Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013189

Physical Location & Seq

Genomic Coordinates Forward (+)

734096 .. 735166

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCTCACTGCAATTCCCCATTTCTTTGGAGACATTAGATTCTTCAAAAAAGTTCAATTCTTTTTGCTACAGTAGAGCTGCTTCTGTTGTTTTGAATAGGGTGAATGCCATTAAGGTCTCTCGGTTCCAATCTGAGTTGCCAGTAGATGAGAGTTTTGTTGAGCAAAACCCAGATTGTTCAAGACTTGAAATTGATAAGGGAAGTAGTGGCACAAAGAAAGTGAGTAAGAGAGAAGTGGGTTTGAGGTCTAGTTCAAGAAAGAGTAAGTGGGTTAGGAAATTGGAGAATTTGTTTGTGAATGATGGTGAGTTTGATGTTGATTACTCTGTTATCAAGTCTGACCTGAGCTTAGAGCATTGTAATGATATTTTGAAAAGGCTAGAGAGGTCTAGTGATGTCAAAACTCTCAAGTTTTTTGAGTGGATGAGAAGCAATGGGAAACTCAAATGCAATTTGAGTGCTTTTAGCTCGGTTTTTCGCGTGTTGGGTAGGAGAGAAAATTGGGATGCAGCTGAGAAATTGATTCAGGAAATGGTTACTGAATTTGGATGTGAGCTGAATTATCAGGTCTTCAATACCCTTATTTATGCATGTAGTAAATTGGGACGTGTGGAGTTTGGAGCTAAGTGGTTTCGAATGATGCTTGAACATGAAGTCCAGCCGAATGTTGCGACATTTGGTATGCTGATGGGGCTTTACCAGAAGGGTTGGAATGTTGAGGAAGCCGAGTTCACTTTTTCTCGAATGAGGAACTTTGGGATTGTATGGCAGAAGAGATCATTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000428 GO:0001932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019220 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045859 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0051338 GO:0051716 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071900 GO:0080090 GO:0090304 GO:0090575 GO:1901360 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1904029 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

263

Amino Acids

30.41

Weight (kDa)

9.07

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	191 - 231	3.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30825
fragaria_vesca	FvH4_1g00580
malus_domestica	MD15G1148600.v1.1
prunus_persica	Prupe.7G266300_v2.0.a1
pyrus_communis	pycom15g13290 pycom15g13300
rosa_chinensis	RchiOBHm_Chr2g0085211
rosa_laevigata	RLG00000015667
rosa_multiflora	Rmu_sc0008510.1_g000001 Rmu_sc0008647.1_g000001 Rmu_sc0011989.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155560
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG007000 Rh2BG007600 Rh2CG008400 Rh2DG008700
rosa_wichuraiana	Rw2G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	289, 545
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	9 cut(s)	48, 58, 97, 183, 191, 258, 376, 577, 650
AjiI	CACGTC	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	1 cut(s)	767
AloI	GAACNNNNNNTCC	4 cut(s)	642, 674, 716, 748
AluBI	AGCT	6 cut(s)	80, 351, 471, 515, 559, 626
AluI	AGCT	6 cut(s)	80, 351, 471, 515, 559, 626
Alw26I	GTCTC	2 cut(s)	26, 124
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	80, 512
ApoI	RAATTY	2 cut(s)	289, 545
AsuHPI	GGTGA	2 cut(s)	115, 320
AsuII	TTCGAA	1 cut(s)	637
BarI	GAAGNNNNNNTAC	2 cut(s)	67, 99
BbsI	GAAGAC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	67, 524
BccI	CCATC	2 cut(s)	299, 685
BcoDI	GTCTC	2 cut(s)	26, 124
BfaI	CTAG	3 cut(s)	252, 383, 393
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	81, 513
BlsI	GCNGC	2 cut(s)	82, 514
BmgBI	CACGTC	1 cut(s)	611
BmiI	GGNNCC	1 cut(s)	128
BmsI	GCATC	2 cut(s)	499, 633
BpiI	GAAGAC	1 cut(s)	565
Bpu10I	CCTNAGC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	442
BseGI	GGATG	3 cut(s)	432, 514, 557
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	3 cut(s)	126, 338, 507
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	67, 524
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	621
BsmAI	GTCTC	2 cut(s)	26, 124
BsmFI	GGGAC	1 cut(s)	621
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	124
Bsp119I	TTCGAA	1 cut(s)	637
Bsp143I	GATC	1 cut(s)	779
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	127, 339, 508
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	128
BspT104I	TTCGAA	1 cut(s)	637
BspTNI	GGTCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	779
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	770
BstBI	TTCGAA	1 cut(s)	637
BstDEI	CTNAG	5 cut(s)	135, 347, 352, 516, 627
BstF5I	GGATG	3 cut(s)	432, 514, 557
BstFNI	CGCG	1 cut(s)	483
BstKTI	GATC	1 cut(s)	782
BstMAI	GTCTC	2 cut(s)	26, 124
BstMBI	GATC	1 cut(s)	779
BstMWI	GCNNNNNNNGC	1 cut(s)	694
BstNSI	RCATGY	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	67, 524
BstV2I	GAAGAC	1 cut(s)	565
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	611
BtsCI	GGATG	3 cut(s)	432, 514, 557
BtsI	GCAGTG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	8
CviAII	CATG	2 cut(s)	594, 653
DdeI	CTNAG	5 cut(s)	135, 347, 352, 516, 627
DpnI	GATC	1 cut(s)	781
DpnII	GATC	1 cut(s)	779
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Eco31I	GGTCTC	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	595
FaeI	CATG	2 cut(s)	597, 656
FaiI	YATR	5 cut(s)	591, 595, 654, 686, 769
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	2 cut(s)	593, 652
Fnu4HI	GCNGC	2 cut(s)	81, 513
FokI	GGATG	3 cut(s)	439, 521, 564
Fsp4HI	GCNGC	2 cut(s)	81, 513
FspBI	CTAG	3 cut(s)	252, 383, 393
GluI	GCNGC	2 cut(s)	81, 513
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	597, 656
HinfI	GANTC	2 cut(s)	41, 526
HphI	GGTGA	2 cut(s)	115, 320
Hpy166II	GTNNAC	1 cut(s)	735
Hpy188I	TCNGA	2 cut(s)	136, 343
Hpy188III	TCNNGA	4 cut(s)	183, 258, 530, 744
Hpy8I	GTNNAC	1 cut(s)	735
HpyAV	CCTTC	1 cut(s)	700
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	4 cut(s)	13, 453, 512, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	694
HpyF3I	CTNAG	5 cut(s)	135, 347, 352, 516, 627
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	2 cut(s)	597, 656
Kzo9I	GATC	1 cut(s)	779
LmnI	GCTCC	1 cut(s)	623
LpnPI	CCDG	7 cut(s)	156, 186, 359, 515, 554, 674, 716
Lsp1109I	GCAGC	2 cut(s)	67, 524
LweI	GCATC	2 cut(s)	499, 633
MaeI	CTAG	3 cut(s)	252, 383, 393
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	1 cut(s)	781
MboI	GATC	1 cut(s)	779
MboII	GAAGA	3 cut(s)	36, 565, 787
MmeI	TCCRAC	1 cut(s)	692
MnlI	CCTC	5 cut(s)	16, 240, 381, 715, 744
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	2 cut(s)	114, 790
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	112
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	694
NdeII	GATC	1 cut(s)	779
NlaIII	CATG	2 cut(s)	597, 656
NlaIV	GGNNCC	1 cut(s)	128
NmeAIII	GCCGAG	1 cut(s)	754
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	597
NspV	TTCGAA	1 cut(s)	637
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	41, 526
PkrI	GCNGC	2 cut(s)	82, 514
PspN4I	GGNNCC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	114, 790
SatI	GCNGC	2 cut(s)	81, 513
Sau3AI	GATC	1 cut(s)	779
SfaNI	GCATC	2 cut(s)	499, 633
SfcI	CTRYAG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SspMI	CTAG	3 cut(s)	252, 383, 393
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	2 cut(s)	637, 745
TfiI	GAWTC	2 cut(s)	41, 526
Tru1I	TTAA	2 cut(s)	114, 790
Tru9I	TTAA	2 cut(s)	114, 790
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	2 cut(s)	80, 512
TspDTI	ATGAA	1 cut(s)	669
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	2 cut(s)	289, 545
XceI	RCATGY	1 cut(s)	597
XspI	CTAG	3 cut(s)	252, 383, 393
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.