Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000288.1

Orthogroup ID

OG0016529

Physical Location & Seq

Genomic Coordinates Forward (+)

68735 .. 69639

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000288.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgctaggcttatccaccaaattacagtccttctgtaggagcccaacctctaaaacccttcatttccgattctcaaaatttcataagattgataacactgcgacgctcgctaagctatctaagcccaataaagcccacttgaaacaacaacaagaagaatccagctcgtttggatcgctgttcagtgaaataactgagattttaggggctgaacatgtcactctggataaaaccccatctgggttttttatttccaaggaaacccatcttggggttggtgaggttggggaagagaatgctaaggtgaatgcactgggagaaaaggaagatatagctgttgtggaggaaaccagattcgaaagcgtagctgaaactgatgttagcccagtagtttgtgaggttacgaagattgtcagggcggaaaatgctggggatgcaagagagtttgggctggtggagaagttggtggggaactggtgcgagaaagatgttaagacccggaccattcttatccagatgtatgggaaggccaagttagttggaagagccttgttagtctatgagaaaatcaagaaatgcagttttgaaccacacacagtagttttcagaatgatgacacgtgcactttgtgctgctggaaaagccgacgtggcaatggaattttacaaggaaatggtacagaaggacattggacttgatatcactgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

236

Amino Acids

26.22

Weight (kDa)

7.01

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57062 AT3G57062
prunus_persica	Prupe.7G043000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0476891 RchiOBHm_Chr3g0476991 RchiOBHm_Chr3g0477841
rosa_multiflora	Rmu_sc0000288.1_g000021 Rmu_sc0000288.1_g000032
rosa_roxburghii	Rroxscaffold_6G00403670 Rroxscaffold_6G00404410 Rroxscaffold_6G00404890
rosa_rugosa	Rorug03G0158100
rosa_samantha	Rh3BG241100 Rh3DG234400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	77, 659
AcvI	CACGTG	1 cut(s)	620
AdeI	CACNNNGTG	1 cut(s)	629
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	4 cut(s)	36, 240, 270, 271
AflIII	ACRYGT	2 cut(s)	214, 617
AgsI	TTSAA	2 cut(s)	142, 587
AjiI	CACGTC	1 cut(s)	649
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	4 cut(s)	115, 165, 335, 368
AluI	AGCT	4 cut(s)	115, 165, 335, 368
Alw21I	GWGCWC	1 cut(s)	625
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	528
ApaLI	GTGCAC	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	2 cut(s)	77, 659
AspS9I	GGNCC	1 cut(s)	501
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	290, 316
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	244, 273
BcnI	CCSGG	1 cut(s)	499
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	650
BisI	GCNGC	1 cut(s)	633
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	1 cut(s)	499
Bme18I	GGWCC	1 cut(s)	501
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	499
BmrI	ACTGGG	2 cut(s)	323, 380
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	2 cut(s)	323, 380
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	499
BsaAI	YACGTR	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 240, 270, 271
Bse1I	ACTGG	3 cut(s)	318, 386, 479
Bse3DI	GCAATG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	4 cut(s)	36, 240, 270, 271
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	3 cut(s)	318, 386, 479
BseSI	GKGCMC	1 cut(s)	625
BseXI	GCAGC	1 cut(s)	619
BseYI	CCCAGC	1 cut(s)	428
BshFI	GGCC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	499
BslI	CCNNNNNNNGG	4 cut(s)	36, 240, 270, 271
BsmI	GAATGC	2 cut(s)	301, 313
BsnI	GGCC	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	44, 625
Bsp143I	GATC	1 cut(s)	173
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	538
BspT104I	TTCGAA	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	318, 386, 479
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	27, 598, 706
Bst6I	CTCTTC	2 cut(s)	285, 538
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	620
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	4 cut(s)	111, 120, 195, 300
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	8 cut(s)	107, 112, 121, 425, 434, 629, 641, 650
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	497
BstSFI	CTRYAG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	530
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	4 cut(s)	96, 190, 311, 702
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	501
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	1 cut(s)	215
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	4 cut(s)	111, 120, 195, 300
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
DraIII	CACNNNGTG	1 cut(s)	629
Eam1104I	CTCTTC	2 cut(s)	285, 538
EarI	CTCTTC	2 cut(s)	285, 538
EciI	GGCGGA	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	501
Eco72I	CACGTG	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	218
FaiI	YATR	6 cut(s)	84, 216, 332, 522, 561, 709
FatI	CATG	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	1 cut(s)	633
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	499
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	218
HinfI	GANTC	3 cut(s)	69, 158, 354
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	2 cut(s)	290, 316
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	2 cut(s)	68, 608
Hpy188III	TCNNGA	3 cut(s)	224, 514, 571
Hpy8I	GTNNAC	1 cut(s)	623
Hpy99I	CGWCG	2 cut(s)	106, 650
HpyAV	CCTTC	4 cut(s)	40, 68, 520, 676
HpyCH4III	ACNGT	3 cut(s)	27, 598, 706
HpyCH4IV	ACGT	2 cut(s)	619, 648
HpyCH4V	TGCA	4 cut(s)	311, 437, 579, 623
HpyF10VI	GCNNNNNNNGC	8 cut(s)	107, 112, 121, 425, 434, 629, 641, 650
HpyF3I	CTNAG	4 cut(s)	111, 120, 195, 300
HpySE526I	ACGT	2 cut(s)	619, 648
Hsp92II	CATG	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	173
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	2 cut(s)	619, 648
MaeIII	GTNAC	2 cut(s)	217, 400
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	5 cut(s)	167, 302, 338, 418, 555
MhlI	GDGCHC	2 cut(s)	44, 625
MluCI	AATT	3 cut(s)	20, 77, 659
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	4 cut(s)	58, 274, 337, 391
MseI	TTAA	1 cut(s)	492
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	1 cut(s)	499
Mva1269I	GAATGC	2 cut(s)	301, 313
MwoI	GCNNNNNNNGC	8 cut(s)	107, 112, 121, 425, 434, 629, 641, 650
NciI	CCSGG	1 cut(s)	499
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	357
PciI	ACATGT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	538
PctI	GAATGC	2 cut(s)	301, 313
PfeI	GAWTC	3 cut(s)	69, 158, 354
PkrI	GCNGC	1 cut(s)	634
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
Ppu21I	YACGTR	1 cut(s)	620
PscI	ACATGT	1 cut(s)	214
PspCI	CACGTG	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	501
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	501
ScrFI	CCNGG	1 cut(s)	499
SduI	GDGCHC	2 cut(s)	44, 625
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	1 cut(s)	501
Sse9I	AATT	3 cut(s)	20, 77, 659
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	497
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	27, 598, 706
TaiI	ACGT	2 cut(s)	622, 651
TaqI	TCGA	1 cut(s)	357
TasI	AATT	3 cut(s)	20, 77, 659
TfiI	GAWTC	3 cut(s)	69, 158, 354
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	4 cut(s)	103, 190, 318, 709
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	50, 71
TspRI	CASTG	4 cut(s)	103, 190, 318, 709
VneI	GTGCAC	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	501
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	77, 659
XceI	RCATGY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.