Rroxscaffold_6G00403670

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
26130304 .. 26130639
336 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00403670.1

Sequence Viewer

Length: 228 bp
ATGCGTAACCCAACAAAAACCCTCGCAAATTGGACTTTTGAGAGGAAAGGAAAGAGACCAAAGAGAAGAGTCAGAGAGAGAGAGAGAGATAGCAATGGCATGACTCTTTGGATGGCCGAGATGGTCTGGTTGGCTCTCACCGGCTGGATCCCCTCTTGCTTGACTGTTGCTGACGAGCTCGCCACCTCCCTCAGAACCGGAGATATCGGCCCTTTCAATGTCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.62

Weight (kDa)

10.38

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 142, 155
AcoI YGGCCR 1 cut(s) 114
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 2 cut(s) 142, 155
AoxI GGCC 2 cut(s) 114, 208
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 130
BamHI GGATCC 1 cut(s) 147
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 2 cut(s) 106, 115
BcoDI GTCTC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 100
BseGI GGATG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 205
BshFI GGCC 2 cut(s) 116, 210
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 141, 198
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 2 cut(s) 116, 210
Bso31I GGTCTC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 147
BspANI GGCC 2 cut(s) 116, 210
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 149
BspPI GGATC 2 cut(s) 142, 155
BspTNI GGTCTC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 2 cut(s) 116, 210
BtsCI GGATG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 209
CviAII CATG 1 cut(s) 100
CviJI RGCY 6 cut(s) 116, 134, 144, 178, 210, 225
CviKI_1 RGCY 6 cut(s) 116, 134, 144, 178, 210, 225
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoRV GATATC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FatI CATG 1 cut(s) 99
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 180
HaeIII GGCC 2 cut(s) 116, 210
HapII CCGG 2 cut(s) 141, 198
Hin1II CATG 1 cut(s) 103
HinfI GANTC 2 cut(s) 69, 103
HpaII CCGG 2 cut(s) 141, 198
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 74, 194
HpyCH4III ACNGT 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 4 cut(s) 112, 130, 154, 211
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 78
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 28
MlyI GAGTC 2 cut(s) 78, 97
MnlI CCTC 5 cut(s) 32, 36, 163, 196, 200
MspI CCGG 2 cut(s) 141, 198
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 142
PleI GAGTC 2 cut(s) 77, 97
PpsI GAGTC 2 cut(s) 77, 97
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 147
SacI GAGCTC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 2 cut(s) 78, 97
SduI GDGCHC 1 cut(s) 180
SetI ASST 2 cut(s) 180, 188
Sse9I AATT 1 cut(s) 28
SstI GAGCTC 1 cut(s) 180
TaaI ACNGT 1 cut(s) 166
TasI AATT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.