Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017794

Physical Location & Seq

Genomic Coordinates Forward (+)

24146313 .. 24147546

Gene Structure 1234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGACGTGCTTCCAAGCTTGGAGGAACAAAGACTGTACATTTTGGAACTTGCTGATATTCTCGTGGAGAGACCATCACAATATGCAAAGGAGAGTGGAAGAAATATTTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGCCCCCATCAGGCTAGGGTAACACTAATTCACATTTTAGAACTTCAGATAAAACGACGTAAACAAGTTGTTGAGGATATAAAGAGGTATGTTCTCAACAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

84

Amino Acids

10.53

Weight (kDa)

10.13

Isoelectric Point (pI)

66.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	13 - 79	1.3e-16	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478121 RchiOBHm_Chr3g0478211 RchiOBHm_Chr3g0478341
rosa_laevigata	RLG00000023659
rosa_samantha	Rh1DG090400 Rh3AG216600 Rh3AG218100 Rh3AG218700 Rh3CG246700 Rh3CG247200
rosa_wichuraiana	Rw0G006940 Rw0G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	6
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	61
BccI	CCATC	2 cut(s)	81, 162
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	35
BssSI	CACGAG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	36
CviJI	RGCY	2 cut(s)	17, 161
CviKI_1	RGCY	2 cut(s)	17, 161
CviQI	GTAC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	176
FaiI	YATR	4 cut(s)	83, 113, 227, 237
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	138, 195
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	2 cut(s)	5, 205
HpyCH4V	TGCA	2 cut(s)	85, 127
HpySE526I	ACGT	2 cut(s)	5, 205
HspAI	GCGC	1 cut(s)	148
LpnPI	CCDG	1 cut(s)	143
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	5, 205
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	110, 125
MluCI	AATT	2 cut(s)	174, 247
MnlI	CCTC	3 cut(s)	15, 214, 225
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	253
SetI	ASST	4 cut(s)	8, 19, 208, 236
SfaNI	GCATC	1 cut(s)	136
Sse9I	AATT	2 cut(s)	174, 247
SspI	AATATT	1 cut(s)	105
SspMI	CTAG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	2 cut(s)	8, 208
TasI	AATT	2 cut(s)	174, 247
TatI	WGTACW	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.