Rroxscaffold_6G00404410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016529
Physical Location & Seq
Forward (+)
26931270 .. 26932276
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404410.1

Sequence Viewer

Length: 471 bp
ATGCCATGGAACATGACTCTTTGGATGGCCGAGATGGTCTGGTTGGCTCTCACCGGCTGGATCCCCTCTTGCTTGACTGTTGCTGACGAGCTCGCCACCTCCCTCAGAACCGGAGATATCGGCCCTTTCAATGTTGGGGAAGAGAATGCTAAGGTGAATGCACTGGGAGAAAAGGATGATATAGCTGTTGTGGACGAAACCAGATTCGAAAGCGTAGCTGAAACTGATGTTAGCCCAGTAGCTCGTGAGGTTACGAAGACTGTCAGGGCGGAAAATGGTTTGGTTTCGATGGAGGAAACGGTTAGACGAGTTGGCTGCCTAGCTGGGGAGGCAAGAGAGTTTGGGCTGGTGGAGAAGTTGGTGGGGAAGATGGAAAGGAGCTCGTGCGAGAAAGATGTTAAAGACCTGGACCACTCTTATCCAGATGTATGGGAAGGCCAAGTTAGTTGGAAGAGCCTTGTTACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.27

Weight (kDa)

4.51

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AclWI GGATC 2 cut(s) 55, 68
AcoI YGGCCR 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 6 cut(s) 91, 185, 218, 242, 323, 381
AluI AGCT 6 cut(s) 91, 185, 218, 242, 323, 381
Alw21I GWGCWC 2 cut(s) 93, 383
AlwI GGATC 2 cut(s) 55, 68
AoxI GGCC 3 cut(s) 27, 121, 436
ApeKI GCWGC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 122, 409
AsuHPI GGTGA 2 cut(s) 43, 166
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 409
BamHI GGATCC 1 cut(s) 60
BanII GRGCYC 2 cut(s) 93, 383
BauI CACGAG 2 cut(s) 243, 382
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 93, 383
BbvI GCAGC 1 cut(s) 302
BccI CCATC 4 cut(s) 19, 28, 283, 364
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciT130I CCWGG 1 cut(s) 407
BfaI CTAG 1 cut(s) 320
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 122, 409
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 407
BmrI ACTGGG 2 cut(s) 173, 230
BmuI ACTGGG 2 cut(s) 173, 230
BpiI GAAGAC 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 168, 236
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 2 cut(s) 30, 181
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 2 cut(s) 168, 236
BseXI GCAGC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 3 cut(s) 29, 123, 438
BsiHKAI GWGCWC 2 cut(s) 93, 383
BsiSI CCGG 2 cut(s) 54, 111
BslI CCNNNNNNNGG 1 cut(s) 325
BsmI GAATGC 2 cut(s) 151, 163
BsnI GGCC 3 cut(s) 29, 123, 438
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 93, 383
Bsp143I GATC 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 1 cut(s) 269
BspANI GGCC 3 cut(s) 29, 123, 438
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 2 cut(s) 55, 68
BspQI GCTCTTC 1 cut(s) 446
BspT104I TTCGAA 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 2 cut(s) 168, 236
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 60
BssSI CACGAG 2 cut(s) 243, 382
BssT1I CCWWGG 1 cut(s) 5
Bst2BI CACGAG 2 cut(s) 243, 382
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 3 cut(s) 79, 262, 301
Bst6I CTCTTC 2 cut(s) 135, 446
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 104, 150
BstDSI CCRYGG 1 cut(s) 5
BstF5I GGATG 2 cut(s) 30, 181
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 429
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 3 cut(s) 29, 123, 438
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 2 cut(s) 30, 181
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 122, 409
CviAII CATG 2 cut(s) 6, 13
DdeI CTNAG 2 cut(s) 104, 150
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 135, 446
EarI CTCTTC 2 cut(s) 135, 446
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 2 cut(s) 91, 381
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 2 cut(s) 93, 383
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 2 cut(s) 91, 381
EcoICRI GAGCTC 2 cut(s) 91, 381
EcoRII CCWGG 1 cut(s) 405
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 5
EcoT38I GRGCYC 2 cut(s) 93, 383
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 9, 16
FaiI YATR 4 cut(s) 7, 14, 182, 430
FatI CATG 2 cut(s) 5, 12
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 2 cut(s) 37, 188
FriOI GRGCYC 2 cut(s) 93, 383
Fsp4HI GCNGC 1 cut(s) 316
FspBI CTAG 1 cut(s) 320
GluI GCNGC 1 cut(s) 316
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 3 cut(s) 29, 123, 438
HapII CCGG 2 cut(s) 54, 111
Hin1II CATG 2 cut(s) 9, 16
HinfI GANTC 2 cut(s) 16, 204
HpaII CCGG 2 cut(s) 54, 111
HphI GGTGA 2 cut(s) 43, 166
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 245, 422
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 428
HpyCH4III ACNGT 3 cut(s) 79, 262, 301
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 104, 150
Hsp92II CATG 2 cut(s) 9, 16
Kzo9I GATC 1 cut(s) 60
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 378
Lsp1109I GCAGC 1 cut(s) 302
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 250, 460
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 4 cut(s) 152, 268, 379, 463
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 2 cut(s) 93, 383
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 6 cut(s) 76, 109, 113, 241, 286, 322
MseI TTAA 1 cut(s) 399
MspI CCGG 2 cut(s) 54, 111
MspR9I CCNGG 1 cut(s) 407
Mva1269I GAATGC 2 cut(s) 151, 163
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 329
NcoI CCATGG 1 cut(s) 5
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 9, 16
NlaIV GGNNCC 1 cut(s) 62
NmeAIII GCCGAG 1 cut(s) 55
NspV TTCGAA 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 446
PctI GAATGC 2 cut(s) 151, 163
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 1 cut(s) 317
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
Psp124BI GAGCTC 2 cut(s) 93, 383
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 122, 409
PsuI RGATCY 1 cut(s) 60
SacI GAGCTC 2 cut(s) 93, 383
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 122, 409
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 2 cut(s) 93, 383
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 409
SsiI CCGC 1 cut(s) 269
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 2 cut(s) 93, 383
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 3 cut(s) 79, 262, 301
TaqI TCGA 2 cut(s) 207, 287
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 315
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 409
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.