Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000288.1

Orthogroup ID

OG0016529

Physical Location & Seq

Genomic Coordinates Forward (+)

106897 .. 108945

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000288.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgtctaataggccgcctaggccacttagccagccgcccaaccctagcttgcccaacccctctgatttggcattactcgagtcggagagccgccgcccagtgcctaggctctgcctagaaaggaaagaggccgaagagcagatacagagagagagagagatggcaatgccatggaacatgactctttggatggccgagatggtctggttggctctcaccggctgggtctcctcttgcttgactgtcgctgacgagctcgccacctccctcagaaccggagatatcggccctttcaatgtcggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.4

Weight (kDa)

4.9

Isoelectric Point (pI)

76.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57062 AT3G57062
prunus_persica	Prupe.7G043000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0476891 RchiOBHm_Chr3g0476991 RchiOBHm_Chr3g0477841
rosa_multiflora	Rmu_sc0000288.1_g000021 Rmu_sc0000288.1_g000032
rosa_roxburghii	Rroxscaffold_6G00403670 Rroxscaffold_6G00404410 Rroxscaffold_6G00404890
rosa_rugosa	Rorug03G0158100
rosa_samantha	Rh3BG241100 Rh3DG234400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	14, 35, 91, 94
AcoI	YGGCCR	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	2 cut(s)	48, 256
AluI	AGCT	2 cut(s)	48, 256
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	5 cut(s)	11, 20, 129, 192, 286
AspA2I	CCTAGG	2 cut(s)	17, 104
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	77
AvrII	CCTAGG	2 cut(s)	17, 104
BanII	GRGCYC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	126, 158
Bbv12I	GWGCWC	1 cut(s)	258
BccI	CCATC	3 cut(s)	154, 184, 193
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	4 cut(s)	18, 45, 105, 116
BglI	GCCNNNNNGGC	1 cut(s)	19
BisI	GCNGC	4 cut(s)	14, 35, 91, 94
BlnI	CCTAGG	2 cut(s)	17, 104
BlsI	GCNGC	4 cut(s)	15, 36, 92, 95
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	287
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	3 cut(s)	17, 104, 170
BsaWI	WCCGGW	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	17, 104, 170
BseGI	GGATG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	5 cut(s)	13, 22, 131, 194, 288
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	219, 276
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	5 cut(s)	13, 22, 131, 194, 288
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	4 cut(s)	14, 35, 91, 94
BspANI	GGCC	5 cut(s)	13, 22, 131, 194, 288
BspCNI	CTCAG	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	17, 104, 170
BssT1I	CCWWGG	3 cut(s)	17, 104, 170
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	32, 50, 258
BstDEI	CTNAG	2 cut(s)	26, 269
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BsuRI	GGCC	5 cut(s)	13, 22, 131, 194, 288
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	32, 50, 258
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	287
CviAII	CATG	2 cut(s)	171, 178
DdeI	CTNAG	2 cut(s)	26, 269
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	3 cut(s)	17, 104, 170
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	3 cut(s)	17, 104, 170
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	3 cut(s)	17, 104, 170
FaeI	CATG	2 cut(s)	174, 181
FaiI	YATR	2 cut(s)	172, 179
FatI	CATG	2 cut(s)	170, 177
Fnu4HI	GCNGC	4 cut(s)	14, 35, 91, 94
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	14, 35, 91, 94
FspBI	CTAG	4 cut(s)	18, 45, 105, 116
GluI	GCNGC	4 cut(s)	14, 35, 91, 94
GsaI	CCCAGC	1 cut(s)	226
HaeIII	GGCC	5 cut(s)	13, 22, 131, 194, 288
HapII	CCGG	2 cut(s)	219, 276
Hin1II	CATG	2 cut(s)	174, 181
HinfI	GANTC	2 cut(s)	80, 181
HpaII	CCGG	2 cut(s)	219, 276
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	64, 85, 272
HpyCH4III	ACNGT	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	26, 269
Hsp92II	CATG	2 cut(s)	174, 181
LguI	GCTCTTC	1 cut(s)	129
LpnPI	CCDG	6 cut(s)	44, 111, 190, 208, 232, 289
MaeI	CTAG	4 cut(s)	18, 45, 105, 116
MboII	GAAGA	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	89, 175
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	5 cut(s)	70, 121, 241, 274, 278
MspI	CCGG	2 cut(s)	219, 276
MwoI	GCNNNNNNNGC	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	170
NlaIII	CATG	2 cut(s)	174, 181
NmeAIII	GCCGAG	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	15, 36, 92, 95
PleI	GAGTC	2 cut(s)	88, 175
PpsI	GAGTC	2 cut(s)	88, 175
Psp124BI	GAGCTC	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	287
PspXI	VCTCGAGB	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	129
SatI	GCNGC	4 cut(s)	14, 35, 91, 94
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	2 cut(s)	89, 175
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	3 cut(s)	50, 258, 266
SfiI	GGCCNNNNNGGCC	1 cut(s)	19
Sfr274I	CTCGAG	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SsiI	CCGC	4 cut(s)	14, 35, 91, 94
SspMI	CTAG	4 cut(s)	18, 45, 105, 116
SstI	GAGCTC	1 cut(s)	258
StyI	CCWWGG	3 cut(s)	17, 104, 170
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	78
TauI	GCSGC	4 cut(s)	16, 37, 93, 96
TscAI	CASTG	1 cut(s)	105
TspRI	CASTG	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	77
XmaJI	CCTAGG	2 cut(s)	17, 104
XspI	CTAG	4 cut(s)	18, 45, 105, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.