Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016529

Physical Location & Seq

Genomic Coordinates Reverse (-)

13032556 .. 13034569

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0158100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATTGGTTACAGTGCTCAGGGTGCCGGCAAGTACGGCCTCTACGAGTTCTTTAAGAAGTACTATGCAGATATTGCAGGACCTGAGTATGCAGCCAAGTACAAAACCTTGATCTATCTCGCAGGTTCTGCATCTGCTGAAGTGTTTGCTGATGTTGCCCTCTGTCCTATGGAAGCTGTCAAAGTTCGAGTCCAGACTCAGCCGGGGTTCGCCAGAGGTTTGTCAGATGGGCTACCAAAGTTTATCAAATCCGAAGGCGCTCTCGGGTTGTACAAAGGGATTGTTCCTCTTTGGGGACGCCAAATTCCTTATACAATGATGAAATTTGCAACCTTCGAGAAATTTGTCGAGCTCACTTACAAGCATGTGATCCCAACACCGAAAGAGCAGTGCAGCACACCCTTGCAGCTCGGAGTGAGCTTTGCGTGTGGATATGTGGCTGGTGTGTTCTGTGCTGTTGTTTCACACCCTGCTGATAACTTGGTGTCTTTCCTCAACAATGCCAAGGGGGCAACTGTTAGTGATGCTGTGAAGAACCTAGGAGTGTGGGGTCTTTTCACCCGGGGTCTTCCTCTTCGTATAGTCATGATCGGAACCCTTACCGGAAGCCAATGGGGTATCTATGATGCCTGCAAAGTTTTCATGGGCGTACCAACTACTGGTGGCGCCGCTCCTGCTGCCACTGAGCTTGCCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

233

Amino Acids

24.9

Weight (kDa)

8.98

Isoelectric Point (pI)

20.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 121	1.8e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57062 AT3G57062
prunus_persica	Prupe.7G043000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0476891 RchiOBHm_Chr3g0476991 RchiOBHm_Chr3g0477841
rosa_multiflora	Rmu_sc0000288.1_g000021 Rmu_sc0000288.1_g000032
rosa_roxburghii	Rroxscaffold_6G00403670 Rroxscaffold_6G00404410 Rroxscaffold_6G00404890
rosa_rugosa	Rorug03G0158100
rosa_samantha	Rh3BG241100 Rh3DG234400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccB1I	GGYRCC	2 cut(s)	23, 665
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	671
AciI	CCGC	1 cut(s)	669
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	3 cut(s)	303, 323, 341
AcuI	CTGAAG	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	298, 666
AfaI	GTAC	5 cut(s)	35, 62, 101, 272, 651
AfiI	CCNNNNNNNGG	2 cut(s)	293, 659
AluBI	AGCT	5 cut(s)	176, 352, 409, 420, 688
AluI	AGCT	5 cut(s)	176, 352, 409, 420, 688
Alw21I	GWGCWC	2 cut(s)	19, 354
AlwI	GGATC	1 cut(s)	364
AlwNI	CAGNNNCTG	2 cut(s)	83, 128
Ama87I	CYCGRG	2 cut(s)	263, 561
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	4 cut(s)	92, 393, 406, 677
ApoI	RAATTY	3 cut(s)	303, 323, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspA2I	CCTAGG	1 cut(s)	538
AspLEI	GCGC	2 cut(s)	260, 668
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	3 cut(s)	204, 562, 563
AsuHPI	GGTGA	1 cut(s)	550
AvaI	CYCGRG	2 cut(s)	263, 561
AvaII	GGWCC	1 cut(s)	80
AvrII	CCTAGG	1 cut(s)	538
BanI	GGYRCC	2 cut(s)	23, 665
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	2 cut(s)	19, 354
BbvI	GCAGC	4 cut(s)	104, 405, 418, 664
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	3 cut(s)	204, 562, 563
BfaI	CTAG	1 cut(s)	539
BfoI	RGCGCY	2 cut(s)	261, 669
BfuAI	ACCTGC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	509
BisI	GCNGC	5 cut(s)	93, 394, 407, 669, 678
BlnI	CCTAGG	1 cut(s)	538
BlsI	GCNGC	5 cut(s)	94, 395, 408, 670, 679
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	3 cut(s)	204, 562, 563
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	2 cut(s)	263, 561
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	25, 595, 667
BmrFI	CCNGG	3 cut(s)	204, 562, 563
BmsI	GCATC	3 cut(s)	140, 514, 616
BpiI	GAAGAC	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	18
BpuMI	CCSGG	3 cut(s)	204, 562, 563
BsaHI	GRCGYC	2 cut(s)	298, 666
BsaJI	CCNNGG	5 cut(s)	203, 504, 538, 561, 562
BsaWI	WCCGGW	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 659
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	664
BseDI	CCNNGG	5 cut(s)	203, 504, 538, 561, 562
BseLI	CCNNNNNNNGG	2 cut(s)	293, 659
BseMII	CTCAG	4 cut(s)	32, 75, 212, 675
BseNI	ACTGG	1 cut(s)	664
BseXI	GCAGC	4 cut(s)	104, 405, 418, 664
BsgI	GTGCAG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	2 cut(s)	23, 665
BsiHKAI	GWGCWC	2 cut(s)	19, 354
BsiHKCI	CYCGRG	2 cut(s)	263, 561
BsiSI	CCGG	4 cut(s)	27, 203, 562, 603
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	293, 659
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	2 cut(s)	263, 561
Bsp1286I	GDGCHC	2 cut(s)	19, 354
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	111, 369, 588
BspACI	CCGC	1 cut(s)	669
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	4 cut(s)	31, 76, 211, 676
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	3 cut(s)	25, 595, 667
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	364
BspT107I	GGYRCC	2 cut(s)	23, 665
BsrBI	CCGCTC	1 cut(s)	671
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	664
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	5 cut(s)	203, 504, 538, 561, 562
BssMI	GATC	3 cut(s)	111, 369, 588
BssNI	GRCGYC	2 cut(s)	298, 666
BssT1I	CCWWGG	2 cut(s)	504, 538
Bst4CI	ACNGT	2 cut(s)	14, 517
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	2 cut(s)	298, 666
BstAPI	GCANNNNNTGC	2 cut(s)	74, 128
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	28, 631, 690
BstDEI	CTNAG	4 cut(s)	18, 84, 198, 684
BstH2I	RGCGCY	2 cut(s)	261, 669
BstHHI	GCGC	2 cut(s)	260, 668
BstKTI	GATC	3 cut(s)	114, 372, 591
BstMBI	GATC	3 cut(s)	111, 369, 588
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 36, 74, 128, 155, 509, 674, 677
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	202, 560, 561
BstV1I	GCAGC	4 cut(s)	104, 405, 418, 664
BstV2I	GAAGAC	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	3 cut(s)	19, 395, 681
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	28, 631, 690
CaiI	CAGNNNCTG	2 cut(s)	83, 128
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	2 cut(s)	260, 668
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	80
Cfr9I	CCCGGG	1 cut(s)	561
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	5 cut(s)	34, 61, 100, 271, 650
CspCI	CAANNNNNGTGG	1 cut(s)	670
CviAII	CATG	3 cut(s)	365, 586, 643
CviQI	GTAC	5 cut(s)	34, 61, 100, 271, 650
DdeI	CTNAG	4 cut(s)	18, 84, 198, 684
DinI	GGCGCC	1 cut(s)	667
DpnI	GATC	3 cut(s)	113, 371, 590
DpnII	GATC	3 cut(s)	111, 369, 588
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	504, 538
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	159
Eco88I	CYCGRG	2 cut(s)	263, 561
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	80
EcoT14I	CCWWGG	2 cut(s)	504, 538
EcoT38I	GRGCYC	1 cut(s)	354
EgeI	GGCGCC	1 cut(s)	667
EheI	GGCGCC	1 cut(s)	667
ErhI	CCWWGG	2 cut(s)	504, 538
FaeI	CATG	3 cut(s)	368, 589, 646
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	3 cut(s)	364, 585, 642
Fnu4HI	GCNGC	5 cut(s)	93, 394, 407, 669, 678
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	5 cut(s)	93, 394, 407, 669, 678
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	2 cut(s)	259, 667
GluI	GCNGC	5 cut(s)	93, 394, 407, 669, 678
HaeII	RGCGCY	2 cut(s)	261, 669
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	4 cut(s)	27, 203, 562, 603
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	2 cut(s)	260, 668
Hin1I	GRCGYC	2 cut(s)	298, 666
Hin1II	CATG	3 cut(s)	368, 589, 646
Hin6I	GCGC	2 cut(s)	258, 666
HinP1I	GCGC	2 cut(s)	258, 666
HinfI	GANTC	2 cut(s)	189, 196
HpaII	CCGG	4 cut(s)	27, 203, 562, 603
HphI	GGTGA	1 cut(s)	550
Hpy188I	TCNGA	4 cut(s)	226, 253, 413, 593
Hpy188III	TCNNGA	3 cut(s)	193, 337, 586
HpyAV	CCTTC	2 cut(s)	248, 343
HpyCH4III	ACNGT	2 cut(s)	14, 517
HpyCH4V	TGCA	8 cut(s)	68, 77, 92, 131, 329, 393, 406, 633
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 36, 74, 128, 155, 509, 674, 677
HpyF3I	CTNAG	4 cut(s)	18, 84, 198, 684
Hsp92I	GRCGYC	2 cut(s)	298, 666
Hsp92II	CATG	3 cut(s)	368, 589, 646
HspAI	GCGC	2 cut(s)	258, 666
KasI	GGCGCC	1 cut(s)	665
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	111, 369, 588
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	4 cut(s)	104, 405, 418, 664
LweI	GCATC	3 cut(s)	140, 514, 616
MaeI	CTAG	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	113, 371, 590
MbiI	CCGCTC	1 cut(s)	671
MboI	GATC	3 cut(s)	111, 369, 588
MboII	GAAGA	3 cut(s)	544, 560, 566
MhlI	GDGCHC	2 cut(s)	19, 354
MluCI	AATT	3 cut(s)	303, 323, 341
Mly113I	GGCGCC	1 cut(s)	666
MlyI	GAGTC	2 cut(s)	190, 198
MnlI	CCTC	6 cut(s)	50, 170, 209, 297, 503, 582
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	1 cut(s)	54
MspI	CCGG	4 cut(s)	27, 203, 562, 603
MspR9I	CCNGG	3 cut(s)	204, 562, 563
MwoI	GCNNNNNNNGC	8 cut(s)	23, 36, 74, 128, 155, 509, 674, 677
NaeI	GCCGGC	1 cut(s)	28
NarI	GGCGCC	1 cut(s)	666
NciI	CCSGG	3 cut(s)	204, 562, 563
NdeII	GATC	3 cut(s)	111, 369, 588
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	368, 589, 646
NlaIV	GGNNCC	3 cut(s)	25, 595, 667
NspI	RCATGY	1 cut(s)	368
PagI	TCATGA	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	5 cut(s)	94, 395, 408, 670, 679
PleI	GAGTC	2 cut(s)	190, 197
PluTI	GGCGCC	1 cut(s)	669
PpsI	GAGTC	2 cut(s)	190, 197
PpuMI	RGGWCCY	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	80
PspN4I	GGNNCC	3 cut(s)	25, 595, 667
PspPI	GGNCC	1 cut(s)	80
PspPPI	RGGWCCY	1 cut(s)	80
PstNI	CAGNNNCTG	2 cut(s)	83, 128
RsaI	GTAC	5 cut(s)	35, 62, 101, 272, 651
RsaNI	GTAC	5 cut(s)	34, 61, 100, 271, 650
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	5 cut(s)	93, 394, 407, 669, 678
Sau3AI	GATC	3 cut(s)	111, 369, 588
Sau96I	GGNCC	1 cut(s)	80
ScaI	AGTACT	1 cut(s)	62
SchI	GAGTC	2 cut(s)	190, 198
ScrFI	CCNGG	3 cut(s)	204, 562, 563
SduI	GDGCHC	2 cut(s)	19, 354
SfaNI	GCATC	3 cut(s)	140, 514, 616
SfoI	GGCGCC	1 cut(s)	667
SinI	GGWCC	1 cut(s)	80
SmaI	CCCGGG	1 cut(s)	563
Sse9I	AATT	3 cut(s)	303, 323, 341
SsiI	CCGC	1 cut(s)	669
SspDI	GGCGCC	1 cut(s)	665
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	202, 560, 561
StyI	CCWWGG	2 cut(s)	504, 538
TaaI	ACNGT	2 cut(s)	14, 517
TaqI	TCGA	3 cut(s)	187, 336, 348
TasI	AATT	3 cut(s)	303, 323, 341
TatI	WGTACW	3 cut(s)	60, 99, 270
TauI	GCSGC	1 cut(s)	671
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	3 cut(s)	19, 395, 688
TseI	GCWGC	4 cut(s)	92, 393, 406, 677
TspDTI	ATGAA	2 cut(s)	335, 631
TspMI	CCCGGG	1 cut(s)	561
TspRI	CASTG	3 cut(s)	19, 395, 688
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	3 cut(s)	303, 323, 341
XceI	RCATGY	1 cut(s)	368
XmaI	CCCGGG	1 cut(s)	561
XmaJI	CCTAGG	1 cut(s)	538
XspI	CTAG	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.