Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017794

Physical Location & Seq

Genomic Coordinates Reverse (-)

21939240 .. 21939880

Gene Structure 641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG216600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCAGAGGAGAGTGGAAGAAATATTTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGCCCCCATCAGGCTAGGGTATCACTAATTCACATTTTAGAACTTCAGATAAAACGACGTAAACAAGTTGTTGAGGATATAAAGGGGAGGAGAGAAAAAGCACAGGCACTTCTGAAGCAGTCCCTCGAATCATTTGAGGACACCGGTGCATCTCTTATGTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

77

Amino Acids

9.13

Weight (kDa)

10.35

Isoelectric Point (pI)

67.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	2 - 60	3.3e-16	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478121 RchiOBHm_Chr3g0478211 RchiOBHm_Chr3g0478341
rosa_laevigata	RLG00000023659
rosa_samantha	Rh1DG090400 Rh3AG216600 Rh3AG218100 Rh3AG218700 Rh3CG246700 Rh3CG247200
rosa_wichuraiana	Rw0G006940 Rw0G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	95, 200
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	37, 229
AsiGI	ACCGGT	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	55, 224
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	22, 169
BshTI	ACCGGT	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	209
CspAI	ACCGGT	1 cut(s)	209
CviJI	RGCY	1 cut(s)	80
CviKI_1	RGCY	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	95, 200
FaiI	YATR	3 cut(s)	32, 146, 224
FaqI	GGGAC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	68
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	57, 114, 180
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	126
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	4, 46, 215
HpySE526I	ACGT	1 cut(s)	124
HspAI	GCGC	1 cut(s)	67
LpnPI	CCDG	3 cut(s)	62, 155, 223
LweI	GCATC	2 cut(s)	55, 224
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	124
MboII	GAAGA	2 cut(s)	29, 44
MluCI	AATT	1 cut(s)	93
MnlI	CCTC	4 cut(s)	133, 147, 196, 200
MroXI	GAANNNNTTC	1 cut(s)	24
MspI	CCGG	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	209
SetI	ASST	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	55, 224
SgeI	CNNG	8 cut(s)	49, 55, 89, 93, 143, 182, 203, 222
SgrAI	CRCCGGYG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	93
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.