RchiOBHm_Chr2g0087461

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017781
Physical Location & Seq
Forward (+)
2197847 .. 2198215
369 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 168 bp
ATGGCATCCGACTTTACATGTGCAGAGTTTGAGACACCTCAATCCGTCCTCATAGGAGCCAGGCATATGGCTTTTTTAAACCCTTTCTTATTTGACTTAGGGTGGGTTTCTCACAAAGGTTTTGTGAGGTTGTTTTACACCCTAGCAGTACATCTCGTGTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

55

Amino Acids

6.26

Weight (kDa)

6.8

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017781)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0087461
rosa_laevigata RLG00000015870
rosa_multiflora Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016
rosa_roxburghii Rroxscaffold_2G00153520
rosa_rugosa Rorug01G0475600 Rorug01G0475700
rosa_samantha Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100
rosa_wichuraiana Rw2G002310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 150
AflIII ACRYGT 1 cut(s) 17
AjnI CCWGG 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 26
BauI CACGAG 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 58
BssSI CACGAG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 5
BstMAI GTCTC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 5
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 18
CviJI RGCY 2 cut(s) 59, 71
CviKI_1 RGCY 2 cut(s) 59, 71
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 97
DraI TTTAAA 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 59
FaeI CATG 1 cut(s) 21
FaiI YATR 4 cut(s) 19, 53, 66, 68
FatI CATG 1 cut(s) 17
FauNDI CATATG 1 cut(s) 66
FspBI CTAG 1 cut(s) 143
Hin1II CATG 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 23, 162
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 1 cut(s) 21
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 2 cut(s) 46, 73
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 48, 59, 120
MseI TTAA 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
NdeI CATATG 1 cut(s) 66
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 58
NspI RCATGY 1 cut(s) 21
PciI ACATGT 1 cut(s) 17
PscI ACATGT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 61
SetI ASST 3 cut(s) 40, 121, 131
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 4 cut(s) 30, 72, 73, 155
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 59
TatI WGTACW 1 cut(s) 148
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 21
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.