Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016529

Physical Location & Seq

Genomic Coordinates Reverse (-)

22893815 .. 22895333

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCAATGCCATGGAACATGACTCTTTGGATGGCCGAGATGGTCTGGTTGGATCTCACCGGCTGGGTCTCCTCTTGCTTGACTGTCGCTGACGAGCTCGCCACCTCTCTCAGAACAGGAGATATCGGCCCTTTCGATAATTGTAAAGCAATAGGCATGCGAGGCTTATCCACCAAATTACAGTCCTTGTGTTGGAGCTCAACCTCTAAAACCCTTCATTTCCGATTCTCAAAATTTCATAAGATTGATAACACTGCGACGCTCGCTAAGCTATCTAAGCCCAACAAAGCCCACTTGAAACAACAACAAGAAGAATCCAGCTCTTTTGGATCGCTGTTCAGTGAAATAACTGAGATTTTAGGGGCTGAACATGTCACTCTGGATAAAACCCCATCTGGGTTTTTTATTTCCAAGGAAACCCATCTTGGGGTTGGTGAGGTTGGGGAAGAGAATGCTAAGGTGAATGCACTGGGAGAAAAGGAAGATATAGCTGTTGTGGAGGAAACCAGATTCGAAAGCGTAGCTGAAACTGATGTTAGCCCAGTAGTTTGTGAGGTTACGAAGATTGTCAGGGCGGAAAATGGTTTGGTTTCGATGGAGGAAACGGTTAGACGAGTTGGGTTTTCAATTAGATTCAGAGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

215

Amino Acids

23.83

Weight (kDa)

5.33

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57062 AT3G57062
prunus_persica	Prupe.7G043000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0476891 RchiOBHm_Chr3g0476991 RchiOBHm_Chr3g0477841
rosa_multiflora	Rmu_sc0000288.1_g000021 Rmu_sc0000288.1_g000032
rosa_roxburghii	Rroxscaffold_6G00403670 Rroxscaffold_6G00404410 Rroxscaffold_6G00404890
rosa_rugosa	Rorug03G0158100
rosa_samantha	Rh3BG241100 Rh3DG234400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	575
AclWI	GGATC	2 cut(s)	60, 337
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	233
AfiI	CCNNNNNNNGG	4 cut(s)	192, 396, 426, 427
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	298, 627
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	6 cut(s)	97, 198, 271, 321, 491, 524
AluI	AGCT	6 cut(s)	97, 198, 271, 321, 491, 524
Alw21I	GWGCWC	2 cut(s)	99, 200
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	60, 337
AoxI	GGCC	2 cut(s)	33, 127
ApoI	RAATTY	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	49, 446, 472
AsuII	TTCGAA	1 cut(s)	513
BanII	GRGCYC	2 cut(s)	99, 200
Bbv12I	GWGCWC	2 cut(s)	99, 200
BccI	CCATC	5 cut(s)	25, 34, 400, 429, 589
BcoDI	GTCTC	1 cut(s)	73
BlpI	GCTNAGC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	128
BmrI	ACTGGG	2 cut(s)	479, 536
BmuI	ACTGGG	2 cut(s)	479, 536
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	11, 411
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 396, 426, 427
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	474, 542
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	11, 411
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	4 cut(s)	192, 396, 426, 427
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	124, 342
BseNI	ACTGG	2 cut(s)	474, 542
BseRI	GAGGAG	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	35, 129
BsiHKAI	GWGCWC	2 cut(s)	99, 200
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	4 cut(s)	192, 396, 426, 427
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	2 cut(s)	457, 469
BsnI	GGCC	2 cut(s)	35, 129
Bso31I	GGTCTC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	513
Bsp1286I	GDGCHC	2 cut(s)	99, 200
Bsp143I	GATC	2 cut(s)	52, 329
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	2 cut(s)	35, 129
BspCNI	CTCAG	2 cut(s)	123, 343
BspPI	GGATC	2 cut(s)	60, 337
BspT104I	TTCGAA	1 cut(s)	513
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	474, 542
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	11, 411
BssMI	GATC	2 cut(s)	52, 329
BssT1I	CCWWGG	2 cut(s)	11, 411
Bst4CI	ACNGT	3 cut(s)	85, 183, 607
Bst6I	CTCTTC	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	99, 158, 264
BstDEI	CTNAG	5 cut(s)	110, 267, 276, 351, 456
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	2 cut(s)	55, 332
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	52, 329
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 263, 268, 277
BstNSI	RCATGY	2 cut(s)	160, 374
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	35, 129
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	252, 346, 467
Cac8I	GCNNGC	3 cut(s)	99, 158, 264
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	268
CviAII	CATG	4 cut(s)	12, 19, 157, 371
DdeI	CTNAG	5 cut(s)	110, 267, 276, 351, 456
DpnI	GATC	2 cut(s)	54, 331
DpnII	GATC	2 cut(s)	52, 329
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	1 cut(s)	590
Ecl136II	GAGCTC	2 cut(s)	97, 198
Eco130I	CCWWGG	2 cut(s)	11, 411
Eco24I	GRGCYC	2 cut(s)	99, 200
Eco31I	GGTCTC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	2 cut(s)	97, 198
EcoICRI	GAGCTC	2 cut(s)	97, 198
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	11, 411
EcoT38I	GRGCYC	2 cut(s)	99, 200
ErhI	CCWWGG	2 cut(s)	11, 411
FaeI	CATG	4 cut(s)	15, 22, 160, 374
FaiI	YATR	6 cut(s)	13, 20, 158, 240, 372, 488
FatI	CATG	4 cut(s)	11, 18, 156, 370
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	2 cut(s)	99, 200
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	35, 129
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	268
Hin1II	CATG	4 cut(s)	15, 22, 160, 374
HinfI	GANTC	5 cut(s)	22, 225, 314, 510, 633
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	49, 446, 472
Hpy188I	TCNGA	3 cut(s)	113, 224, 638
Hpy188III	TCNNGA	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	3 cut(s)	85, 183, 607
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 263, 268, 277
HpyF3I	CTNAG	5 cut(s)	110, 267, 276, 351, 456
Hsp92II	CATG	4 cut(s)	15, 22, 160, 374
Kzo9I	GATC	2 cut(s)	52, 329
LmnI	GCTCC	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	373, 556
MalI	GATC	2 cut(s)	54, 331
MboI	GATC	2 cut(s)	52, 329
MboII	GAAGA	4 cut(s)	323, 458, 494, 574
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	99, 200
MluCI	AATT	4 cut(s)	139, 176, 233, 627
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	30, 173
MnlI	CCTC	8 cut(s)	82, 115, 155, 214, 430, 493, 547, 592
MspI	CCGG	1 cut(s)	60
Mva1269I	GAATGC	2 cut(s)	457, 469
MwoI	GCNNNNNNNGC	4 cut(s)	162, 263, 268, 277
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	52, 329
NlaIII	CATG	4 cut(s)	15, 22, 160, 374
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	2 cut(s)	160, 374
NspV	TTCGAA	1 cut(s)	513
PaeI	GCATGC	1 cut(s)	160
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	2 cut(s)	457, 469
PfeI	GAWTC	4 cut(s)	225, 314, 510, 633
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	2 cut(s)	99, 200
PspFI	CCCAGC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	52
SacI	GAGCTC	2 cut(s)	99, 200
Sau3AI	GATC	2 cut(s)	52, 329
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	99, 200
SfuI	TTCGAA	1 cut(s)	513
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	4 cut(s)	139, 176, 233, 627
SsiI	CCGC	1 cut(s)	575
SstI	GAGCTC	2 cut(s)	99, 200
StyI	CCWWGG	2 cut(s)	11, 411
TaaI	ACNGT	3 cut(s)	85, 183, 607
TaqI	TCGA	3 cut(s)	135, 513, 593
TasI	AATT	4 cut(s)	139, 176, 233, 627
TfiI	GAWTC	4 cut(s)	225, 314, 510, 633
TscAI	CASTG	3 cut(s)	259, 346, 474
TseFI	GTSAC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	2 cut(s)	206, 227
TspRI	CASTG	3 cut(s)	259, 346, 474
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	160, 374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.