Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0017794

Physical Location & Seq

Genomic Coordinates Forward (+)

23838502 .. 23854999

Gene Structure 16498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG247200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGGGATTTGGGTCTACGGTTTGGATCAAGAAGCAACGATATTGAGTTTTTGGGGCAGAAAAGGGGAGTGGGGAGATCAGCTGACCCTACAGGCAGCTGCGGACCGAAGGCGATGCCAACTTCTACTGAAACTGCAACTTGCTCAAGAGCCCAAAAACAATGGAACGCCGTAGGCCCAAAAGGCCCGTCGTTGTTTGGGAACATGACCGATGACGTGCTTCCAAGCTTGGAGGAACAAAGAGCTAGGGTATCACTAATTCACATTTTAGAACTTCAGATAAAACGACGTAAACAAGTTGTTGAGGATATAAAGGGATATAACATTGACATCAAATGGAGTCCACCTTGTGCTAGCATGGTGACTTGGTCTTGTCCATTGTACAATGAATGCAACATTGTAACACAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

137

Amino Acids

15.18

Weight (kDa)

8.91

Isoelectric Point (pI)

66.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478121 RchiOBHm_Chr3g0478211 RchiOBHm_Chr3g0478341
rosa_laevigata	RLG00000023659
rosa_samantha	Rh1DG090400 Rh3AG216600 Rh3AG218100 Rh3AG218700 Rh3CG246700 Rh3CG247200
rosa_wichuraiana	Rw0G006940 Rw0G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	383
AjiI	CACGTC	1 cut(s)	217
AluBI	AGCT	4 cut(s)	83, 99, 228, 245
AluI	AGCT	4 cut(s)	83, 99, 228, 245
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	175, 184
ApeKI	GCWGC	2 cut(s)	96, 99
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspS9I	GGNCC	3 cut(s)	104, 176, 185
AsuHPI	GGTGA	1 cut(s)	373
AsuNHI	GCTAGC	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	86, 108
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BfaI	CTAG	3 cut(s)	246, 354, 412
BfmI	CTRYAG	1 cut(s)	90
BglI	GCCNNNNNGGC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	97, 100
BlsI	GCNGC	2 cut(s)	98, 101
Bme18I	GGWCC	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	3 cut(s)	104, 176, 185
BmsI	GCATC	1 cut(s)	105
BmtI	GCTAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	86, 108
BshFI	GGCC	2 cut(s)	177, 186
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	177, 186
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	26, 77
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	177, 186
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	381
BssMI	GATC	2 cut(s)	26, 77
Bst4CI	ACNGT	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	29, 80
BstMBI	GATC	2 cut(s)	26, 77
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	86, 108
BsuRI	GGCC	2 cut(s)	177, 186
BtgZI	GCGATG	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	104, 176, 185
CpoI	CGGWCCG	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	382
CspI	CGGWCCG	1 cut(s)	104
CviAII	CATG	2 cut(s)	205, 358
CviJI	RGCY	7 cut(s)	83, 99, 152, 177, 186, 228, 245
CviKI_1	RGCY	7 cut(s)	83, 99, 152, 177, 186, 228, 245
CviQI	GTAC	1 cut(s)	382
DpnI	GATC	2 cut(s)	28, 79
DpnII	GATC	2 cut(s)	26, 77
DraIII	CACNNNGTG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	2 cut(s)	208, 361
FaiI	YATR	4 cut(s)	206, 311, 321, 359
FatI	CATG	2 cut(s)	204, 357
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	97, 100
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	97, 100
FspBI	CTAG	3 cut(s)	246, 354, 412
GluI	GCNGC	2 cut(s)	97, 100
HaeIII	GGCC	2 cut(s)	177, 186
Hin1II	CATG	2 cut(s)	208, 361
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	1 cut(s)	340
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	3 cut(s)	17, 293, 344
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	2 cut(s)	30, 147
Hpy8I	GTNNAC	3 cut(s)	17, 293, 344
Hpy99I	CGWCG	2 cut(s)	193, 291
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	2 cut(s)	216, 289
HpyCH4V	TGCA	2 cut(s)	137, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	216, 289
Hsp92II	CATG	2 cut(s)	208, 361
Kzo9I	GATC	2 cut(s)	26, 77
LpnPI	CCDG	1 cut(s)	78
Lsp1109I	GCAGC	2 cut(s)	86, 108
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	3 cut(s)	246, 354, 412
MaeII	ACGT	2 cut(s)	216, 289
MaeIII	GTNAC	2 cut(s)	361, 400
MalI	GATC	2 cut(s)	28, 79
MboI	GATC	2 cut(s)	26, 77
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	2 cut(s)	226, 298
MspA1I	CMGCKG	2 cut(s)	83, 99
Mva1269I	GAATGC	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	183
NdeII	GATC	2 cut(s)	26, 77
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	2 cut(s)	208, 361
NmuCI	GTSAC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	395
PflFI	GACNNNGTC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	98, 101
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspPI	GGNCC	3 cut(s)	104, 176, 185
PsyI	GACNNNGTC	1 cut(s)	367
PvuII	CAGCTG	2 cut(s)	83, 99
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
Rsr2I	CGGWCCG	1 cut(s)	104
RsrII	CGGWCCG	1 cut(s)	104
SatI	GCNGC	2 cut(s)	97, 100
Sau3AI	GATC	2 cut(s)	26, 77
Sau96I	GGNCC	3 cut(s)	104, 176, 185
SchI	GAGTC	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	8 cut(s)	85, 101, 219, 230, 247, 292, 349, 413
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	90
SfiI	GGCCNNNNNGGCC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	3 cut(s)	246, 354, 412
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	2 cut(s)	219, 292
TaqII	GACCGA	2 cut(s)	121, 224
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	96, 99
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	402
Tth111I	GACNNNGTC	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	3 cut(s)	246, 354, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.