Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017794

Physical Location & Seq

Genomic Coordinates Reverse (-)

22166204 .. 22167723

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG218100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAACAAAGAACAGAACAGACGGATGACATGCTTCCAAGCTTGGAAGAACTGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGAGATCTTCACTATATGCAAGGAGGGTGGAAGAAATTTCTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGGCCCCATCAGGCAAGGGCAACACTAATTCACATTCTAGAACTTCAGATAAAACGATGTAAACAAGCTGTTGAGGATATAAAGAGGTATGCTTTCAACAATTACTTACAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

94

Amino Acids

11.33

Weight (kDa)

9.89

Isoelectric Point (pI)

79.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	34 - 85	5.8e-17	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478121 RchiOBHm_Chr3g0478211 RchiOBHm_Chr3g0478341
rosa_laevigata	RLG00000023659
rosa_samantha	Rh1DG090400 Rh3AG216600 Rh3AG218100 Rh3AG218700 Rh3CG246700 Rh3CG247200
rosa_wichuraiana	Rw0G006940 Rw0G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	139, 265
AluBI	AGCT	3 cut(s)	41, 236, 281
AluI	AGCT	3 cut(s)	41, 236, 281
AoxI	GGCC	2 cut(s)	78, 170
ApoI	RAATTY	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	79, 171
BccI	CCATC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	206
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	79, 171
BmiI	GGNNCC	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	80, 172
BsnI	GGCC	2 cut(s)	80, 172
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	80, 172
BspLI	GGNNCC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	80, 172
BtsCI	GGATG	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	79, 171
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	69
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	5 cut(s)	41, 80, 172, 236, 281
CviKI_1	RGCY	5 cut(s)	41, 80, 172, 236, 281
CviQI	GTAC	1 cut(s)	69
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	197
FaeI	CATG	1 cut(s)	33
FaiI	YATR	6 cut(s)	31, 103, 105, 134, 248, 258
FatI	CATG	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	80, 172
HgaI	GACGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	2 cut(s)	39, 279
Hpy166II	GTNNAC	2 cut(s)	64, 230
Hpy188I	TCNGA	2 cut(s)	159, 216
Hpy188III	TCNNGA	2 cut(s)	139, 206
Hpy8I	GTNNAC	2 cut(s)	64, 230
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	107, 148
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	37, 164
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	206
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	4 cut(s)	58, 87, 131, 146
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	3 cut(s)	123, 195, 268
MnlI	CCTC	3 cut(s)	105, 235, 246
MseI	TTAA	1 cut(s)	283
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	2 cut(s)	79, 171
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	283
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	2 cut(s)	79, 171
SetI	ASST	4 cut(s)	43, 238, 257, 283
SfaNI	GCATC	1 cut(s)	157
Sse9I	AATT	3 cut(s)	123, 195, 268
SsiI	CCGC	1 cut(s)	169
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	68
TasI	AATT	3 cut(s)	123, 195, 268
TauI	GCSGC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	37
XapI	RAATTY	1 cut(s)	123
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.