RchiOBHm_Chr3g0476891

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
22842764 .. 22843001
238 bp
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UTR
Exon/CDS
Intron
PRQ44227

Sequence Viewer

Length: 231 bp
ATGCGTAACCCAACAAGAACTCTCGCAAATTGGACTTTTGAGAAGAAAGGAAAGAGGCCGAAGAGCAGATACAGAGAGAGAGAGATGGCAATGCCATGGAACATGACTCTTTGGATGGCCGAGATGGTCTGGTTGGCTCTCACCGGCTGGGTCTCCTCTTGCTTGACTGTCGCTGACGAGCTCGCCACCTCCCTCAGAACCGGAGATATTGGCCCTTTCAATGTCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.79

Weight (kDa)

9.85

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 117
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 157
AoxI GGCC 3 cut(s) 56, 117, 211
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 133
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 3 cut(s) 79, 109, 118
BcoDI GTCTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 3 cut(s) 58, 119, 213
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 144, 201
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 3 cut(s) 58, 119, 213
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 95
BspANI GGCC 3 cut(s) 58, 119, 213
BspCNI CTCAG 1 cut(s) 207
BspQI GCTCTTC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 58, 119, 213
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 212
CviAII CATG 2 cut(s) 96, 103
CviJI RGCY 7 cut(s) 58, 119, 137, 147, 181, 213, 228
CviKI_1 RGCY 7 cut(s) 58, 119, 137, 147, 181, 213, 228
DdeI CTNAG 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 99, 106
FaiI YATR 2 cut(s) 97, 104
FatI CATG 2 cut(s) 95, 102
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 3 cut(s) 58, 119, 213
HapII CCGG 2 cut(s) 144, 201
Hin1II CATG 2 cut(s) 99, 106
HinfI GANTC 1 cut(s) 106
HpaII CCGG 2 cut(s) 144, 201
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 2 cut(s) 99, 106
LguI GCTCTTC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 115, 133, 157, 214
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 2 cut(s) 55, 73
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 4 cut(s) 48, 166, 199, 203
MspI CCGG 2 cut(s) 144, 201
NcoI CCATGG 1 cut(s) 95
NlaIII CATG 2 cut(s) 99, 106
NmeAIII GCCGAG 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 212
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 183
SetI ASST 2 cut(s) 183, 191
Sse9I AATT 1 cut(s) 28
SstI GAGCTC 1 cut(s) 183
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 169
TasI AATT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.