RchiOBHm_Chr3g0479721

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014158
Physical Location & Seq
Reverse (-)
25478722 .. 25479649
928 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGGAGGAGATGATGATGATGAGCAAGAAGCAAACTTGGGGAACAAGTACTACCAATTCTTGCTCAAATGCTTTGGCCATTCACAGAGACTCACAGACAATATCAAAACCAAAACCCAAAATCAGAATCATCCACATTTTTGCACCCGAAATCATCAAGACCGACGTGGCCAATTTCAGGGAGCTAGTCCAGAGGCTCACCGGAAAACCATCCGACAACGGCTGCACCAACAACAAGAAGAAGAGGGCGCAAGGAGTTCCCAGAAGGGAGTCAGAAGCTCATCAGAGAGGTGCATTCATGGCCGAGACCAAGAAAATGGAGCTGATGAGAAGTACCGGAGCCGGTGCCGGGTTCCGGGGGTTCGAGCAGTTTCCGAGATCCGAGAGAGTGATCAAGGAAGAAGAGATGATGTGGAATGCGGACAAGTCAGGTGGGTTTTTGGAGAGGTTTGCAGATTTGGAAGGGTTTATACAAGAGCTTGGTGAATTTCCTATGCTACCCAATTTGGATTCTACTTCTGCTTCAAATTCTCACTTGCTGCATGGTTTTGAAGGCACCCAACTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

189

Amino Acids

21.3

Weight (kDa)

8.93

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 46 - 72 1.1e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 344, 554
AciI CCGC 1 cut(s) 419
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 3 cut(s) 75, 168, 300
AcsI RAATTY 2 cut(s) 485, 526
AfaI GTAC 2 cut(s) 49, 334
AfiI CCNNNNNNNGG 3 cut(s) 177, 348, 354
AgsI TTSAA 2 cut(s) 525, 551
AjiI CACGTC 1 cut(s) 166
AluBI AGCT 4 cut(s) 184, 278, 322, 478
AluI AGCT 4 cut(s) 184, 278, 322, 478
Alw26I GTCTC 2 cut(s) 81, 299
AlwI GGATC 1 cut(s) 372
AoxI GGCC 3 cut(s) 75, 168, 300
ApeKI GCWGC 2 cut(s) 222, 538
ApoI RAATTY 2 cut(s) 485, 526
AspLEI GCGC 1 cut(s) 250
AsuC2I CCSGG 2 cut(s) 349, 356
AsuHPI GGTGA 2 cut(s) 190, 494
BalI TGGCCA 2 cut(s) 77, 170
BanI GGYRCC 2 cut(s) 344, 554
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BbvI GCAGC 2 cut(s) 209, 525
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 235
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 2 cut(s) 349, 356
BcoDI GTCTC 2 cut(s) 81, 299
BfaI CTAG 1 cut(s) 185
BisI GCNGC 2 cut(s) 223, 539
BlsI GCNGC 2 cut(s) 224, 540
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 349, 356
BmgBI CACGTC 1 cut(s) 166
BmiI GGNNCC 4 cut(s) 340, 346, 353, 556
BmrFI CCNGG 2 cut(s) 349, 356
BpuMI CCSGG 2 cut(s) 349, 356
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 2 cut(s) 200, 335
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 348, 354
Bse118I RCCGGY 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 129, 209
BseLI CCNNNNNNNGG 3 cut(s) 177, 348, 354
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 209, 525
BsgI GTGCAG 1 cut(s) 208
BshFI GGCC 3 cut(s) 77, 170, 302
BshNI GGYRCC 2 cut(s) 344, 554
BsiSI CCGG 5 cut(s) 201, 336, 342, 348, 355
BslI CCNNNNNNNGG 3 cut(s) 177, 348, 354
BsmAI GTCTC 2 cut(s) 81, 299
BsmI GAATGC 2 cut(s) 293, 421
BsnI GGCC 3 cut(s) 77, 170, 302
Bso31I GGTCTC 1 cut(s) 299
Bsp143I GATC 2 cut(s) 377, 390
BspACI CCGC 1 cut(s) 419
BspANI GGCC 3 cut(s) 77, 170, 302
BspLI GGNNCC 4 cut(s) 340, 346, 353, 556
BspPI GGATC 1 cut(s) 372
BspT107I GGYRCC 2 cut(s) 344, 554
BspTNI GGTCTC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 377, 390
Bst6I CTCTTC 2 cut(s) 236, 396
BstF5I GGATG 2 cut(s) 129, 209
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 380, 393
BstMAI GTCTC 2 cut(s) 81, 299
BstMBI GATC 2 cut(s) 377, 390
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 347, 354
BstV1I GCAGC 2 cut(s) 209, 525
BstX2I RGATCY 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 3 cut(s) 77, 170, 302
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 129, 209
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 341
Csp6I GTAC 2 cut(s) 48, 333
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 2 cut(s) 298, 542
CviQI GTAC 2 cut(s) 48, 333
DpnI GATC 2 cut(s) 379, 392
DpnII GATC 2 cut(s) 377, 390
EaeI YGGCCR 3 cut(s) 75, 168, 300
Eam1104I CTCTTC 2 cut(s) 236, 396
EarI CTCTTC 2 cut(s) 236, 396
Eco31I GGTCTC 1 cut(s) 299
FaeI CATG 2 cut(s) 301, 545
FaiI YATR 4 cut(s) 299, 470, 494, 543
FatI CATG 2 cut(s) 297, 541
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 223, 539
FokI GGATG 2 cut(s) 116, 196
Fsp4HI GCNGC 2 cut(s) 223, 539
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 223, 539
HaeIII GGCC 3 cut(s) 77, 170, 302
HapII CCGG 5 cut(s) 201, 336, 342, 348, 355
HhaI GCGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 301, 545
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 4 cut(s) 89, 126, 269, 509
HpaII CCGG 5 cut(s) 201, 336, 342, 348, 355
HphI GGTGA 2 cut(s) 190, 494
Hpy188I TCNGA 6 cut(s) 125, 214, 274, 285, 375, 382
Hpy188III TCNNGA 2 cut(s) 157, 190
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 3 cut(s) 258, 455, 545
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 143, 225, 293, 452, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 301, 545
HspAI GCGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 2 cut(s) 377, 390
LmnI GCTCC 3 cut(s) 181, 319, 338
LpnPI CCDG 9 cut(s) 163, 203, 214, 274, 349, 355, 361, 368, 414
Lsp1109I GCAGC 2 cut(s) 209, 525
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 379, 392
MboI GATC 2 cut(s) 377, 390
MboII GAAGA 4 cut(s) 250, 253, 410, 413
MflI RGATCY 1 cut(s) 377
MlsI TGGCCA 2 cut(s) 77, 170
MluCI AATT 5 cut(s) 55, 172, 485, 502, 526
MluNI TGGCCA 2 cut(s) 77, 170
MlyI GAGTC 2 cut(s) 83, 278
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 186, 237, 281, 438
Mox20I TGGCCA 2 cut(s) 77, 170
MscI TGGCCA 2 cut(s) 77, 170
Msp20I TGGCCA 2 cut(s) 77, 170
MspI CCGG 5 cut(s) 201, 336, 342, 348, 355
MspR9I CCNGG 2 cut(s) 349, 356
Mva1269I GAATGC 2 cut(s) 293, 421
MwoI GCNNNNNNNGC 1 cut(s) 299
NciI CCSGG 2 cut(s) 349, 356
NdeII GATC 2 cut(s) 377, 390
NlaIII CATG 2 cut(s) 301, 545
NlaIV GGNNCC 4 cut(s) 340, 346, 353, 556
NmeAIII GCCGAG 1 cut(s) 328
PctI GAATGC 2 cut(s) 293, 421
PfeI GAWTC 2 cut(s) 126, 509
PkrI GCNGC 2 cut(s) 224, 540
PleI GAGTC 2 cut(s) 83, 277
PpsI GAGTC 2 cut(s) 83, 277
PspN4I GGNNCC 4 cut(s) 340, 346, 353, 556
PsrI GAACNNNNNNTAC 2 cut(s) 34, 66
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 2 cut(s) 49, 334
RsaNI GTAC 2 cut(s) 48, 333
SatI GCNGC 2 cut(s) 223, 539
Sau3AI GATC 2 cut(s) 377, 390
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 83, 278
ScrFI CCNGG 2 cut(s) 349, 356
SetI ASST 8 cut(s) 168, 186, 280, 292, 324, 433, 449, 480
Sse9I AATT 5 cut(s) 55, 172, 485, 502, 526
SsiI CCGC 1 cut(s) 419
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 347, 354
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 363
TaqII GACCGA 1 cut(s) 176
TasI AATT 5 cut(s) 55, 172, 485, 502, 526
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 126, 509
TseI GCWGC 2 cut(s) 222, 538
TspDTI ATGAA 1 cut(s) 286
XapI RAATTY 2 cut(s) 485, 526
XspI CTAG 1 cut(s) 185
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.