Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00258

Orthogroup ID

OG0017794

Physical Location & Seq

Genomic Coordinates Reverse (-)

94 .. 1731

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ACCGATGACGTGCTTCCAAGCTTGGAGGAACAAAGAGTGAATTTTAGGATCCGAACAGAGAATTGCAGCTGCACATTTTGGAACTTGCTGATATTCTCGTGGAGAGACCATCACAATATGCAGAGGAGAGTGGAAGAAATATTTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGCCCCCATCAGGCTAGGGTATCACTAATTCACATTTTAGAACTTCAGATAAAACGACGTAAACAAGTTGTTGAGGATATAAAGGGATATGCACTTCTGAAGCAGTCCCTTGAATCATTTGAGGACACCGGTGCATCTCTTATGTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

111

Amino Acids

13.3

Weight (kDa)

8.71

Isoelectric Point (pI)

64.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	24 - 89	6.2e-16	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478121 RchiOBHm_Chr3g0478211 RchiOBHm_Chr3g0478341
rosa_laevigata	RLG00000023659
rosa_samantha	Rh1DG090400 Rh3AG216600 Rh3AG218100 Rh3AG218700 Rh3CG246700 Rh3CG247200
rosa_wichuraiana	Rw0G006940 Rw0G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	43, 56
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	212, 302
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgeI	ACCGGT	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	154, 296, 331
AjiI	CACGTC	1 cut(s)	10
AluBI	AGCT	2 cut(s)	21, 69
AluI	AGCT	2 cut(s)	21, 69
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	43, 56
ApeKI	GCWGC	2 cut(s)	66, 69
ApoI	RAATTY	1 cut(s)	40
AsiGI	ACCGGT	1 cut(s)	311
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	56, 78
BccI	CCATC	2 cut(s)	117, 198
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	2 cut(s)	67, 70
BlsI	GCNGC	2 cut(s)	68, 71
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	50
BmsI	GCATC	2 cut(s)	172, 326
BsaI	GGTCTC	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	56, 78
BsgI	GTGCAG	1 cut(s)	55
BshTI	ACCGGT	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	43, 56
BspTNI	GGTCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssMI	GATC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	97
Bst2BI	CACGAG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	56, 78
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	311
CspAI	ACCGGT	1 cut(s)	311
CviJI	RGCY	3 cut(s)	21, 69, 197
CviKI_1	RGCY	3 cut(s)	21, 69, 197
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	212, 302
FaiI	YATR	5 cut(s)	119, 149, 263, 273, 326
FaqI	GGGAC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	67, 70
Fsp4HI	GCNGC	2 cut(s)	67, 70
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	2 cut(s)	67, 70
HapII	CCGG	1 cut(s)	312
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	4 cut(s)	53, 174, 231, 282
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	243
HpyCH4IV	ACGT	2 cut(s)	9, 241
HpyCH4V	TGCA	6 cut(s)	66, 72, 121, 163, 275, 317
HpySE526I	ACGT	2 cut(s)	9, 241
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	48
LpnPI	CCDG	2 cut(s)	179, 325
Lsp1109I	GCAGC	2 cut(s)	56, 78
LweI	GCATC	2 cut(s)	172, 326
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	9, 241
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	146, 161
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	3 cut(s)	40, 61, 210
MnlI	CCTC	4 cut(s)	19, 117, 250, 298
MroXI	GAANNNNTTC	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	69
MspI	CCGG	1 cut(s)	312
NdeII	GATC	1 cut(s)	48
NlaIV	GGNNCC	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	296
PinAI	ACCGGT	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	68, 71
PspN4I	GGNNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	69
SatI	GCNGC	2 cut(s)	67, 70
Sau3AI	GATC	1 cut(s)	48
SetI	ASST	4 cut(s)	12, 23, 71, 244
SfaNI	GCATC	2 cut(s)	172, 326
SgrAI	CRCCGGYG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	40, 61, 210
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	1 cut(s)	198
TaiI	ACGT	2 cut(s)	12, 244
TasI	AATT	3 cut(s)	40, 61, 210
TfiI	GAWTC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	66, 69
XapI	RAATTY	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.