Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0087461 |
| rosa_laevigata | RLG00000015870 |
| rosa_multiflora | Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00153520 |
| rosa_rugosa | Rorug01G0475600 Rorug01G0475700 |
| rosa_samantha | Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100 |
| rosa_wichuraiana | Rw2G002310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 179, 551 |
| AcvI | CACGTG | 1 cut(s) | 446 |
| AcyI | GRCGYC | 2 cut(s) | 150, 338 |
| AfaI | GTAC | 2 cut(s) | 186, 473 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 178 |
| AflIII | ACRYGT | 3 cut(s) | 365, 445, 497 |
| AgsI | TTSAA | 3 cut(s) | 161, 292, 542 |
| AjiI | CACGTC | 1 cut(s) | 500 |
| AjnI | CCWGG | 1 cut(s) | 407 |
| AluBI | AGCT | 3 cut(s) | 176, 631, 689 |
| AluI | AGCT | 3 cut(s) | 176, 631, 689 |
| Alw21I | GWGCWC | 2 cut(s) | 106, 633 |
| Alw26I | GTCTC | 2 cut(s) | 122, 374 |
| Alw44I | GTGCAC | 1 cut(s) | 102 |
| AoxI | GGCC | 1 cut(s) | 594 |
| ApaLI | GTGCAC | 1 cut(s) | 102 |
| ApeKI | GCWGC | 4 cut(s) | 56, 176, 419, 553 |
| AseI | ATTAAT | 1 cut(s) | 615 |
| AsuII | TTCGAA | 1 cut(s) | 463 |
| AxyI | CCTNAGG | 1 cut(s) | 342 |
| BaeGI | GKGCMC | 1 cut(s) | 106 |
| BanII | GRGCYC | 1 cut(s) | 633 |
| BbrPI | CACGTG | 1 cut(s) | 446 |
| BbsI | GAAGAC | 2 cut(s) | 77, 645 |
| Bbv12I | GWGCWC | 2 cut(s) | 106, 633 |
| BbvI | GCAGC | 4 cut(s) | 43, 163, 406, 540 |
| BccI | CCATC | 2 cut(s) | 343, 509 |
| BciT130I | CCWGG | 1 cut(s) | 409 |
| BcoDI | GTCTC | 2 cut(s) | 122, 374 |
| BfaI | CTAG | 1 cut(s) | 690 |
| BfmI | CTRYAG | 2 cut(s) | 238, 247 |
| BisI | GCNGC | 5 cut(s) | 57, 177, 420, 551, 554 |
| BlsI | GCNGC | 5 cut(s) | 58, 178, 421, 552, 555 |
| BmcAI | AGTACT | 1 cut(s) | 473 |
| Bme1390I | CCNGG | 1 cut(s) | 409 |
| BmgBI | CACGTC | 1 cut(s) | 500 |
| BmiI | GGNNCC | 1 cut(s) | 406 |
| BmrFI | CCNGG | 1 cut(s) | 409 |
| BmsI | GCATC | 3 cut(s) | 43, 362, 559 |
| BpiI | GAAGAC | 2 cut(s) | 77, 645 |
| Bpu14I | TTCGAA | 1 cut(s) | 463 |
| BpuEI | CTTGAG | 2 cut(s) | 446, 506 |
| BsaAI | YACGTR | 1 cut(s) | 446 |
| BsaHI | GRCGYC | 2 cut(s) | 150, 338 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 178 |
| Bse21I | CCTNAGG | 1 cut(s) | 342 |
| BseBI | CCWGG | 1 cut(s) | 409 |
| BseGI | GGATG | 2 cut(s) | 199, 353 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 178 |
| BseMII | CTCAG | 2 cut(s) | 57, 333 |
| BseRI | GAGGAG | 1 cut(s) | 359 |
| BseSI | GKGCMC | 1 cut(s) | 106 |
| BseXI | GCAGC | 4 cut(s) | 43, 163, 406, 540 |
| BseYI | CCCAGC | 1 cut(s) | 172 |
| BsgI | GTGCAG | 3 cut(s) | 390, 539, 690 |
| BshFI | GGCC | 1 cut(s) | 596 |
| BsiHKAI | GWGCWC | 2 cut(s) | 106, 633 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 178 |
| BsmAI | GTCTC | 2 cut(s) | 122, 374 |
| BsnI | GGCC | 1 cut(s) | 596 |
| Bsp119I | TTCGAA | 1 cut(s) | 463 |
| Bsp1286I | GDGCHC | 2 cut(s) | 106, 633 |
| BspACI | CCGC | 2 cut(s) | 179, 551 |
| BspANI | GGCC | 1 cut(s) | 596 |
| BspCNI | CTCAG | 2 cut(s) | 56, 334 |
| BspHI | TCATGA | 1 cut(s) | 22 |
| BspLI | GGNNCC | 1 cut(s) | 406 |
| BspMAI | CTGCAG | 1 cut(s) | 251 |
| BspT104I | TTCGAA | 1 cut(s) | 463 |
| BssNI | GRCGYC | 2 cut(s) | 150, 338 |
| Bst2UI | CCWGG | 1 cut(s) | 409 |
| Bst4CI | ACNGT | 1 cut(s) | 76 |
| BstACI | GRCGYC | 2 cut(s) | 150, 338 |
| BstBAI | YACGTR | 1 cut(s) | 446 |
| BstBI | TTCGAA | 1 cut(s) | 463 |
| BstDEI | CTNAG | 3 cut(s) | 43, 342, 683 |
| BstF5I | GGATG | 2 cut(s) | 199, 353 |
| BstMAI | GTCTC | 2 cut(s) | 122, 374 |
| BstNI | CCWGG | 1 cut(s) | 409 |
| BstNSI | RCATGY | 1 cut(s) | 369 |
| BstSCI | CCNGG | 1 cut(s) | 407 |
| BstSFI | CTRYAG | 2 cut(s) | 238, 247 |
| BstSLI | GKGCMC | 1 cut(s) | 106 |
| BstV1I | GCAGC | 4 cut(s) | 43, 163, 406, 540 |
| BstV2I | GAAGAC | 2 cut(s) | 77, 645 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 415 |
| Bsu36I | CCTNAGG | 1 cut(s) | 342 |
| BsuRI | GGCC | 1 cut(s) | 596 |
| BtgZI | GCGATG | 1 cut(s) | 582 |
| BtrI | CACGTC | 1 cut(s) | 500 |
| BtsCI | GGATG | 2 cut(s) | 199, 353 |
| CciI | TCATGA | 1 cut(s) | 22 |
| CseI | GACGC | 2 cut(s) | 158, 346 |
| Csp6I | GTAC | 2 cut(s) | 185, 472 |
| CviAII | CATG | 2 cut(s) | 23, 366 |
| CviQI | GTAC | 2 cut(s) | 185, 472 |
| DdeI | CTNAG | 3 cut(s) | 43, 342, 683 |
| Ecl136II | GAGCTC | 1 cut(s) | 631 |
| Eco24I | GRGCYC | 1 cut(s) | 633 |
| Eco53kI | GAGCTC | 1 cut(s) | 631 |
| Eco72I | CACGTG | 1 cut(s) | 446 |
| Eco81I | CCTNAGG | 1 cut(s) | 342 |
| EcoICRI | GAGCTC | 1 cut(s) | 631 |
| EcoRII | CCWGG | 1 cut(s) | 407 |
| EcoT38I | GRGCYC | 1 cut(s) | 633 |
| FaeI | CATG | 2 cut(s) | 26, 369 |
| FatI | CATG | 2 cut(s) | 22, 365 |
| FauNDI | CATATG | 1 cut(s) | 414 |
| Fnu4HI | GCNGC | 5 cut(s) | 57, 177, 420, 551, 554 |
| FokI | GGATG | 2 cut(s) | 206, 340 |
| FriOI | GRGCYC | 1 cut(s) | 633 |
| Fsp4HI | GCNGC | 5 cut(s) | 57, 177, 420, 551, 554 |
| FspBI | CTAG | 1 cut(s) | 690 |
| GluI | GCNGC | 5 cut(s) | 57, 177, 420, 551, 554 |
| GsaI | CCCAGC | 1 cut(s) | 176 |
| HaeIII | GGCC | 1 cut(s) | 596 |
| HgaI | GACGC | 2 cut(s) | 158, 346 |
| Hin1I | GRCGYC | 2 cut(s) | 150, 338 |
| Hin1II | CATG | 2 cut(s) | 26, 369 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| Hpy166II | GTNNAC | 3 cut(s) | 104, 148, 187 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 63, 127, 325, 358 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 425, 485, 589 |
| Hpy8I | GTNNAC | 3 cut(s) | 104, 148, 187 |
| HpyAV | CCTTC | 1 cut(s) | 586 |
| HpyCH4III | ACNGT | 1 cut(s) | 76 |
| HpyCH4IV | ACGT | 2 cut(s) | 445, 499 |
| HpyF3I | CTNAG | 3 cut(s) | 43, 342, 683 |
| HpySE526I | ACGT | 2 cut(s) | 445, 499 |
| Hsp92I | GRCGYC | 2 cut(s) | 150, 338 |
| Hsp92II | CATG | 2 cut(s) | 26, 369 |
| LmnI | GCTCC | 2 cut(s) | 404, 636 |
| LpnPI | CCDG | 9 cut(s) | 186, 243, 354, 394, 421, 525, 544, 602, 648 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 163, 406, 540 |
| LweI | GCATC | 3 cut(s) | 43, 362, 559 |
| MaeI | CTAG | 1 cut(s) | 690 |
| MaeII | ACGT | 2 cut(s) | 445, 499 |
| MaeIII | GTNAC | 2 cut(s) | 242, 619 |
| MboII | GAAGA | 4 cut(s) | 77, 239, 291, 650 |
| MfeI | CAATTG | 1 cut(s) | 161 |
| MhlI | GDGCHC | 2 cut(s) | 106, 633 |
| MluCI | AATT | 4 cut(s) | 93, 161, 167, 454 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MnlI | CCTC | 7 cut(s) | 127, 175, 207, 337, 396, 407, 595 |
| MseI | TTAA | 2 cut(s) | 615, 659 |
| MslI | CAYNNNNRTG | 2 cut(s) | 192, 712 |
| MspA1I | CMGCKG | 2 cut(s) | 176, 553 |
| MspR9I | CCNGG | 1 cut(s) | 409 |
| MunI | CAATTG | 1 cut(s) | 161 |
| MvaI | CCWGG | 1 cut(s) | 409 |
| NdeI | CATATG | 1 cut(s) | 414 |
| NlaIII | CATG | 2 cut(s) | 26, 369 |
| NlaIV | GGNNCC | 1 cut(s) | 406 |
| NspI | RCATGY | 1 cut(s) | 369 |
| NspV | TTCGAA | 1 cut(s) | 463 |
| PagI | TCATGA | 1 cut(s) | 22 |
| PciI | ACATGT | 1 cut(s) | 365 |
| PkrI | GCNGC | 5 cut(s) | 58, 178, 421, 552, 555 |
| PmaCI | CACGTG | 1 cut(s) | 446 |
| PmlI | CACGTG | 1 cut(s) | 446 |
| Ppu21I | YACGTR | 1 cut(s) | 446 |
| PscI | ACATGT | 1 cut(s) | 365 |
| PshBI | ATTAAT | 1 cut(s) | 615 |
| Psp124BI | GAGCTC | 1 cut(s) | 633 |
| Psp6I | CCWGG | 1 cut(s) | 407 |
| PspCI | CACGTG | 1 cut(s) | 446 |
| PspFI | CCCAGC | 1 cut(s) | 172 |
| PspGI | CCWGG | 1 cut(s) | 407 |
| PspN4I | GGNNCC | 1 cut(s) | 406 |
| PstI | CTGCAG | 1 cut(s) | 251 |
| PvuII | CAGCTG | 1 cut(s) | 176 |
| RsaI | GTAC | 2 cut(s) | 186, 473 |
| RsaNI | GTAC | 2 cut(s) | 185, 472 |
| RseI | CAYNNNNRTG | 2 cut(s) | 192, 712 |
| SacI | GAGCTC | 1 cut(s) | 633 |
| SaqAI | TTAA | 2 cut(s) | 615, 659 |
| SatI | GCNGC | 5 cut(s) | 57, 177, 420, 551, 554 |
| ScaI | AGTACT | 1 cut(s) | 473 |
| ScrFI | CCNGG | 1 cut(s) | 409 |
| SduI | GDGCHC | 2 cut(s) | 106, 633 |
| SfaNI | GCATC | 3 cut(s) | 43, 362, 559 |
| SfcI | CTRYAG | 2 cut(s) | 238, 247 |
| SfuI | TTCGAA | 1 cut(s) | 463 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 192, 712 |
| SmlI | CTYRAG | 2 cut(s) | 425, 485 |
| SmoI | CTYRAG | 2 cut(s) | 425, 485 |
| Sse9I | AATT | 4 cut(s) | 93, 161, 167, 454 |
| SsiI | CCGC | 2 cut(s) | 179, 551 |
| SspMI | CTAG | 1 cut(s) | 690 |
| SstI | GAGCTC | 1 cut(s) | 633 |
| StyD4I | CCNGG | 1 cut(s) | 407 |
| TaaI | ACNGT | 1 cut(s) | 76 |
| TaiI | ACGT | 2 cut(s) | 448, 502 |
| TaqI | TCGA | 1 cut(s) | 463 |
| TasI | AATT | 4 cut(s) | 93, 161, 167, 454 |
| TatI | WGTACW | 1 cut(s) | 471 |
| TauI | GCSGC | 1 cut(s) | 553 |
| Tru1I | TTAA | 2 cut(s) | 615, 659 |
| Tru9I | TTAA | 2 cut(s) | 615, 659 |
| TseI | GCWGC | 4 cut(s) | 56, 176, 419, 553 |
| TspDTI | ATGAA | 2 cut(s) | 8, 39 |
| TspGWI | ACGGA | 1 cut(s) | 382 |
| VneI | GTGCAC | 1 cut(s) | 102 |
| VspI | ATTAAT | 1 cut(s) | 615 |
| XceI | RCATGY | 1 cut(s) | 369 |
| XspI | CTAG | 1 cut(s) | 690 |
| ZrmI | AGTACT | 1 cut(s) | 473 |