RchiOBHm_Chr2g0087101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016721
Physical Location & Seq
Reverse (-)
2000854 .. 2003260
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGGAGGCTTTGTGCTCCTCTGAGAGAAACAGCTTCTGGGTCGGCTCTGTTTTGGAAGCTATGGTGGTCAACACTGTTCTTGCTGCTCACAACTCTCTTGCTCTGTTGCTCTTGGCGACTGGATCGCTGATGAATGATATCAATGTGTCGCCAAAATTAGCTGCAGTCGCCGGAAGCTTTCCTTTTGAAGAACTATTCAAATTGGAAAAACCTGGTCCGGAAAACAAAGATGCCAGTGACACAGAAGATGACGAGGAAGATGATGATGATGATGATGTGCCTGAGGAGGAAGACGATGCAGGAGATGAGGACTTCTCAGGCGAAGAAGGGGAAGATGCAGATCCTGAGGATGAACCTGAAGCCAATGGTAATGGAGGAAGTGATGATGATGATGACGAGGACGAGGATGATGATGATGCTGACGATGATGAAGATGAGGATGCAGAGGATGAAGAAGAGGAAGAAGAGGAGGAGGAGGTTCCGCAGCCTCCTGCTAAAAAGAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.43

Weight (kDa)

4.05

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016721)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02080
malus_domestica MD02G1018600.v1.1 MD15G1162600.v1.1
prunus_persica Prupe.7G252200_v2.0.a1 Prupe.7G252200_v2.0.a1
pyrus_communis pycom02g01670
rosa_chinensis RchiOBHm_Chr2g0087101
rosa_laevigata RLG00000015832
rosa_multiflora Rmu_ssc0000239.1_g000001
rosa_roxburghii Rroxscaffold_2G00153880 Rroxscaffold_7G00210780
rosa_rugosa Rorug01G0472500 Rorug01G0472500
rosa_wichuraiana Rw2G002050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 1 cut(s) 482
AclWI GGATC 2 cut(s) 130, 335
AcuI CTGAAG 1 cut(s) 378
AgsI TTSAA 2 cut(s) 188, 199
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 4 cut(s) 33, 59, 161, 177
AluI AGCT 4 cut(s) 33, 59, 161, 177
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 2 cut(s) 130, 335
AlwNI CAGNNNCTG 2 cut(s) 36, 344
Aor13HI TCCGGA 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 83, 161, 484
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
AxyI CCTNAGG 2 cut(s) 282, 345
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 70, 148, 496
BciT130I CCWGG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 84, 162, 485
BlsI GCNGC 3 cut(s) 85, 163, 486
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 5 cut(s) 220, 286, 325, 406, 430
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BsaBI GATNNNNATC 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 124, 234
Bse21I CCTNAGG 2 cut(s) 282, 345
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 4 cut(s) 355, 412, 445, 454
BseJI GATNNNNATC 1 cut(s) 339
BseMII CTCAG 4 cut(s) 12, 273, 330, 336
BseNI ACTGG 2 cut(s) 124, 234
BseRI GAGGAG 5 cut(s) 7, 299, 482, 485, 488
BseXI GCAGC 3 cut(s) 70, 148, 496
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 171, 218
Bsp1286I GDGCHC 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 2 cut(s) 122, 340
BspACI CCGC 1 cut(s) 482
BspCNI CTCAG 4 cut(s) 13, 274, 329, 337
BspEI TCCGGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 480
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 130, 335
BsrI ACTGG 2 cut(s) 124, 234
BssMI GATC 2 cut(s) 122, 340
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 2 cut(s) 450, 459
BstDEI CTNAG 4 cut(s) 21, 282, 316, 345
BstF5I GGATG 4 cut(s) 355, 412, 445, 454
BstKTI GATC 2 cut(s) 125, 343
BstMBI GATC 2 cut(s) 122, 340
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 70, 148, 496
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
Bsu36I CCTNAGG 2 cut(s) 282, 345
BtsCI GGATG 4 cut(s) 355, 412, 445, 454
BtsIMutI CAGTG 2 cut(s) 72, 241
CaiI CAGNNNCTG 2 cut(s) 36, 344
Cfr13I GGNCC 1 cut(s) 215
CsiI ACCWGGT 1 cut(s) 211
CviJI RGCY 8 cut(s) 8, 33, 45, 59, 161, 177, 362, 487
CviKI_1 RGCY 8 cut(s) 8, 33, 45, 59, 161, 177, 362, 487
DdeI CTNAG 4 cut(s) 21, 282, 316, 345
DpnI GATC 2 cut(s) 124, 342
DpnII GATC 2 cut(s) 122, 340
Eam1104I CTCTTC 2 cut(s) 450, 459
EarI CTCTTC 2 cut(s) 450, 459
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 378
Eco81I CCTNAGG 2 cut(s) 282, 345
EcoRII CCWGG 1 cut(s) 211
EcoRV GATATC 1 cut(s) 139
FaiI YATR 1 cut(s) 62
FalI AAGNNNNNCTT 2 cut(s) 166, 198
Fnu4HI GCNGC 3 cut(s) 84, 162, 485
FokI GGATG 4 cut(s) 362, 419, 452, 461
Fsp4HI GCNGC 3 cut(s) 84, 162, 485
GluI GCNGC 3 cut(s) 84, 162, 485
HapII CCGG 2 cut(s) 171, 218
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 175
HpaII CCGG 2 cut(s) 171, 218
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 218, 344
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 4 cut(s) 164, 299, 338, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 4 cut(s) 21, 282, 316, 345
Kpn2I TCCGGA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 122, 340
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 3 cut(s) 70, 148, 496
LweI GCATC 5 cut(s) 220, 286, 325, 406, 430
MabI ACCWGGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 124, 342
MboI GATC 2 cut(s) 122, 340
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 155, 200
MroI TCCGGA 1 cut(s) 217
MspI CCGG 2 cut(s) 171, 218
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 122, 340
NlaIV GGNNCC 1 cut(s) 480
NmuCI GTSAC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 85, 163, 486
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 2 cut(s) 36, 344
PsuI RGATCY 1 cut(s) 340
SatI GCNGC 3 cut(s) 84, 162, 485
Sau3AI GATC 2 cut(s) 122, 340
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 17
SetI ASST 7 cut(s) 35, 61, 163, 179, 214, 358, 480
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 5 cut(s) 220, 286, 325, 406, 430
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 215
Sse9I AATT 2 cut(s) 155, 200
SsiI CCGC 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 76
TasI AATT 2 cut(s) 155, 200
TscAI CASTG 2 cut(s) 79, 241
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 3 cut(s) 83, 161, 484
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 146, 366, 444, 465
TspRI CASTG 2 cut(s) 79, 241
VpaK11BI GGWCC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.