RchiOBHm_Chr3g0469211

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016880
Physical Location & Seq
Forward (+)
15029158 .. 15030726
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGTTCTATGTCCAACTGGGCATAGGCACTCCGGCTTTTGATACCGTAAGCCCCATGACCTGGTTACAGGTTCCAGAGCGCGAGCTTTGCTTTCCTGTGGACGAGGGAGGGTCCTTCGACCCCAACCACTCCTCTACGTTTACATTGTTGAGCTCTGGCGACCCGATGTGCTCTCCTCCCCTCGGCAATATTCCATTGTCCAACGGCTCATGCGACTACAACCTTGGATATAGCAAGGGATTTTTCAGCACGGACATACTCTCATACTCTGTTGATGATGCTGCTGCTACCGAGGTTTCACTTAACGTGTCTTTCGGTTGCGGCTTATTCAATCAATTGGCTTTCGGTGGTGACGACGAATCAGGGAATCCCATCTCCGGTGTGATGGGATTGGGTCTCGGTCATCCTTCCGGTCTCCTTACCCAACTCCGGCCGGTCATGATGGACCGGTTTTCCTACTGCATTCCACCTCTGTTTCCAGTTTCCAATAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

165

Amino Acids

17.65

Weight (kDa)

4.19

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 2 - 155 2.9e-19 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 60
AccII CGCG 1 cut(s) 81
AciI CCGC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 431
AfiI CCNNNNNNNGG 5 cut(s) 60, 182, 377, 429, 492
AflIII ACRYGT 1 cut(s) 306
AgeI ACCGGT 1 cut(s) 447
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 2 cut(s) 85, 153
AluI AGCT 2 cut(s) 85, 153
Alw21I GWGCWC 2 cut(s) 155, 173
Alw26I GTCTC 2 cut(s) 401, 419
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 281, 284
AsiGI ACCGGT 1 cut(s) 447
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 111, 445
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 2 cut(s) 111, 445
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 155, 173
BbvI GCAGC 2 cut(s) 268, 271
BccI CCATC 3 cut(s) 379, 380, 436
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 401, 419
BisI GCNGC 3 cut(s) 282, 285, 322
BlsI GCNGC 3 cut(s) 283, 286, 323
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 2 cut(s) 111, 445
BmgT120I GGNCC 2 cut(s) 111, 445
BmiI GGNNCC 2 cut(s) 72, 112
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 26
BsaI GGTCTC 2 cut(s) 401, 419
BsaJI CCNNGG 3 cut(s) 181, 223, 291
BsaWI WCCGGW 3 cut(s) 377, 410, 447
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 182, 377, 429, 492
Bse118I RCCGGY 2 cut(s) 433, 447
Bse1I ACTGG 2 cut(s) 21, 479
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 3 cut(s) 181, 223, 291
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 5 cut(s) 60, 182, 377, 429, 492
BseNI ACTGG 2 cut(s) 21, 479
BseRI GAGGAG 2 cut(s) 121, 165
BseX3I CGGCCG 1 cut(s) 431
BseXI GCAGC 2 cut(s) 268, 271
Bsh1236I CGCG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 434
BshFI GGCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 434
BsiHKAI GWGCWC 2 cut(s) 155, 173
BsiSI CCGG 6 cut(s) 32, 378, 411, 430, 434, 448
BslI CCNNNNNNNGG 5 cut(s) 60, 182, 377, 429, 492
BsmAI GTCTC 2 cut(s) 401, 419
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 1 cut(s) 433
Bso31I GGTCTC 2 cut(s) 401, 419
Bsp1286I GDGCHC 2 cut(s) 155, 173
BspACI CCGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 433
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 72, 112
BspTNI GGTCTC 2 cut(s) 401, 419
BsrFI RCCGGY 2 cut(s) 433, 447
BsrI ACTGG 2 cut(s) 21, 479
BssAI RCCGGY 2 cut(s) 433, 447
BssECI CCNNGG 3 cut(s) 181, 223, 291
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 401, 419
BstMCI CGRYCG 1 cut(s) 434
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 268, 271
BstZI CGGCCG 1 cut(s) 431
BsuRI GGCC 1 cut(s) 433
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 83
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 81
Cfr10I RCCGGY 2 cut(s) 433, 447
Cfr13I GGNCC 2 cut(s) 111, 445
CsiI ACCWGGT 1 cut(s) 59
CspAI ACCGGT 1 cut(s) 447
CviAII CATG 3 cut(s) 55, 210, 439
CviJI RGCY 8 cut(s) 35, 51, 85, 153, 207, 324, 341, 433
CviKI_1 RGCY 8 cut(s) 35, 51, 85, 153, 207, 324, 341, 433
EaeI YGGCCR 1 cut(s) 431
EagI CGGCCG 1 cut(s) 431
Ecl136II GAGCTC 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 2 cut(s) 401, 419
Eco47I GGWCC 2 cut(s) 111, 445
Eco52I CGGCCG 1 cut(s) 431
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 3 cut(s) 58, 213, 442
FaiI YATR 8 cut(s) 9, 23, 56, 211, 231, 257, 265, 440
FatI CATG 3 cut(s) 54, 209, 438
Fnu4HI GCNGC 3 cut(s) 282, 285, 322
FokI GGATG 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 282, 285, 322
GlaI GCGC 1 cut(s) 80
GluI GCNGC 3 cut(s) 282, 285, 322
HaeIII GGCC 1 cut(s) 433
HapII CCGG 6 cut(s) 32, 378, 411, 430, 434, 448
HhaI GCGC 1 cut(s) 81
Hin1II CATG 3 cut(s) 58, 213, 442
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 2 cut(s) 359, 367
HpaII CCGG 6 cut(s) 32, 378, 411, 430, 434, 448
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 100, 141
Hpy188III TCNNGA 2 cut(s) 74, 439
Hpy8I GTNNAC 2 cut(s) 100, 141
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 124, 417, 486
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 137, 306
HpyCH4V TGCA 1 cut(s) 462
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpySE526I ACGT 2 cut(s) 137, 306
Hsp92II CATG 3 cut(s) 58, 213, 442
HspAI GCGC 1 cut(s) 79
Lsp1109I GCAGC 2 cut(s) 268, 271
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 59
MaeII ACGT 2 cut(s) 137, 306
MaeIII GTNAC 2 cut(s) 63, 350
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 2 cut(s) 155, 173
MluCI AATT 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 37, 225
MnlI CCTC 7 cut(s) 97, 101, 142, 186, 191, 286, 480
MseI TTAA 1 cut(s) 303
MspI CCGG 6 cut(s) 32, 378, 411, 430, 434, 448
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 87
NlaIII CATG 3 cut(s) 58, 213, 442
NlaIV GGNNCC 2 cut(s) 72, 112
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 350
PagI TCATGA 1 cut(s) 438
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 351
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 359, 367
PflMI CCANNNNNTGG 1 cut(s) 60
PinAI ACCGGT 1 cut(s) 447
PkrI GCNGC 3 cut(s) 283, 286, 323
PpuMI RGGWCCY 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 72, 112
PspPI GGNCC 2 cut(s) 111, 445
PspPPI RGGWCCY 1 cut(s) 111
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 282, 285, 322
Sau96I GGNCC 2 cut(s) 111, 445
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 2 cut(s) 155, 173
SexAI ACCWGGT 1 cut(s) 59
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 2 cut(s) 111, 445
Sse9I AATT 1 cut(s) 335
SsiI CCGC 1 cut(s) 321
SspI AATATT 1 cut(s) 190
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 140, 309
TaqI TCGA 1 cut(s) 117
TaqII GACCGA 1 cut(s) 389
TasI AATT 1 cut(s) 335
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 2 cut(s) 359, 367
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 281, 284
Tsp45I GTSAC 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 111, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.