RchiOBHm_Chr3g0475441
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016609
Physical Location & Seq
Reverse (-)
21222830 .. 21223671
842 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
ATGGGCTTCTCCACCCCCGAGTTCCGCCGCCTCGTCGGCATGTGCCCCGAAATCCTCGCCTCCCGCGTCTCCGACATCATCCCCATCTTCACCTTCCTCCTCCGCGAGGCCCGCGTCAACGGCTCCGATCTCAAGCGCGTCATAAACCGACGACCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCGCCCCACCCTTTACTTCCTCCAGTCCATCGGCATAGCCGACGTCAACAAGCACACCTCTCTGCTCTCCTGCAGCGTCGAGGACAAGCTCCAGCCCCGCGTCGACTACCTCGAAAAAATCGGGTTTTCGCGGCGGGACGCATTGGCCATGTTCCGGCGGTTCCCGCAGCTGTTCTGCTACAGCATTGAGCATAATTTCGAGCCCAAGTTCAATTACTTTGTGGTGGAAATGGGGAGGGAGTTGAAGGAGCTCAAGGAGTTTCCGCACTACTTCTCGTTTAGCTTAGAGAATCGGATTCGGCCGAGGCATCAGAGGTGTGTGGACAAGGGTGTGTGCTTTCCTTTGCCTATTTTGTTAAAGACCAGTGAGGCCAGGTTCCGGGATAGATTGGAGGTTTGTTGTAATTCTTCTATCCCGTTGAGAAATTCTCCCTTGTGGTGTACAAATTCCATTTCTGGTGATTTAGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

220

Amino Acids

25.73

Weight (kDa)

9.6

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 34 - 189 7.5e-34 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 291
AccII CGCG 6 cut(s) 66, 105, 114, 138, 288, 319
AcoI YGGCCR 2 cut(s) 333, 488
AcsI RAATTY 2 cut(s) 613, 634
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 3 cut(s) 106, 342, 567
AgsI TTSAA 2 cut(s) 400, 433
AjnI CCWGG 1 cut(s) 560
AluBI AGCT 4 cut(s) 277, 358, 439, 471
AluI AGCT 4 cut(s) 277, 358, 439, 471
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 4 cut(s) 108, 333, 488, 558
ApeKI GCWGC 2 cut(s) 261, 355
ApoI RAATTY 2 cut(s) 613, 634
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 82, 659
AvaI CYCGRG 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 47
BalI TGGCCA 1 cut(s) 335
BanII GRGCYC 2 cut(s) 393, 441
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 273, 367
BccI CCATC 2 cut(s) 92, 224
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 562
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 2 cut(s) 259, 367
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 4 cut(s) 28, 262, 320, 356
BlsI GCNGC 4 cut(s) 29, 263, 321, 357
Bme1390I CCNGG 2 cut(s) 562, 569
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 124, 350, 566
BmrFI CCNGG 2 cut(s) 562, 569
BmsI GCATC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 601, 633
BpmI CTGGAG 3 cut(s) 154, 194, 263
BpuEI CTTGAG 2 cut(s) 116, 425
BpuMI CCSGG 1 cut(s) 569
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 342, 567
Bse1I ACTGG 2 cut(s) 211, 552
BseBI CCWGG 1 cut(s) 562
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 106, 342, 567
BseNI ACTGG 2 cut(s) 211, 552
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 47
BseX3I CGGCCG 1 cut(s) 488
BseXI GCAGC 2 cut(s) 273, 367
Bsh1236I CGCG 6 cut(s) 66, 105, 114, 138, 288, 319
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 4 cut(s) 110, 335, 490, 560
BsiEI CGRYCG 1 cut(s) 491
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 2 cut(s) 343, 568
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 3 cut(s) 106, 342, 567
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 4 cut(s) 110, 335, 490, 560
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 3 cut(s) 47, 393, 441
Bsp1407I TGTACA 1 cut(s) 629
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 4 cut(s) 110, 335, 490, 560
BspFNI CGCG 6 cut(s) 66, 105, 114, 138, 288, 319
BspLI GGNNCC 3 cut(s) 124, 350, 566
BspMAI CTGCAG 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 629
BsrI ACTGG 2 cut(s) 211, 552
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 562
BstACI GRCGYC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 112, 165
BstDEI CTNAG 1 cut(s) 472
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 6 cut(s) 66, 105, 114, 138, 288, 319
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 127
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 4 cut(s) 36, 111, 120, 352
BstNI CCWGG 1 cut(s) 562
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 560, 567
BstSFI CTRYAG 2 cut(s) 259, 367
BstSLI GKGCMC 1 cut(s) 47
BstUI CGCG 6 cut(s) 66, 105, 114, 138, 288, 319
BstV1I GCAGC 2 cut(s) 273, 367
BstZI CGGCCG 1 cut(s) 488
BsuRI GGCC 4 cut(s) 110, 335, 490, 560
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 2 cut(s) 112, 165
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 7 cut(s) 55, 103, 127, 163, 253, 277, 335
Csp6I GTAC 1 cut(s) 630
CviAII CATG 2 cut(s) 40, 337
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 1 cut(s) 472
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 333, 488
EagI CGGCCG 1 cut(s) 488
EciI GGCGGA 2 cut(s) 14, 179
Ecl136II GAGCTC 1 cut(s) 439
EclXI CGGCCG 1 cut(s) 488
Eco24I GRGCYC 2 cut(s) 393, 441
Eco52I CGGCCG 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 560
EcoT38I GRGCYC 2 cut(s) 393, 441
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 2 cut(s) 43, 340
FaiI YATR 5 cut(s) 41, 143, 224, 338, 381
FaqI GGGAC 1 cut(s) 338
FatI CATG 2 cut(s) 39, 336
FauI CCCGC 5 cut(s) 71, 119, 293, 315, 360
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 28, 262, 320, 356
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 2 cut(s) 393, 441
Fsp4HI GCNGC 4 cut(s) 28, 262, 320, 356
GlaI GCGC 1 cut(s) 137
GluI GCNGC 4 cut(s) 28, 262, 320, 356
GsuI CTGGAG 3 cut(s) 154, 194, 263
HaeIII GGCC 4 cut(s) 110, 335, 490, 560
HapII CCGG 2 cut(s) 343, 568
HgaI GACGC 7 cut(s) 55, 103, 127, 163, 253, 277, 335
HhaI GCGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 2 cut(s) 43, 340
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HincII GTYRAC 3 cut(s) 118, 235, 292
HindII GTYRAC 3 cut(s) 118, 235, 292
HinfI GANTC 2 cut(s) 478, 484
HpaII CCGG 2 cut(s) 343, 568
HphI GGTGA 2 cut(s) 82, 659
Hpy166II GTNNAC 5 cut(s) 118, 235, 292, 511, 630
Hpy188I TCNGA 4 cut(s) 73, 127, 483, 501
Hpy8I GTNNAC 5 cut(s) 118, 235, 292, 511, 630
Hpy99I CGWCG 5 cut(s) 38, 153, 233, 269, 293
HpyAV CCTTC 2 cut(s) 103, 427
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 111, 120, 352
HpyF3I CTNAG 1 cut(s) 472
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 2 cut(s) 43, 340
HspAI GCGC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 128, 282, 436
Lsp1109I GCAGC 2 cut(s) 273, 367
LweI GCATC 1 cut(s) 505
MaeII ACGT 1 cut(s) 231
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 79, 588
MhlI GDGCHC 3 cut(s) 47, 393, 441
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 5 cut(s) 382, 400, 592, 613, 634
MluNI TGGCCA 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 335
MscI TGGCCA 1 cut(s) 335
MseI TTAA 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 2 cut(s) 343, 568
MspR9I CCNGG 2 cut(s) 562, 569
MvaI CCWGG 1 cut(s) 562
MvnI CGCG 6 cut(s) 66, 105, 114, 138, 288, 319
MwoI GCNNNNNNNGC 4 cut(s) 36, 111, 120, 352
NciI CCSGG 1 cut(s) 569
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 43, 340
NlaIV GGNNCC 3 cut(s) 124, 350, 566
NmeAIII GCCGAG 1 cut(s) 516
NspI RCATGY 1 cut(s) 43
PcsI WCGNNNNNNNCGW 4 cut(s) 63, 171, 225, 297
PfeI GAWTC 2 cut(s) 478, 484
PfoI TCCNGGA 1 cut(s) 567
PkrI GCNGC 4 cut(s) 29, 263, 321, 357
Psp124BI GAGCTC 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 560
PspGI CCWGG 1 cut(s) 560
PspN4I GGNNCC 3 cut(s) 124, 350, 566
PspPI GGNCC 1 cut(s) 109
PstI CTGCAG 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
SacI GAGCTC 1 cut(s) 441
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 4 cut(s) 28, 262, 320, 356
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 562, 569
SduI GDGCHC 3 cut(s) 47, 393, 441
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 2 cut(s) 259, 367
SmlI CTYRAG 2 cut(s) 131, 440
SmoI CTYRAG 2 cut(s) 131, 440
Sse9I AATT 5 cut(s) 382, 400, 592, 613, 634
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 560, 567
TaiI ACGT 1 cut(s) 234
TaqI TCGA 4 cut(s) 267, 291, 300, 387
TasI AATT 5 cut(s) 382, 400, 592, 613, 634
TatI WGTACW 1 cut(s) 629
TauI GCSGC 2 cut(s) 30, 322
TfiI GAWTC 2 cut(s) 478, 484
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 1 cut(s) 559
TseI GCWGC 2 cut(s) 261, 355
TspRI CASTG 1 cut(s) 559
XagI CCTNNNNNAGG 1 cut(s) 104
XapI RAATTY 2 cut(s) 613, 634
XceI RCATGY 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 291
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.