Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017794

Physical Location & Seq

Genomic Coordinates Forward (+)

24027445 .. 24028917

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCATTTGAAGTTGCACCTTGGAGGAACAAAGAGTGAGTTAACTGTACCCAAAAGGCCCAAATATTGCTGCACATTTTGGAACTTGCTGATATTCTCGTGGAGAGACCATCACAATATGCAGAGGAGAGTGGAAGAAATATTTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGCCCCCATCAGGCTAGGGTAACACTAATTCACATTTTAGAACTTCAGATAAAACGACGTAAACAAGTTGTTGAGGATATAAAGAGGTATGTTCTCAACAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

96

Amino Acids

11.76

Weight (kDa)

10.24

Isoelectric Point (pI)

69.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	24 - 91	6.6e-17	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478121 RchiOBHm_Chr3g0478211 RchiOBHm_Chr3g0478341
rosa_laevigata	RLG00000023659
rosa_samantha	Rh1DG090400 Rh3AG216600 Rh3AG218100 Rh3AG218700 Rh3CG246700 Rh3CG247200
rosa_wichuraiana	Rw0G006940 Rw0G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	10, 154
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	117, 198
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	57
BmsI	GCATC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	19
BssSI	CACGAG	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	47
CviJI	RGCY	2 cut(s)	58, 197
CviKI_1	RGCY	2 cut(s)	58, 197
CviQI	GTAC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	19
FaiI	YATR	4 cut(s)	119, 149, 263, 273
Fnu4HI	GCNGC	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HpaI	GTTAAC	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	42, 245
Hpy188I	TCNGA	2 cut(s)	174, 231
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	42, 245
Hpy99I	CGWCG	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	4, 16, 72, 121, 163
HpySE526I	ACGT	1 cut(s)	241
HspAI	GCGC	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	42
LpnPI	CCDG	1 cut(s)	179
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	146, 161
MluCI	AATT	2 cut(s)	210, 283
MnlI	CCTC	4 cut(s)	17, 117, 250, 261
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	57
SetI	ASST	3 cut(s)	21, 244, 272
SfaNI	GCATC	1 cut(s)	172
SgeI	CNNG	9 cut(s)	32, 97, 109, 111, 166, 172, 206, 210, 260
Sse9I	AATT	2 cut(s)	210, 283
SspI	AATATT	2 cut(s)	65, 141
SspMI	CTAG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	244
TasI	AATT	2 cut(s)	210, 283
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TseI	GCWGC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.