGTATTTTTAGTTGAAGATAGTTCGCACCCTGAGAGGGGTCGAATATATGCAATGCTAGAGGAGTTGTGGTTGCAGATGTTGGATGATGGTTGTGATCCACTTCAGCCATAA

Protein Analysis

756

Amino Acids

83.98

Weight (kDa)

6.28

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 128 - 175 1.7e-11 PPR repeat family
PPR PF01535 131 - 161 1.5e-06 PPR repeat
PPR_2 PF13041 331 - 378 2e-08 PPR repeat family
PPR PF01535 334 - 362 1.3e-06 PPR repeat
PPR_2 PF13041 434 - 481 3.4e-08 PPR repeat family
PPR_2 PF13041 534 - 582 4.6e-11 PPR repeat family
PPR PF01535 537 - 567 4.8e-08 PPR repeat
E_motif PF20431 654 - 714 1.5e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53360 AT3G53360
fragaria_vesca FvH4_6g15460
malus_domestica MD04G1103100.v1.1 MD12G1123300.v1.1
prunus_persica Prupe.6G239900_v2.0.a1
pyrus_communis pycom04g09820 pycom12g12200
rosa_chinensis RchiOBHm_Chr3g0468941
rosa_laevigata RLG00000024398
rosa_multiflora Rmu_co8434945.1_g000001
rosa_roxburghii Rroxscaffold_6G00412440
rosa_rugosa Rorug03G0097700
rosa_samantha Rh3AG147500 Rh3BG170100 Rh3DG205100
rosa_wichuraiana Rw3G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 118, 1162, 1544
AccII CGCG 1 cut(s) 673
AciI CCGC 5 cut(s) 216, 834, 1055, 1771, 1877
AclWI GGATC 5 cut(s) 1564, 2000, 2149, 2162, 2249
AcsI RAATTY 1 cut(s) 1473
AcuI CTGAAG 2 cut(s) 287, 2246
AfaI GTAC 4 cut(s) 629, 1122, 1506, 1995
AfiI CCNNNNNNNGG 4 cut(s) 854, 2085, 2194, 2195
AflIII ACRYGT 4 cut(s) 321, 671, 930, 1539
AjnI CCWGG 3 cut(s) 1004, 2078, 2122
AjuI GAANNNNNNNTTGG 4 cut(s) 530, 562, 734, 766
Alw21I GWGCWC 3 cut(s) 527, 787, 1142
Alw26I GTCTC 3 cut(s) 547, 894, 1081
AlwI GGATC 5 cut(s) 1564, 2000, 2149, 2162, 2249
AlwNI CAGNNNCTG 1 cut(s) 587
Ama87I CYCGRG 2 cut(s) 526, 1021
AoxI GGCC 1 cut(s) 1400
ApeKI GCWGC 6 cut(s) 1078, 1190, 1339, 1940, 1982, 2021
ApoI RAATTY 1 cut(s) 1473
Asp700I GAANNNNTTC 2 cut(s) 8, 141
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 2 cut(s) 276, 1729
AvaI CYCGRG 2 cut(s) 526, 1021
AvaII GGWCC 2 cut(s) 276, 1729
BamHI GGATCC 1 cut(s) 2154
BanII GRGCYC 1 cut(s) 1142
BauI CACGAG 2 cut(s) 1135, 1854
BbsI GAAGAC 1 cut(s) 1934
Bbv12I GWGCWC 3 cut(s) 527, 787, 1142
BbvI GCAGC 6 cut(s) 1090, 1202, 1351, 1927, 1994, 2008
BccI CCATC 4 cut(s) 267, 1585, 2058, 2240
BcgI CGANNNNNNTGC 4 cut(s) 705, 739, 1002, 1036
BciT130I CCWGG 3 cut(s) 1006, 2080, 2124
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 3 cut(s) 547, 894, 1081
BfaI CTAG 6 cut(s) 161, 1032, 1071, 1937, 2003, 2216
BfmI CTRYAG 2 cut(s) 40, 237
BisI GCNGC 7 cut(s) 1079, 1191, 1340, 1772, 1941, 1983, 2022
BlsI GCNGC 7 cut(s) 1080, 1192, 1341, 1773, 1942, 1984, 2023
Bme1390I CCNGG 3 cut(s) 1006, 2080, 2124
Bme18I GGWCC 2 cut(s) 276, 1729
BmeT110I CYCGRG 2 cut(s) 526, 1021
BmgT120I GGNCC 2 cut(s) 276, 1729
BmiI GGNNCC 3 cut(s) 277, 1730, 2156
BmrFI CCNGG 3 cut(s) 1006, 2080, 2124
BmsI GCATC 9 cut(s) 340, 643, 905, 1033, 1065, 1252, 1460, 1853, 2085
BpiI GAAGAC 1 cut(s) 1934
BpmI CTGGAG 1 cut(s) 1374
BpuEI CTTGAG 1 cut(s) 1688
BsaJI CCNNGG 1 cut(s) 1788
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 6 cut(s) 92, 122, 1126, 1156, 2213, 2243
Bsc4I CCNNNNNNNGG 4 cut(s) 854, 2085, 2194, 2195
Bse1I ACTGG 2 cut(s) 592, 1761
Bse3DI GCAATG 6 cut(s) 100, 711, 1020, 1477, 1531, 2217
BseBI CCWGG 3 cut(s) 1006, 2080, 2124
BseDI CCNNGG 1 cut(s) 1788
BseGI GGATG 8 cut(s) 355, 879, 920, 1080, 1655, 1868, 2074, 2248
BseLI CCNNNNNNNGG 4 cut(s) 854, 2085, 2194, 2195
BseMI GCAATG 6 cut(s) 100, 711, 1020, 1477, 1531, 2217
BseMII CTCAG 4 cut(s) 369, 1169, 1655, 2181
BseNI ACTGG 2 cut(s) 592, 1761
BseRI GAGGAG 2 cut(s) 1895, 2234
BseXI GCAGC 6 cut(s) 1090, 1202, 1351, 1927, 1994, 2008
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 2 cut(s) 1461, 2007
Bsh1236I CGCG 1 cut(s) 673
Bsh1285I CGRYCG 1 cut(s) 476
BshFI GGCC 1 cut(s) 1402
BsiEI CGRYCG 1 cut(s) 476
BsiHKAI GWGCWC 3 cut(s) 527, 787, 1142
BsiHKCI CYCGRG 2 cut(s) 526, 1021
BsiSI CCGG 2 cut(s) 848, 1860
BslI CCNNNNNNNGG 4 cut(s) 854, 2085, 2194, 2195
BsmAI GTCTC 3 cut(s) 547, 894, 1081
BsmI GAATGC 2 cut(s) 1015, 1321
BsnI GGCC 1 cut(s) 1402
BsoBI CYCGRG 2 cut(s) 526, 1021
Bsp1286I GDGCHC 3 cut(s) 527, 787, 1142
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 7 cut(s) 473, 490, 1017, 1556, 2005, 2154, 2254
Bsp19I CCATGG 1 cut(s) 1788
BspACI CCGC 5 cut(s) 216, 834, 1055, 1771, 1877
BspANI GGCC 1 cut(s) 1402
BspCNI CTCAG 4 cut(s) 370, 1168, 1654, 2182
BspFNI CGCG 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 277, 1730, 2156
BspPI GGATC 5 cut(s) 1564, 2000, 2149, 2162, 2249
BsrDI GCAATG 6 cut(s) 100, 711, 1020, 1477, 1531, 2217
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 2 cut(s) 592, 1761
BssECI CCNNGG 1 cut(s) 1788
BssMI GATC 7 cut(s) 473, 490, 1017, 1556, 2005, 2154, 2254
BssNAI GTATAC 1 cut(s) 1545
BssSI CACGAG 2 cut(s) 1135, 1854
BssT1I CCWWGG 1 cut(s) 1788
Bst1107I GTATAC 1 cut(s) 1545
Bst2BI CACGAG 2 cut(s) 1135, 1854
Bst2UI CCWGG 3 cut(s) 1006, 2080, 2124
Bst4CI ACNGT 5 cut(s) 44, 970, 1207, 1489, 1519
BstAPI GCANNNNNTGC 1 cut(s) 611
BstAUI TGTACA 1 cut(s) 627
BstC8I GCNNGC 7 cut(s) 220, 523, 1132, 1333, 1337, 1741, 1945
BstDEI CTNAG 5 cut(s) 378, 1155, 1385, 1641, 2190
BstDSI CCRYGG 1 cut(s) 1788
BstF5I GGATG 8 cut(s) 355, 879, 920, 1080, 1655, 1868, 2074, 2248
BstFNI CGCG 1 cut(s) 673
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 7 cut(s) 476, 493, 1020, 1559, 2008, 2157, 2257
BstMAI GTCTC 3 cut(s) 547, 894, 1081
BstMBI GATC 7 cut(s) 473, 490, 1017, 1556, 2005, 2154, 2254
BstMCI CGRYCG 1 cut(s) 476
BstMWI GCNNNNNNNGC 5 cut(s) 146, 611, 824, 1052, 1448
BstNI CCWGG 3 cut(s) 1006, 2080, 2124
BstNSI RCATGY 5 cut(s) 325, 934, 1339, 1440, 1543
BstSCI CCNGG 3 cut(s) 1004, 2078, 2122
BstSFI CTRYAG 2 cut(s) 40, 237
BstUI CGCG 1 cut(s) 673
BstV1I GCAGC 6 cut(s) 1090, 1202, 1351, 1927, 1994, 2008
BstV2I GAAGAC 1 cut(s) 1934
BstX2I RGATCY 2 cut(s) 2005, 2154
BstYI RGATCY 2 cut(s) 2005, 2154
BstZ17I GTATAC 1 cut(s) 1545
BsuRI GGCC 1 cut(s) 1402
BtgI CCRYGG 1 cut(s) 1788
BtgZI GCGATG 1 cut(s) 695
BtsCI GGATG 8 cut(s) 355, 879, 920, 1080, 1655, 1868, 2074, 2248
BtsIMutI CAGTG 3 cut(s) 404, 1203, 1962
Cac8I GCNNGC 7 cut(s) 220, 523, 1132, 1333, 1337, 1741, 1945
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 1 cut(s) 616
Cfr13I GGNCC 2 cut(s) 276, 1729
Csp6I GTAC 4 cut(s) 628, 1121, 1505, 1994
CspCI CAANNNNNGTGG 2 cut(s) 1936, 1971
CviQI GTAC 4 cut(s) 628, 1121, 1505, 1994
DdeI CTNAG 5 cut(s) 378, 1155, 1385, 1641, 2190
DpnI GATC 7 cut(s) 475, 492, 1019, 1558, 2007, 2156, 2256
DpnII GATC 7 cut(s) 473, 490, 1017, 1556, 2005, 2154, 2254
DraI TTTAAA 1 cut(s) 1678
Ecl136II GAGCTC 1 cut(s) 1140
Eco130I CCWWGG 1 cut(s) 1788
Eco147I AGGCCT 1 cut(s) 1402
Eco24I GRGCYC 1 cut(s) 1142
Eco47I GGWCC 2 cut(s) 276, 1729
Eco53kI GAGCTC 1 cut(s) 1140
Eco57I CTGAAG 2 cut(s) 287, 2246
Eco88I CYCGRG 2 cut(s) 526, 1021
EcoICRI GAGCTC 1 cut(s) 1140
EcoO109I RGGNCCY 1 cut(s) 1729
EcoRII CCWGG 3 cut(s) 1004, 2078, 2122
EcoT14I CCWWGG 1 cut(s) 1788
EcoT22I ATGCAT 2 cut(s) 658, 1267
EcoT38I GRGCYC 1 cut(s) 1142
ErhI CCWWGG 1 cut(s) 1788
FauNDI CATATG 1 cut(s) 1083
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 3 cut(s) 118, 1162, 1544
Fnu4HI GCNGC 7 cut(s) 1079, 1191, 1340, 1772, 1941, 1983, 2022
FokI GGATG 8 cut(s) 362, 886, 927, 1087, 1662, 1875, 2081, 2255
FriOI GRGCYC 1 cut(s) 1142
Fsp4HI GCNGC 7 cut(s) 1079, 1191, 1340, 1772, 1941, 1983, 2022
FspBI CTAG 6 cut(s) 161, 1032, 1071, 1937, 2003, 2216
GlaI GCGC 1 cut(s) 615
GluI GCNGC 7 cut(s) 1079, 1191, 1340, 1772, 1941, 1983, 2022
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 1374
HaeIII GGCC 1 cut(s) 1402
HapII CCGG 2 cut(s) 848, 1860
HhaI GCGC 1 cut(s) 616
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HincII GTYRAC 2 cut(s) 1537, 1843
HindII GTYRAC 2 cut(s) 1537, 1843
HindIII AAGCTT 2 cut(s) 125, 747
HinfI GANTC 8 cut(s) 255, 307, 956, 1301, 1468, 1597, 1793, 1930
HpaII CCGG 2 cut(s) 848, 1860
Hpy188I TCNGA 9 cut(s) 306, 506, 583, 645, 1367, 1393, 1649, 1798, 2130
Hpy188III TCNNGA 6 cut(s) 161, 1256, 1457, 1601, 1667, 1891
HpyAV CCTTC 8 cut(s) 43, 63, 152, 352, 679, 852, 1760, 2019
HpyCH4III ACNGT 5 cut(s) 44, 970, 1207, 1489, 1519
HpyCH4IV ACGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 611, 824, 1052, 1448
HpyF3I CTNAG 5 cut(s) 378, 1155, 1385, 1641, 2190
HpySE526I ACGT 1 cut(s) 294
HspAI GCGC 1 cut(s) 614
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 7 cut(s) 473, 490, 1017, 1556, 2005, 2154, 2254
LmnI GCTCC 2 cut(s) 923, 1433
Lsp1109I GCAGC 6 cut(s) 1090, 1202, 1351, 1927, 1994, 2008
LweI GCATC 9 cut(s) 340, 643, 905, 1033, 1065, 1252, 1460, 1853, 2085
MaeI CTAG 6 cut(s) 161, 1032, 1071, 1937, 2003, 2216
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 5 cut(s) 926, 977, 1513, 1714, 2031
MalI GATC 7 cut(s) 475, 492, 1019, 1558, 2007, 2156, 2256
MboI GATC 7 cut(s) 473, 490, 1017, 1556, 2005, 2154, 2254
MboII GAAGA 5 cut(s) 293, 1775, 1939, 2046, 2186
MfeI CAATTG 2 cut(s) 280, 1775
MflI RGATCY 2 cut(s) 2005, 2154
MhlI GDGCHC 3 cut(s) 527, 787, 1142
MluCI AATT 9 cut(s) 175, 205, 280, 904, 1395, 1428, 1473, 1775, 2014
MluI ACGCGT 1 cut(s) 671
MlyI GAGTC 2 cut(s) 965, 1924
MmeI TCCRAC 3 cut(s) 1018, 1169, 2220
MnlI CCTC 8 cut(s) 28, 118, 430, 1651, 1873, 2079, 2187, 2212
Mph1103I ATGCAT 2 cut(s) 658, 1267
MroXI GAANNNNTTC 2 cut(s) 8, 141
MseI TTAA 6 cut(s) 230, 318, 441, 762, 1418, 1677
MslI CAYNNNNRTG 2 cut(s) 567, 1919
MspI CCGG 2 cut(s) 848, 1860
MspR9I CCNGG 3 cut(s) 1006, 2080, 2124
MunI CAATTG 2 cut(s) 280, 1775
Mva1269I GAATGC 2 cut(s) 1015, 1321
MvaI CCWGG 3 cut(s) 1006, 2080, 2124
MvnI CGCG 1 cut(s) 673
MwoI GCNNNNNNNGC 5 cut(s) 146, 611, 824, 1052, 1448
NcoI CCATGG 1 cut(s) 1788
NdeI CATATG 1 cut(s) 1083
NdeII GATC 7 cut(s) 473, 490, 1017, 1556, 2005, 2154, 2254
NlaIV GGNNCC 3 cut(s) 277, 1730, 2156
NmuCI GTSAC 2 cut(s) 926, 977
NsiI ATGCAT 2 cut(s) 658, 1267
NspI RCATGY 5 cut(s) 325, 934, 1339, 1440, 1543
PaeI GCATGC 1 cut(s) 1339
PceI AGGCCT 1 cut(s) 1402
PciI ACATGT 3 cut(s) 321, 930, 1539
PcsI WCGNNNNNNNCGW 1 cut(s) 677
PctI GAATGC 2 cut(s) 1015, 1321
PdmI GAANNNNTTC 2 cut(s) 8, 141
PfeI GAWTC 6 cut(s) 255, 307, 1301, 1468, 1597, 1793
PfoI TCCNGGA 1 cut(s) 1004
PkrI GCNGC 7 cut(s) 1080, 1192, 1341, 1773, 1942, 1984, 2023
Ple19I CGATCG 1 cut(s) 476
PleI GAGTC 2 cut(s) 964, 1924
PpsI GAGTC 2 cut(s) 964, 1924
PpuMI RGGWCCY 1 cut(s) 1729
PscI ACATGT 3 cut(s) 321, 930, 1539
Psp124BI GAGCTC 1 cut(s) 1142
Psp5II RGGWCCY 1 cut(s) 1729
Psp6I CCWGG 3 cut(s) 1004, 2078, 2122
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 3 cut(s) 1004, 2078, 2122
PspN4I GGNNCC 3 cut(s) 277, 1730, 2156
PspPI GGNCC 2 cut(s) 276, 1729
PspPPI RGGWCCY 1 cut(s) 1729
PsrI GAACNNNNNNTAC 2 cut(s) 2103, 2135
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 2005, 2154
PvuI CGATCG 1 cut(s) 476
RsaI GTAC 4 cut(s) 629, 1122, 1506, 1995
RsaNI GTAC 4 cut(s) 628, 1121, 1505, 1994
RseI CAYNNNNRTG 2 cut(s) 567, 1919
SacI GAGCTC 1 cut(s) 1142
SaqAI TTAA 6 cut(s) 230, 318, 441, 762, 1418, 1677
SatI GCNGC 7 cut(s) 1079, 1191, 1340, 1772, 1941, 1983, 2022
Sau3AI GATC 7 cut(s) 473, 490, 1017, 1556, 2005, 2154, 2254
Sau96I GGNCC 2 cut(s) 276, 1729
SchI GAGTC 2 cut(s) 965, 1924
ScrFI CCNGG 3 cut(s) 1006, 2080, 2124
SduI GDGCHC 3 cut(s) 527, 787, 1142
SfaNI GCATC 9 cut(s) 340, 643, 905, 1033, 1065, 1252, 1460, 1853, 2085
SfcI CTRYAG 2 cut(s) 40, 237
SinI GGWCC 2 cut(s) 276, 1729
SmiMI CAYNNNNRTG 2 cut(s) 567, 1919
SmlI CTYRAG 1 cut(s) 1667
SmoI CTYRAG 1 cut(s) 1667
SphI GCATGC 1 cut(s) 1339
Sse9I AATT 9 cut(s) 175, 205, 280, 904, 1395, 1428, 1473, 1775, 2014
SseBI AGGCCT 1 cut(s) 1402
SsiI CCGC 5 cut(s) 216, 834, 1055, 1771, 1877
SspI AATATT 1 cut(s) 9
SspMI CTAG 6 cut(s) 161, 1032, 1071, 1937, 2003, 2216
SstI GAGCTC 1 cut(s) 1142
StuI AGGCCT 1 cut(s) 1402
StyD4I CCNGG 3 cut(s) 1004, 2078, 2122
StyI CCWWGG 1 cut(s) 1788
TaaI ACNGT 5 cut(s) 44, 970, 1207, 1489, 1519
TaiI ACGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 472, 1257, 2200
TaqII GACCGA 1 cut(s) 1002
TasI AATT 9 cut(s) 175, 205, 280, 904, 1395, 1428, 1473, 1775, 2014
TatI WGTACW 4 cut(s) 627, 1120, 1504, 1993
TauI GCSGC 1 cut(s) 1774
TfiI GAWTC 6 cut(s) 255, 307, 1301, 1468, 1597, 1793
Tru1I TTAA 6 cut(s) 230, 318, 441, 762, 1418, 1677
Tru9I TTAA 6 cut(s) 230, 318, 441, 762, 1418, 1677
TscAI CASTG 3 cut(s) 411, 1210, 1969
TseFI GTSAC 2 cut(s) 926, 977
TseI GCWGC 6 cut(s) 1078, 1190, 1339, 1940, 1982, 2021
Tsp45I GTSAC 2 cut(s) 926, 977
TspRI CASTG 3 cut(s) 411, 1210, 1969
VpaK11BI GGWCC 2 cut(s) 276, 1729
XapI RAATTY 1 cut(s) 1473
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 5 cut(s) 325, 934, 1339, 1440, 1543
XcmI CCANNNNNNNNNTGG 1 cut(s) 2130
XmiI GTMKAC 3 cut(s) 118, 1162, 1544
XmnI GAANNNNTTC 2 cut(s) 8, 141
XspI CTAG 6 cut(s) 161, 1032, 1071, 1937, 2003, 2216
Zsp2I ATGCAT 2 cut(s) 658, 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.