RchiOBHm_Chr3g0487241

Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017590
Physical Location & Seq
Reverse (-)
34438723 .. 34439643
921 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 921 bp
ATGGTACCTGACGAGAATATCCCAGAACCAGAACCAAAGTTGTCCGGAGAGATCGAAGAAATACAATCTGAGGTTGAGAGAAAGTTCCAAGAGTTCAAGAACTTTGACATACTAGGTTATTACCCTAATGATCATCACTTTGTTTACAGGAGAGGAAAACCACGTATTGAAAGTGAATGGGAATTTATCCGTGTTAGACTACCACCGGAACCCAAACTTTCTGGTTCGATTTTTGTTAGGGTTTATGACCAGAGGATTGATCTTATGAGTGTTATGATAGTTGGTCGGGAAAGTCCTTATCACCAAGGCTTGTTTTTCTTTGACATATTCTTTCCCAGCAATTATCTCAAACTGCCTCAGCAGGAAACCGAGGATGTTCCCCCACTCTTTTACCATTCTTTTGACTTTGATTTGAACCCGAACTTGCGTAAAAACGGCACCGTTTCGCTCGACAAAACACTAAAGTGCAAGCACACATTGGAGTTACTCTCTTCACTTAAAGATCTGGTTGTGAATGACAAGTCCTACATTGATGCCGAAAAGGGCATGAAATCAAACAGAGAGGTTTTCATGCAAACTTTTGAGTCCATGCTTAAGATGCTCAAGCGCCCACCTAGGCCGTTTAAAGATTTTGTGCTGGGGTATTTTCGAACAAGAGCTCATGATATTCTTCTCAACTATAAAGCTTGTGCTGATCTTGAAGATAATGCAATGAACTCGTTATTCTTCAAGCTGGTGAGGGCATTTGAAGCTAACGGAACTTATTGCCAGCATCATTATAATCAGAAGAAGTACGATCGGGCATTGAAAGAAGAAAAGGAGCTCTTAAACCAGAGCCGGGAGAAGTATGGATATGAAAATTTTTTGTACTCACCACCAAAGATGAACAAAGCGAAGGATTGGCTTTATTTTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

306

Amino Acids

36.44

Weight (kDa)

6.73

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26991
malus_domestica MD17G1277900.v1.1
prunus_persica Prupe.3G008800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487241
rosa_laevigata RLG00000023020
rosa_multiflora Rmu_ssc0000366.1_g000013
rosa_roxburghii Rroxscaffold_6G00394980
rosa_samantha Rh3AG280500 Rh3BG316400 Rh3CG314500 Rh3DG312000
rosa_wichuraiana Rw3G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 2 cut(s) 4, 437
AccIII TCCGGA 1 cut(s) 44
AcsI RAATTY 2 cut(s) 182, 859
AfaI GTAC 3 cut(s) 6, 794, 869
AfiI CCNNNNNNNGG 1 cut(s) 838
AflII CTTAAG 1 cut(s) 593
AgsI TTSAA 7 cut(s) 97, 170, 415, 701, 730, 749, 808
AleI CACNNNNGTG 1 cut(s) 463
AluBI AGCT 5 cut(s) 659, 686, 733, 752, 823
AluI AGCT 5 cut(s) 659, 686, 733, 752, 823
Alw21I GWGCWC 2 cut(s) 661, 825
Aor13HI TCCGGA 1 cut(s) 44
AoxI GGCC 1 cut(s) 617
ApoI RAATTY 2 cut(s) 182, 859
Asp718I GGTACC 1 cut(s) 4
AspA2I CCTAGG 1 cut(s) 614
AspLEI GCGC 1 cut(s) 609
AsuC2I CCSGG 1 cut(s) 839
AsuHPI GGTGA 3 cut(s) 293, 748, 864
AsuII TTCGAA 1 cut(s) 649
AvrII CCTAGG 1 cut(s) 614
BanI GGYRCC 2 cut(s) 4, 437
BanII GRGCYC 2 cut(s) 661, 825
Bbv12I GWGCWC 2 cut(s) 661, 825
BbvCI CCTCAGC 1 cut(s) 357
BceAI ACGGC 2 cut(s) 451, 604
BcgI CGANNNNNNTGC 2 cut(s) 699, 733
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 839
BfaI CTAG 2 cut(s) 113, 615
BfoI RGCGCY 1 cut(s) 610
BfrI CTTAAG 1 cut(s) 593
BglII AGATCT 1 cut(s) 502
BlnI CCTAGG 1 cut(s) 614
Bme1390I CCNGG 1 cut(s) 839
BmiI GGNNCC 3 cut(s) 6, 210, 439
BmrFI CCNGG 1 cut(s) 839
BmsI GCATC 3 cut(s) 523, 588, 781
BplI GAGNNNNNCTC 2 cut(s) 473, 505
Bpu10I CCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 839
BsaAI YACGTR 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 304, 369, 614
BsaWI WCCGGW 2 cut(s) 44, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 838
Bse3DI GCAATG 1 cut(s) 717
BseAI TCCGGA 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 304, 369, 614
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 838
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 2 cut(s) 60, 371
BseYI CCCAGC 2 cut(s) 335, 637
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 1 cut(s) 619
BshNI GGYRCC 2 cut(s) 4, 437
BsiEI CGRYCG 1 cut(s) 799
BsiHKAI GWGCWC 2 cut(s) 661, 825
BsiSI CCGG 3 cut(s) 45, 206, 838
BslI CCNNNNNNNGG 1 cut(s) 838
BsnI GGCC 1 cut(s) 619
Bsp119I TTCGAA 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 661, 825
Bsp13I TCCGGA 1 cut(s) 44
Bsp143I GATC 6 cut(s) 51, 130, 259, 502, 694, 796
BspANI GGCC 1 cut(s) 619
BspCNI CTCAG 2 cut(s) 61, 370
BspEI TCCGGA 1 cut(s) 44
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 3 cut(s) 6, 210, 439
BspT104I TTCGAA 1 cut(s) 649
BspT107I GGYRCC 2 cut(s) 4, 437
BspTI CTTAAG 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 717
BssECI CCNNGG 3 cut(s) 304, 369, 614
BssMI GATC 6 cut(s) 51, 130, 259, 502, 694, 796
BssT1I CCWWGG 2 cut(s) 304, 614
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 1 cut(s) 496
BstAFI CTTAAG 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 649
BstC8I GCNNGC 2 cut(s) 470, 770
BstDEI CTNAG 2 cut(s) 69, 357
BstF5I GGATG 1 cut(s) 379
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 6 cut(s) 54, 133, 262, 505, 697, 799
BstMBI GATC 6 cut(s) 51, 130, 259, 502, 694, 796
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 2 cut(s) 598, 749
BstSCI CCNGG 1 cut(s) 837
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 1 cut(s) 619
BtsCI GGATG 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 470, 770
CciI TCATGA 1 cut(s) 661
CfoI GCGC 1 cut(s) 609
Csp6I GTAC 3 cut(s) 5, 793, 868
CviAII CATG 4 cut(s) 547, 571, 589, 662
CviJI RGCY 9 cut(s) 309, 619, 659, 686, 733, 752, 823, 837, 904
CviKI_1 RGCY 9 cut(s) 309, 619, 659, 686, 733, 752, 823, 837, 904
CviQI GTAC 3 cut(s) 5, 793, 868
DdeI CTNAG 2 cut(s) 69, 357
DpnI GATC 6 cut(s) 53, 132, 261, 504, 696, 798
DpnII GATC 6 cut(s) 51, 130, 259, 502, 694, 796
DraI TTTAAA 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Ecl136II GAGCTC 2 cut(s) 659, 823
Eco130I CCWWGG 2 cut(s) 304, 614
Eco24I GRGCYC 2 cut(s) 661, 825
Eco53kI GAGCTC 2 cut(s) 659, 823
EcoICRI GAGCTC 2 cut(s) 659, 823
EcoT14I CCWWGG 2 cut(s) 304, 614
EcoT38I GRGCYC 2 cut(s) 661, 825
ErhI CCWWGG 2 cut(s) 304, 614
FaeI CATG 4 cut(s) 550, 574, 592, 665
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FatI CATG 4 cut(s) 546, 570, 588, 661
FbaI TGATCA 1 cut(s) 130
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 2 cut(s) 661, 825
FspBI CTAG 2 cut(s) 113, 615
GlaI GCGC 1 cut(s) 608
GsaI CCCAGC 2 cut(s) 339, 641
HaeII RGCGCY 1 cut(s) 610
HaeIII GGCC 1 cut(s) 619
HapII CCGG 3 cut(s) 45, 206, 838
HhaI GCGC 1 cut(s) 609
Hin1II CATG 4 cut(s) 550, 574, 592, 665
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 1 cut(s) 584
HpaII CCGG 3 cut(s) 45, 206, 838
HphI GGTGA 3 cut(s) 293, 748, 864
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 70, 786
Hpy188III TCNNGA 5 cut(s) 45, 97, 287, 662, 698
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 889
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 468, 574, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 598, 749
HpyF3I CTNAG 2 cut(s) 69, 357
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 4 cut(s) 550, 574, 592, 665
HspAI GCGC 1 cut(s) 607
Kpn2I TCCGGA 1 cut(s) 44
KpnI GGTACC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 6 cut(s) 51, 130, 259, 502, 694, 796
LmnI GCTCC 1 cut(s) 820
LweI GCATC 3 cut(s) 523, 588, 781
MaeI CTAG 2 cut(s) 113, 615
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 483
MalI GATC 6 cut(s) 53, 132, 261, 504, 696, 798
MboI GATC 6 cut(s) 51, 130, 259, 502, 694, 796
MboII GAAGA 7 cut(s) 68, 483, 662, 713, 718, 799, 824
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 2 cut(s) 661, 825
MluCI AATT 3 cut(s) 182, 340, 859
MlyI GAGTC 1 cut(s) 593
MnlI CCTC 7 cut(s) 64, 146, 246, 364, 366, 556, 732
MroI TCCGGA 1 cut(s) 44
MseI TTAA 4 cut(s) 498, 594, 624, 827
MslI CAYNNNNRTG 1 cut(s) 463
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 3 cut(s) 45, 206, 838
MspR9I CCNGG 1 cut(s) 839
MwoI GCNNNNNNNGC 2 cut(s) 598, 749
NciI CCSGG 1 cut(s) 839
NdeII GATC 6 cut(s) 51, 130, 259, 502, 694, 796
NlaIII CATG 4 cut(s) 550, 574, 592, 665
NlaIV GGNNCC 3 cut(s) 6, 210, 439
NspV TTCGAA 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 463
PagI TCATGA 1 cut(s) 661
Ple19I CGATCG 1 cut(s) 799
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Ppu21I YACGTR 1 cut(s) 164
PsiI TTATAA 1 cut(s) 780
Psp124BI GAGCTC 2 cut(s) 661, 825
PspFI CCCAGC 2 cut(s) 335, 637
PspN4I GGNNCC 3 cut(s) 6, 210, 439
PsuI RGATCY 1 cut(s) 502
PvuI CGATCG 1 cut(s) 799
RsaI GTAC 3 cut(s) 6, 794, 869
RsaNI GTAC 3 cut(s) 5, 793, 868
RseI CAYNNNNRTG 1 cut(s) 463
SacI GAGCTC 2 cut(s) 661, 825
SaqAI TTAA 4 cut(s) 498, 594, 624, 827
Sau3AI GATC 6 cut(s) 51, 130, 259, 502, 694, 796
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 839
SduI GDGCHC 2 cut(s) 661, 825
SfaNI GCATC 3 cut(s) 523, 588, 781
SfuI TTCGAA 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 463
SmlI CTYRAG 2 cut(s) 593, 602
SmoI CTYRAG 2 cut(s) 593, 602
Sse9I AATT 3 cut(s) 182, 340, 859
SspMI CTAG 2 cut(s) 113, 615
SstI GAGCTC 2 cut(s) 661, 825
StyD4I CCNGG 1 cut(s) 837
StyI CCWWGG 2 cut(s) 304, 614
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 166
TaqI TCGA 4 cut(s) 54, 227, 450, 649
TasI AATT 3 cut(s) 182, 340, 859
TatI WGTACW 1 cut(s) 867
Tru1I TTAA 4 cut(s) 498, 594, 624, 827
Tru9I TTAA 4 cut(s) 498, 594, 624, 827
TspDTI ATGAA 5 cut(s) 559, 563, 728, 870, 899
TspGWI ACGGA 2 cut(s) 179, 771
Vha464I CTTAAG 1 cut(s) 593
XapI RAATTY 2 cut(s) 182, 859
XmaJI CCTAGG 1 cut(s) 614
XspI CTAG 2 cut(s) 113, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.