Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015658

Physical Location & Seq

Genomic Coordinates Forward (+)

21569130 .. 21570338

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCAAGGAAAGATGAACTCGAGAAGCGGCGGCAGCGGAACCAACTGGTTCCCTCGGCTTGCGGTGGCTGTGTGCTTAAACGTCCTCCTTTTGACGACGAGTACTACTACCAGTCGCTAGATACTGGTTCCCTCAAAAACGATATTATCATTGAGATACTGAAAAGGCTACCAGCCAAGTCTTTATTGCGATTTCGTGCTGTATGCAAGTCATGGTGTGCTTTCATCTCTAATTCTTCTCATTTTAGTAGGAAGCATCTAAGTCACGCAGTCACCGATAGCAGCAGCTTCCGGGTCCTTTATTCATTGATGCCTCCCCTCTCCGTAGACTGCGAAGCTTTATTGAAGAAAGATGGTCCTGTTCAAGGCAGAAAGCTTAAACTACCCAACCGTTACAAACAGCACCGGCGAACGACTGGCAGTTTAAAACGTGAGGTTGCGAATATTGTTGTGGGTTCTTGCAATGGCTTGATATGTCTTCTATTAAAATGGGGCTACGTTGTCTTATGGAACCCTTGTACTAGAAAAGTCAACAAATTACCAAAGCAAACTCATGTTAAGACACATCAAACGTTTTACGGTTTCGGCTACGATTCCTGCACTGAAAGGTACAAGATCATTCTGGGGGACATGCCCTCGATGCCTAAAACATTAGCCCATACGGCAATTTTTACAACATCATGGAGGAATTTTGATGACGTTCAAATTCATAACGAAATATATGGTCGTGGATGCTTACTAAACGGAGCTCTACATTGGATAGAGAGTGCCCAATGGGATGCCATCGAGGATGACCATAGTGGCCCATCAAGATTGAGTATCATCTCTTTTGATTTGGCAGAGGAGAAATTTCAGAAGCTGGTGTCGTTACCCTCTCTTGTAACTCAAGATACGAGCGCAAAAGTTTGGACTTCTAGAGATTCTATCTTTGTATGCTTTTGGAATGGTACAGTCCGTACAGAGACAAAATTGACAATATGGGAGATGAAGGAATATGGGATTGAGGATTCCTGGACCAATGTTGGGCATATTTCATTCAACAGTCATCCCGAGTGTTATTGGCCGCTGAAATTTTTTGAGGATGGTAACTTTTTGATGACTATATGCGGGGGCTTGCTAGTATATGATCCGGAGAAGAAGACAATCAGATCTAACAGTGATTTGCCCATCTTGTACATGGAGACTTTAGTTTCACCATTCACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

402

Amino Acids

46.11

Weight (kDa)

8.91

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	47 - 80	2.8e-08	F-box domain
F-box-like	PF12937	47 - 84	3.3e-07	F-box-like
FBA_1	PF07734	145 - 354	1.7e-23	F-box associated beta propeller domain
FBA_3	PF08268	146 - 332	5.9e-16	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20202
rosa_chinensis	RchiOBHm_Chr2g0110611 RchiOBHm_Chr3g0475741 RchiOBHm_Chr4g0403441 RchiOBHm_Chr4g0436211 RchiOBHm_Chr5g0080041 RchiOBHm_Chr6g0263871 RchiOBHm_Chr7g0206081
rosa_laevigata	RLG00000015933 RLG00000023820 RLG00000035556
rosa_multiflora	Rmu_sc0000539.1_g000073
rosa_roxburghii	Rroxscaffold_6G00405900
rosa_rugosa	Rorug03G0151100
rosa_samantha	Rh5AG521600
rosa_wichuraiana	Rw3G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	1129
AciI	CCGC	6 cut(s)	28, 31, 37, 63, 1064, 1107
AclI	AACGTT	1 cut(s)	572
AclWI	GGATC	1 cut(s)	1121
AcoI	YGGCCR	1 cut(s)	1061
AcsI	RAATTY	4 cut(s)	688, 705, 848, 1070
AfaI	GTAC	6 cut(s)	104, 520, 611, 949, 958, 1175
AfiI	CCNNNNNNNGG	2 cut(s)	365, 1023
AgsI	TTSAA	4 cut(s)	346, 365, 704, 1039
AjnI	CCWGG	1 cut(s)	1010
AluBI	AGCT	6 cut(s)	288, 338, 376, 749, 859, 1206
AluI	AGCT	6 cut(s)	288, 338, 376, 749, 859, 1206
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	2 cut(s)	956, 1175
AlwI	GGATC	1 cut(s)	1121
AlwNI	CAGNNNCTG	1 cut(s)	859
Ama87I	CYCGRG	2 cut(s)	20, 1049
Aor13HI	TCCGGA	1 cut(s)	1129
AoxI	GGCC	2 cut(s)	802, 1061
ApeKI	GCWGC	3 cut(s)	34, 282, 285
ApoI	RAATTY	4 cut(s)	688, 705, 848, 1070
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	4 cut(s)	295, 356, 803, 1014
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	265, 1185, 1192
AvaI	CYCGRG	2 cut(s)	20, 1049
AvaII	GGWCC	3 cut(s)	295, 356, 1014
BaeGI	GKGCMC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	2 cut(s)	470, 1145
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	3 cut(s)	46, 294, 297
BccI	CCATC	5 cut(s)	347, 791, 814, 1076, 1175
BceAI	ACGGC	1 cut(s)	678
BciT130I	CCWGG	1 cut(s)	1012
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	956, 1175
BfaI	CTAG	4 cut(s)	119, 522, 915, 1118
BglI	GCCNNNNNGGC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	1148
BisI	GCNGC	6 cut(s)	29, 32, 35, 283, 286, 1064
BlsI	GCNGC	6 cut(s)	30, 33, 36, 284, 287, 1065
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	293, 1012
Bme18I	GGWCC	3 cut(s)	295, 356, 1014
BmeT110I	CYCGRG	2 cut(s)	20, 1049
BmgT120I	GGNCC	4 cut(s)	295, 356, 803, 1014
BmiI	GGNNCC	5 cut(s)	41, 51, 130, 296, 512
BmrFI	CCNGG	2 cut(s)	293, 1012
BmsI	GCATC	5 cut(s)	265, 300, 630, 722, 769
BpiI	GAAGAC	2 cut(s)	470, 1145
BpuEI	CTTGAG	1 cut(s)	870
BpuMI	CCSGG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	1129
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 1023
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	4 cut(s)	51, 112, 130, 421
Bse3DI	GCAATG	1 cut(s)	469
BseAI	TCCGGA	1 cut(s)	1129
BseBI	CCWGG	1 cut(s)	1012
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	5 cut(s)	737, 784, 796, 1045, 1087
BseLI	CCNNNNNNNGG	2 cut(s)	365, 1023
BseMI	GCAATG	1 cut(s)	469
BseNI	ACTGG	4 cut(s)	51, 112, 130, 421
BseRI	GAGGAG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	3 cut(s)	46, 294, 297
BsgI	GTGCAG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	804, 1063
BsiHKAI	GWGCWC	1 cut(s)	751
BsiHKCI	CYCGRG	2 cut(s)	20, 1049
BsiSI	CCGG	3 cut(s)	292, 406, 1130
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	365, 1023
BsmAI	GTCTC	2 cut(s)	956, 1175
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	804, 1063
BsoBI	CYCGRG	2 cut(s)	20, 1049
Bsp1286I	GDGCHC	2 cut(s)	751, 772
Bsp13I	TCCGGA	1 cut(s)	1129
Bsp1407I	TGTACA	1 cut(s)	1173
Bsp143I	GATC	3 cut(s)	615, 1126, 1148
BspACI	CCGC	6 cut(s)	28, 31, 37, 63, 1064, 1107
BspANI	GGCC	2 cut(s)	804, 1063
BspEI	TCCGGA	1 cut(s)	1129
BspLI	GGNNCC	5 cut(s)	41, 51, 130, 296, 512
BspPI	GGATC	1 cut(s)	1121
BsrDI	GCAATG	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	1173
BsrI	ACTGG	4 cut(s)	51, 112, 130, 421
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	615, 1126, 1148
Bst2UI	CCWGG	1 cut(s)	1012
Bst4CI	ACNGT	5 cut(s)	392, 581, 952, 1043, 1157
BstAUI	TGTACA	1 cut(s)	1173
BstC8I	GCNNGC	2 cut(s)	61, 1115
BstDEI	CTNAG	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	5 cut(s)	737, 784, 796, 1045, 1087
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	3 cut(s)	618, 1129, 1151
BstMAI	GTCTC	2 cut(s)	956, 1175
BstMBI	GATC	3 cut(s)	615, 1126, 1148
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 640, 662
BstNI	CCWGG	1 cut(s)	1012
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	2 cut(s)	291, 1010
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	3 cut(s)	46, 294, 297
BstV2I	GAAGAC	2 cut(s)	470, 1145
BstX2I	RGATCY	1 cut(s)	1148
BstYI	RGATCY	1 cut(s)	1148
BsuRI	GGCC	2 cut(s)	804, 1063
BtsCI	GGATG	5 cut(s)	737, 784, 796, 1045, 1087
BtsIMutI	CAGTG	2 cut(s)	600, 1162
Cac8I	GCNNGC	2 cut(s)	61, 1115
CaiI	CAGNNNCTG	1 cut(s)	859
CfoI	GCGC	1 cut(s)	899
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	4 cut(s)	295, 356, 803, 1014
Csp6I	GTAC	6 cut(s)	103, 519, 610, 948, 957, 1174
CviAII	CATG	5 cut(s)	213, 554, 631, 681, 1177
CviQI	GTAC	6 cut(s)	103, 519, 610, 948, 957, 1174
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	617, 1128, 1150
DpnII	GATC	3 cut(s)	615, 1126, 1148
DraI	TTTAAA	1 cut(s)	426
EaeI	YGGCCR	1 cut(s)	1061
Ecl136II	GAGCTC	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	751
Eco47I	GGWCC	3 cut(s)	295, 356, 1014
Eco53kI	GAGCTC	1 cut(s)	749
Eco88I	CYCGRG	2 cut(s)	20, 1049
EcoICRI	GAGCTC	1 cut(s)	749
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	1010
EcoT38I	GRGCYC	1 cut(s)	751
FaeI	CATG	5 cut(s)	216, 557, 634, 684, 1180
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	5 cut(s)	212, 553, 630, 680, 1176
FauI	CCCGC	1 cut(s)	1100
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	6 cut(s)	29, 32, 35, 283, 286, 1064
FokI	GGATG	5 cut(s)	744, 791, 803, 1032, 1094
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	6 cut(s)	29, 32, 35, 283, 286, 1064
FspBI	CTAG	4 cut(s)	119, 522, 915, 1118
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	6 cut(s)	29, 32, 35, 283, 286, 1064
HaeIII	GGCC	2 cut(s)	804, 1063
HapII	CCGG	3 cut(s)	292, 406, 1130
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	5 cut(s)	216, 557, 634, 684, 1180
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	2 cut(s)	336, 374
HinfI	GANTC	3 cut(s)	593, 920, 1007
HpaII	CCGG	3 cut(s)	292, 406, 1130
HphI	GGTGA	3 cut(s)	265, 1185, 1192
Hpy166II	GTNNAC	2 cut(s)	328, 532
Hpy188I	TCNGA	2 cut(s)	855, 1148
Hpy188III	TCNNGA	6 cut(s)	22, 810, 887, 915, 1049, 1130
Hpy8I	GTNNAC	2 cut(s)	328, 532
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	982
HpyCH4III	ACNGT	5 cut(s)	392, 581, 952, 1043, 1157
HpyCH4IV	ACGT	5 cut(s)	82, 430, 498, 572, 699
HpyCH4V	TGCA	3 cut(s)	207, 462, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 640, 662
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	5 cut(s)	82, 430, 498, 572, 699
Hsp92II	CATG	5 cut(s)	216, 557, 634, 684, 1180
HspAI	GCGC	1 cut(s)	897
Kpn2I	TCCGGA	1 cut(s)	1129
Kzo9I	GATC	3 cut(s)	615, 1126, 1148
LmnI	GCTCC	1 cut(s)	746
Lsp1109I	GCAGC	3 cut(s)	46, 294, 297
LweI	GCATC	5 cut(s)	265, 300, 630, 722, 769
MaeI	CTAG	4 cut(s)	119, 522, 915, 1118
MaeII	ACGT	5 cut(s)	82, 430, 498, 572, 699
MaeIII	GTNAC	6 cut(s)	263, 271, 392, 867, 880, 1085
MalI	GATC	3 cut(s)	617, 1128, 1150
MboI	GATC	3 cut(s)	615, 1126, 1148
MboII	GAAGA	5 cut(s)	228, 358, 470, 1147, 1150
MflI	RGATCY	1 cut(s)	1148
MhlI	GDGCHC	2 cut(s)	751, 772
MluCI	AATT	8 cut(s)	232, 536, 666, 688, 705, 848, 968, 1070
MroI	TCCGGA	1 cut(s)	1129
MseI	TTAA	5 cut(s)	78, 378, 425, 485, 558
MspA1I	CMGCKG	3 cut(s)	37, 1066, 1206
MspI	CCGG	3 cut(s)	292, 406, 1130
MspR9I	CCNGG	2 cut(s)	293, 1012
MvaI	CCWGG	1 cut(s)	1012
MwoI	GCNNNNNNNGC	3 cut(s)	34, 640, 662
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	3 cut(s)	615, 1126, 1148
NlaIII	CATG	5 cut(s)	216, 557, 634, 684, 1180
NlaIV	GGNNCC	5 cut(s)	41, 51, 130, 296, 512
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	263, 271
NspI	RCATGY	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	593, 920, 1007
PfoI	TCCNGGA	1 cut(s)	1010
PkrI	GCNGC	6 cut(s)	30, 33, 36, 284, 287, 1065
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	751
Psp1406I	AACGTT	1 cut(s)	572
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	1010
PspGI	CCWGG	1 cut(s)	1010
PspN4I	GGNNCC	5 cut(s)	41, 51, 130, 296, 512
PspPI	GGNCC	4 cut(s)	295, 356, 803, 1014
PspPPI	RGGWCCY	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	859
PsuI	RGATCY	1 cut(s)	1148
PvuII	CAGCTG	1 cut(s)	1206
RsaI	GTAC	6 cut(s)	104, 520, 611, 949, 958, 1175
RsaNI	GTAC	6 cut(s)	103, 519, 610, 948, 957, 1174
SacI	GAGCTC	1 cut(s)	751
SaqAI	TTAA	5 cut(s)	78, 378, 425, 485, 558
SatI	GCNGC	6 cut(s)	29, 32, 35, 283, 286, 1064
Sau3AI	GATC	3 cut(s)	615, 1126, 1148
Sau96I	GGNCC	4 cut(s)	295, 356, 803, 1014
ScaI	AGTACT	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	293, 1012
SduI	GDGCHC	2 cut(s)	751, 772
SfaNI	GCATC	5 cut(s)	265, 300, 630, 722, 769
Sfr274I	CTCGAG	1 cut(s)	20
SgrAI	CRCCGGYG	1 cut(s)	405
SinI	GGWCC	3 cut(s)	295, 356, 1014
SlaI	CTCGAG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	20, 885
SmoI	CTYRAG	2 cut(s)	20, 885
Sse9I	AATT	8 cut(s)	232, 536, 666, 688, 705, 848, 968, 1070
SsiI	CCGC	6 cut(s)	28, 31, 37, 63, 1064, 1107
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	4 cut(s)	119, 522, 915, 1118
SstI	GAGCTC	1 cut(s)	751
StyD4I	CCNGG	2 cut(s)	291, 1010
TaaI	ACNGT	5 cut(s)	392, 581, 952, 1043, 1157
TaiI	ACGT	5 cut(s)	85, 433, 501, 575, 702
TaqI	TCGA	3 cut(s)	21, 638, 786
TasI	AATT	8 cut(s)	232, 536, 666, 688, 705, 848, 968, 1070
TatI	WGTACW	3 cut(s)	102, 518, 1173
TauI	GCSGC	3 cut(s)	31, 34, 1066
TfiI	GAWTC	3 cut(s)	593, 920, 1007
Tru1I	TTAA	5 cut(s)	78, 378, 425, 485, 558
Tru9I	TTAA	5 cut(s)	78, 378, 425, 485, 558
TscAI	CASTG	2 cut(s)	607, 1162
TseFI	GTSAC	2 cut(s)	263, 271
TseI	GCWGC	3 cut(s)	34, 282, 285
Tsp45I	GTSAC	2 cut(s)	263, 271
TspDTI	ATGAA	6 cut(s)	30, 214, 294, 698, 1001, 1023
TspGWI	ACGGA	3 cut(s)	313, 759, 944
TspRI	CASTG	2 cut(s)	607, 1162
VpaK11BI	GGWCC	3 cut(s)	295, 356, 1014
XagI	CCTNNNNNAGG	1 cut(s)	363
XapI	RAATTY	4 cut(s)	688, 705, 848, 1070
XbaI	TCTAGA	1 cut(s)	914
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1174
XhoI	CTCGAG	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	4 cut(s)	119, 522, 915, 1118
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.