Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009443

Physical Location & Seq

Genomic Coordinates Forward (+)

15898500 .. 15901887

Gene Structure 3388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTTCCCAGCTATTGAGGCGCGTAATCGGAAGCCGCTCCACCCACTTTCTCTCCGGCGCCGTGAATCCTTCCCCGACCTTGCTCTCATCGTCGTCTCCGGCAGCTAGGGTTTTCTCATCTACTTCCACTCCGATCACTGCCACCCTCTTCCCCGGCGACGGTATCGGCCCCGAGATCGCCGAGTCCGTCAAACAGATATTCAGAGAAGCTGAAGTCCCAATTGAATGGGAAGAGCACTATGTTGGGGAGCAAATAGATCCCAGGACTCAGAGTTTTCTGACATGGGAAAGTTTAGAGTCGGTACGAAGGAATAAGGTGGGCTTGAAAGGGCCGATGGCCACACCAATTGGGAAGGGTCATCGTTCATTGAATCTTACACTGAGGAAAGAACTGAATTTGTATGCAAATGTCAGACCTTGTTACAGCCTTCCTGGCTATAAGACTCGATATGATGATGTGGATCTTATCACTATCCGTGAGAATACCGAGGGGGAATACAGTGGACTTGAACATCAAGTGGTGAGAGGTGTTGTTGAAAGCCTCAAGATCATTACCCGTCAAGCTAGCTTGAGGGTGGCCGAGTATGCTTTTCATTATGCCAAGGCCCATGGAAGAGAAAGAGTGTCTGCAATACACAAAGCAAATATAATGCAGAAAACCGACGGTCTTTTTCTCAAGTGTTGCCGCGAAGTTGCAGAGAAGTACCCTGATATAAAGTATGAGGAAGTTGTCATTGATAATTGCTGTATGATGCTTGTGAAGAATCCAGCACTTTTTGATGTGCTAGTGATGCCTAACCTCTATGGTGATATTATTAGTGACCTTTGCGCTGGGTTGATAGGGGGTTTGGGCTTAACACCAAGCTGCAATATTGGTGAGGGAGGTATTGCCCTTGCTGAAGCTGTACATGGATCGGCACCTGATATTGCTGGAAAGAATTTGGCAAATCCAACTGCTCTGCTTTTGAGTGCTGTTACCATGCTTCGCCATTTGGAGCTCCATGATAAAGCTGATCGGATCCAGGATGCGATCCTGAAGACAATTGCAGAGGGCAAGTACCGTACTGCTGACCTTGGTGGCAAATCAACAACTACTGACTTTACACAAGCGATTTGTGATCATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

376

Amino Acids

41.16

Weight (kDa)

6.43

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	49 - 372	1.3e-108	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09810 AT5G03290
fragaria_vesca	FvH4_6g16070 FvH4_6g16070 FvH4_6g16070 FvH4_6g16070
malus_domestica	MD04G1096100.v1.1 MD12G1116100.v1.1
prunus_persica	Prupe.6G235200_v2.0.a1
pyrus_communis	pycom04g09100
rosa_chinensis	RchiOBHm_Chr3g0469901
rosa_laevigata	RLG00000024314
rosa_multiflora	Rmu_sc0009708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411380
rosa_rugosa	Rorug03G0105200 Rorug03G0105300 Rorug03G0105400
rosa_samantha	Rh3AG154300 Rh3BG178400 Rh3CG169000 Rh3DG196800
rosa_wichuraiana	Rw3G014530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	59, 919
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	2 cut(s)	24, 690
AciI	CCGC	2 cut(s)	37, 688
AclWI	GGATC	6 cut(s)	254, 471, 922, 1015, 1027, 1028
AcoI	YGGCCR	2 cut(s)	339, 579
AcsI	RAATTY	2 cut(s)	397, 940
AcuI	CTGAAG	3 cut(s)	234, 921, 1058
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	5 cut(s)	306, 707, 909, 1061, 1066
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	227, 328, 373, 512, 539
AjnI	CCWGG	3 cut(s)	263, 433, 1023
AluBI	AGCT	9 cut(s)	13, 107, 212, 566, 570, 867, 905, 1000, 1013
AluI	AGCT	9 cut(s)	13, 107, 212, 566, 570, 867, 905, 1000, 1013
Alw21I	GWGCWC	2 cut(s)	240, 1002
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	6 cut(s)	254, 471, 922, 1015, 1027, 1028
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	5 cut(s)	169, 332, 339, 579, 606
ApeKI	GCWGC	2 cut(s)	104, 867
ApoI	RAATTY	2 cut(s)	397, 940
AspLEI	GCGC	3 cut(s)	24, 62, 833
AspS9I	GGNCC	3 cut(s)	170, 332, 607
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	3 cut(s)	535, 821, 890
AsuNHI	GCTAGC	1 cut(s)	566
AvaI	CYCGRG	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	1020
BanI	GGYRCC	2 cut(s)	59, 919
BanII	GRGCYC	1 cut(s)	1002
BbsI	GAAGAC	1 cut(s)	1046
Bbv12I	GWGCWC	2 cut(s)	240, 1002
BbvI	GCAGC	2 cut(s)	116, 854
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	3 cut(s)	265, 435, 1025
BclI	TGATCA	1 cut(s)	1120
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	3 cut(s)	108, 567, 788
BfoI	RGCGCY	1 cut(s)	63
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	4 cut(s)	37, 105, 688, 868
BlsI	GCNGC	4 cut(s)	38, 106, 689, 869
Bme1390I	CCNGG	4 cut(s)	156, 265, 435, 1025
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	170, 332, 607
BmiI	GGNNCC	4 cut(s)	61, 172, 921, 1022
BmrFI	CCNGG	4 cut(s)	156, 265, 435, 1025
BmsI	GCATC	3 cut(s)	744, 783, 1018
BmtI	GCTAGC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	1046
BpuEI	CTTGAG	3 cut(s)	530, 592, 662
BpuMI	CCSGG	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	6 cut(s)	154, 263, 489, 603, 610, 1075
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	3 cut(s)	265, 435, 1025
BseDI	CCNNGG	6 cut(s)	154, 263, 489, 603, 610, 1075
BseGI	GGATG	1 cut(s)	1033
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	2 cut(s)	284, 374
BseXI	GCAGC	2 cut(s)	116, 854
BseYI	CCCAGC	2 cut(s)	9, 833
Bsh1236I	CGCG	2 cut(s)	24, 690
BshFI	GGCC	5 cut(s)	171, 334, 341, 581, 608
BshNI	GGYRCC	2 cut(s)	59, 919
BsiHKAI	GWGCWC	2 cut(s)	240, 1002
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	57, 101, 156
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	5 cut(s)	171, 334, 341, 581, 608
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	240, 1002
Bsp1407I	TGTACA	1 cut(s)	907
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	2 cut(s)	37, 688
BspANI	GGCC	5 cut(s)	171, 334, 341, 581, 608
BspCNI	CTCAG	2 cut(s)	283, 375
BspFNI	CGCG	2 cut(s)	24, 690
BspLI	GGNNCC	4 cut(s)	61, 172, 921, 1022
BspOI	GCTAGC	1 cut(s)	570
BspPI	GGATC	6 cut(s)	254, 471, 922, 1015, 1027, 1028
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	2 cut(s)	59, 919
BsrBI	CCGCTC	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	907
BssECI	CCNNGG	6 cut(s)	154, 263, 489, 603, 610, 1075
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	3 cut(s)	603, 610, 1075
Bst2UI	CCWGG	3 cut(s)	265, 435, 1025
Bst4CI	ACNGT	4 cut(s)	164, 503, 668, 1064
Bst6I	CTCTTC	3 cut(s)	155, 228, 610
BstACI	GRCGYC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	907
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	2 cut(s)	270, 383
BstDSI	CCRYGG	1 cut(s)	610
BstF5I	GGATG	1 cut(s)	1033
BstFNI	CGCG	2 cut(s)	24, 690
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	3 cut(s)	24, 62, 833
BstMAI	GTCTC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 435, 587, 793
BstNI	CCWGG	3 cut(s)	265, 435, 1025
BstSCI	CCNGG	4 cut(s)	154, 263, 433, 1023
BstUI	CGCG	2 cut(s)	24, 690
BstV1I	GCAGC	2 cut(s)	116, 854
BstV2I	GAAGAC	1 cut(s)	1046
BstX2I	RGATCY	3 cut(s)	259, 463, 1020
BstXI	CCANNNNNNTGG	1 cut(s)	228
BstYI	RGATCY	3 cut(s)	259, 463, 1020
BsuRI	GGCC	5 cut(s)	171, 334, 341, 581, 608
BtgI	CCRYGG	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	1033
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	138, 380, 508
Cac8I	GCNNGC	1 cut(s)	568
CfoI	GCGC	3 cut(s)	24, 62, 833
Cfr13I	GGNCC	3 cut(s)	170, 332, 607
Csp6I	GTAC	5 cut(s)	305, 706, 908, 1060, 1065
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	5 cut(s)	285, 611, 911, 982, 1004
CviQI	GTAC	5 cut(s)	305, 706, 908, 1060, 1065
DdeI	CTNAG	2 cut(s)	270, 383
DinI	GGCGCC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	339, 579
Eam1104I	CTCTTC	3 cut(s)	155, 228, 610
EarI	CTCTTC	3 cut(s)	155, 228, 610
Ecl136II	GAGCTC	1 cut(s)	1000
Eco130I	CCWWGG	3 cut(s)	603, 610, 1075
Eco24I	GRGCYC	1 cut(s)	1002
Eco53kI	GAGCTC	1 cut(s)	1000
Eco57I	CTGAAG	3 cut(s)	234, 921, 1058
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	1000
EcoRII	CCWGG	3 cut(s)	263, 433, 1023
EcoT14I	CCWWGG	3 cut(s)	603, 610, 1075
EcoT38I	GRGCYC	1 cut(s)	1002
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	3 cut(s)	603, 610, 1075
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	5 cut(s)	288, 614, 914, 985, 1007
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	5 cut(s)	284, 610, 910, 981, 1003
FbaI	TGATCA	1 cut(s)	1120
Fnu4HI	GCNGC	4 cut(s)	37, 105, 688, 868
FokI	GGATG	1 cut(s)	1040
FriOI	GRGCYC	1 cut(s)	1002
Fsp4HI	GCNGC	4 cut(s)	37, 105, 688, 868
FspBI	CTAG	3 cut(s)	108, 567, 788
GlaI	GCGC	3 cut(s)	23, 61, 832
GluI	GCNGC	4 cut(s)	37, 105, 688, 868
GsaI	CCCAGC	2 cut(s)	13, 837
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	5 cut(s)	171, 334, 341, 581, 608
HapII	CCGG	3 cut(s)	57, 101, 156
HhaI	GCGC	3 cut(s)	24, 62, 833
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	288, 614, 914, 985, 1007
Hin6I	GCGC	3 cut(s)	22, 60, 831
HinP1I	GCGC	3 cut(s)	22, 60, 831
HinfI	GANTC	7 cut(s)	67, 185, 268, 299, 373, 445, 766
HpaII	CCGG	3 cut(s)	57, 101, 156
HphI	GGTGA	3 cut(s)	535, 821, 890
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	8 cut(s)	32, 135, 206, 273, 282, 416, 1020, 1130
Hpy188III	TCNNGA	2 cut(s)	547, 1036
Hpy8I	GTNNAC	1 cut(s)	506
Hpy99I	CGWCG	3 cut(s)	97, 164, 668
HpyAV	CCTTC	4 cut(s)	81, 303, 349, 440
HpyCH4III	ACNGT	4 cut(s)	164, 503, 668, 1064
HpyCH4V	TGCA	6 cut(s)	407, 632, 655, 698, 870, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 435, 587, 793
HpyF3I	CTNAG	2 cut(s)	270, 383
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	288, 614, 914, 985, 1007
HspAI	GCGC	3 cut(s)	22, 60, 831
KasI	GGCGCC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	1120
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	4 cut(s)	44, 250, 997, 1005
Lsp1109I	GCAGC	2 cut(s)	116, 854
LweI	GCATC	3 cut(s)	744, 783, 1018
MaeI	CTAG	3 cut(s)	108, 567, 788
MaeIII	GTNAC	3 cut(s)	422, 821, 976
MbiI	CCGCTC	1 cut(s)	39
MboII	GAAGA	5 cut(s)	142, 245, 627, 775, 1051
MfeI	CAATTG	3 cut(s)	222, 348, 1044
MflI	RGATCY	3 cut(s)	259, 463, 1020
MhlI	GDGCHC	2 cut(s)	240, 1002
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	6 cut(s)	222, 348, 397, 742, 940, 1044
MluNI	TGGCCA	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	4 cut(s)	194, 262, 308, 439
MmeI	TCCRAC	1 cut(s)	977
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	857
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	3 cut(s)	57, 101, 156
MspR9I	CCNGG	4 cut(s)	156, 265, 435, 1025
MunI	CAATTG	3 cut(s)	222, 348, 1044
MvaI	CCWGG	3 cut(s)	265, 435, 1025
MvnI	CGCG	2 cut(s)	24, 690
MwoI	GCNNNNNNNGC	4 cut(s)	19, 435, 587, 793
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	610
NheI	GCTAGC	1 cut(s)	566
NlaIII	CATG	5 cut(s)	288, 614, 914, 985, 1007
NlaIV	GGNNCC	4 cut(s)	61, 172, 921, 1022
NmeAIII	GCCGAG	2 cut(s)	208, 607
NmuCI	GTSAC	1 cut(s)	821
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	67, 373, 766
PfoI	TCCNGGA	1 cut(s)	1023
PkrI	GCNGC	4 cut(s)	38, 106, 689, 869
PleI	GAGTC	4 cut(s)	193, 262, 307, 439
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	4 cut(s)	193, 262, 307, 439
Psp124BI	GAGCTC	1 cut(s)	1002
Psp6I	CCWGG	3 cut(s)	263, 433, 1023
PspFI	CCCAGC	2 cut(s)	9, 833
PspGI	CCWGG	3 cut(s)	263, 433, 1023
PspN4I	GGNNCC	4 cut(s)	61, 172, 921, 1022
PspPI	GGNCC	3 cut(s)	170, 332, 607
PsuI	RGATCY	3 cut(s)	259, 463, 1020
RsaI	GTAC	5 cut(s)	306, 707, 909, 1061, 1066
RsaNI	GTAC	5 cut(s)	305, 706, 908, 1060, 1065
SacI	GAGCTC	1 cut(s)	1002
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	857
SatI	GCNGC	4 cut(s)	37, 105, 688, 868
Sau96I	GGNCC	3 cut(s)	170, 332, 607
SchI	GAGTC	4 cut(s)	194, 262, 308, 439
ScrFI	CCNGG	4 cut(s)	156, 265, 435, 1025
SduI	GDGCHC	2 cut(s)	240, 1002
SfaNI	GCATC	3 cut(s)	744, 783, 1018
SfoI	GGCGCC	1 cut(s)	61
SmlI	CTYRAG	3 cut(s)	545, 571, 677
SmoI	CTYRAG	3 cut(s)	545, 571, 677
Sse9I	AATT	6 cut(s)	222, 348, 397, 742, 940, 1044
SsiI	CCGC	2 cut(s)	37, 688
SspDI	GGCGCC	1 cut(s)	59
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	3 cut(s)	108, 567, 788
SstI	GAGCTC	1 cut(s)	1002
StyD4I	CCNGG	4 cut(s)	154, 263, 433, 1023
StyI	CCWWGG	3 cut(s)	603, 610, 1075
TaaI	ACNGT	4 cut(s)	164, 503, 668, 1064
TaqI	TCGA	1 cut(s)	448
TasI	AATT	6 cut(s)	222, 348, 397, 742, 940, 1044
TatI	WGTACW	1 cut(s)	907
TauI	GCSGC	2 cut(s)	39, 690
TfiI	GAWTC	3 cut(s)	67, 373, 766
Tru1I	TTAA	1 cut(s)	857
Tru9I	TTAA	1 cut(s)	857
TscAI	CASTG	3 cut(s)	145, 387, 508
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	2 cut(s)	104, 867
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	2 cut(s)	357, 584
TspGWI	ACGGA	2 cut(s)	178, 467
TspRI	CASTG	3 cut(s)	145, 387, 508
XapI	RAATTY	2 cut(s)	397, 940
XspI	CTAG	3 cut(s)	108, 567, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.