Rorug01G0475700

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017781
Physical Location & Seq
Forward (+)
56577205 .. 56579759
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0475700.1

Sequence Viewer

Length: 1617 bp
ATGATGATGATGGTCCATCATGACAACCGTGGCCGTCCAGATCAAAGATGTGACGGTGGCGATGGTCCCACGTGTAACAGACCCCCTGGTGTTGCAGAACCAGCAGCTGGTTCTTCTAGTAGTAGTAGTGGAGGTTCAGTTTTGAGAGGCTTGCAGCCTTTTCAGTACTTATCAAATACAAATACTCATCATCACACCTCAACCGCTCTCAGATCCCCAGGAGGCATGACGACAGCAGCTTTGGATTTTCCTTTCACTAATCAACAGTGGAAGGAGCTTGAGAGGCAAGCCATGATTTACAAGTACATGATGGCTTCTATCCCTGTGCCTCGTGACCTCCTCTTTCCCACTACCACCGCCTCCGCCTCCGCCTCGGTTTCTCAATCTCCATTGAGCGGCGGTGGGTTCAATTTGAGGCTGTCGAATAGCAAAGATCCGGAGCCGGGGCGGTGCAAGAGGACGGACGGGAAGAAATGGAGGTGTTCGAGAGATGTTGCGCCGAACCAGAAGTACTGTGAGCGCCACATGCACAGAGGCCGTCCCCGTTCAAGAAAGCATGTGGAAATTCATGCCAACAATACTACAAGCACCACTGCTACCACCGCTAAGAGGGTTCGCCGTGACAACAACAATAGCAACAACATTCGGCCACTATCTCCTCCCACTATCTCGAATCCAAGCCACGAGATGAGCAAAAATGGGTACCCGACTCAGTTTTTCGGATCTTCACTTCAACCATTTCATCAGACTCAGATGTATTTGGACAAGGCCGGTGTAAAGTCTGCACCTTTTGGAGGTGGTGTAAACTCTGTTTCATCAGACAGAGGAGTCAGAGGCGTGGAGTGGATGATGAAAACTGAAGCTGCTCCGATGAGTAGCTCCGATGCGCAATGGCACGATATGATGCAGAGCAAAACAGAGCTGAGCTGCTCTAGGATCCCCTACTTCGATGCAAATAGTTCTGTTTTCGGCCAGCGTTCTGAGGAAGAGTGTTTCTTGAATCTAAATTCTTATACAAATTTCAATGCCGGAGATGGTCATCATCAACAACAAGGTAATGATTGCAACATGTTTCTGAATCCTGATGTGGTTGCTTTGGAAAACCCTCTACTCGAAGAAACCCCAAGAAGCTTCATCGATGCTTGGTCCAAAAACGACAACGGAGACAACAACAACAGCTCTCTTCCATCAAGTGGGAAGCTCTCACCTTCTTCATTGACACTATCAATGGGAGGCTACAATTCCATTAGCGATGAGATGGGTCAGACGCAGATGAGCTTGGGATGTAGCCATGGAAGTGGAAACGGGATTAAGCCACAAGTCTCGACCTGGCTCACCCCTGCTTCTTGGGTTCCTTCTCCGCCTGGTGGGCCTTTAGCCGAGGTCTTAAAGCCCACCACCAGCGCCGCCTCAAACCCGTCGTCTCCGATCACCACTAACGGTAACCACGGCGAGTTTAGTAGCCCATTGGGGAATACGGTGTCGTCGCCATCGGGGGTTCTTCAAAAAACGTTTGCTTCATTCTCTGATAGCAGTGGAAATAGTAGCCCAAATCTTACGAGTTCAAGGGCCAAAACAGAGACTGTTTCTCTGTGGTCGAATCAGAGCAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

538

Amino Acids

58.08

Weight (kDa)

8.77

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 84 - 116 8.5e-13 QLQ
WRC PF08879 146 - 188 1.2e-20 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017781)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0087461
rosa_laevigata RLG00000015870
rosa_multiflora Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016
rosa_roxburghii Rroxscaffold_2G00153520
rosa_rugosa Rorug01G0475600 Rorug01G0475700
rosa_samantha Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100
rosa_wichuraiana Rw2G002310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 827
Acc16I TGCGCA 1 cut(s) 888
Acc65I GGTACC 1 cut(s) 702
AccB1I GGYRCC 1 cut(s) 702
AccB7I CCANNNNNTGG 2 cut(s) 107, 1193
AccBSI CCGCTC 2 cut(s) 206, 396
AccIII TCCGGA 1 cut(s) 436
AclI AACGTT 1 cut(s) 1511
AclWI GGATC 5 cut(s) 207, 428, 730, 931, 944
AcoI YGGCCR 3 cut(s) 31, 647, 970
AcsI RAATTY 3 cut(s) 564, 1006, 1018
AcuI CTGAAG 1 cut(s) 879
AcvI CACGTG 1 cut(s) 72
AfaI GTAC 4 cut(s) 167, 305, 512, 704
AfiI CCNNNNNNNGG 7 cut(s) 107, 395, 443, 609, 794, 1193, 1367
AflIII ACRYGT 2 cut(s) 71, 1068
AgsI TTSAA 7 cut(s) 409, 549, 734, 1000, 1024, 1505, 1566
AjnI CCWGG 4 cut(s) 85, 217, 1328, 1363
Alw26I GTCTC 4 cut(s) 1158, 1327, 1428, 1574
AlwI GGATC 5 cut(s) 207, 428, 730, 931, 944
AlwNI CAGNNNCTG 2 cut(s) 107, 1583
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 7 cut(s) 31, 535, 647, 768, 970, 1370, 1569
ApeKI GCWGC 5 cut(s) 104, 154, 236, 863, 927
ApoI RAATTY 3 cut(s) 564, 1006, 1018
ArsI GACNNNNNNTTYG 4 cut(s) 223, 255, 1406, 1438
Asp718I GGTACC 1 cut(s) 702
AspLEI GCGC 4 cut(s) 499, 522, 889, 1406
AspS9I GGNCC 5 cut(s) 13, 65, 1146, 1370, 1569
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 3 cut(s) 1197, 1327, 1423
AvaII GGWCC 3 cut(s) 13, 65, 1146
BamHI GGATCC 1 cut(s) 936
BanI GGYRCC 1 cut(s) 702
BauI CACGAG 2 cut(s) 330, 683
BbrPI CACGTG 1 cut(s) 72
BbvI GCAGC 5 cut(s) 116, 166, 248, 850, 914
BccI CCATC 8 cut(s) 4, 24, 56, 304, 1028, 1195, 1252, 1498
BceAI ACGGC 4 cut(s) 18, 522, 603, 1465
BciT130I CCWGG 4 cut(s) 87, 219, 1330, 1365
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 4 cut(s) 1158, 1327, 1428, 1574
BfaI CTAG 2 cut(s) 117, 933
BfoI RGCGCY 2 cut(s) 523, 1407
BglI GCCNNNNNGGC 1 cut(s) 1369
BisI GCNGC 7 cut(s) 105, 155, 237, 397, 864, 928, 1407
BlpI GCTNAGC 1 cut(s) 923
BlsI GCNGC 7 cut(s) 106, 156, 238, 398, 865, 929, 1408
BmcAI AGTACT 2 cut(s) 167, 512
Bme1390I CCNGG 5 cut(s) 87, 219, 444, 1330, 1365
Bme18I GGWCC 3 cut(s) 13, 65, 1146
BmgT120I GGNCC 5 cut(s) 13, 65, 1146, 1370, 1569
BmiI GGNNCC 5 cut(s) 67, 441, 704, 938, 1353
BmrFI CCNGG 5 cut(s) 87, 219, 444, 1330, 1365
BmsI GCATC 4 cut(s) 874, 894, 940, 1129
Bpu1102I GCTNAGC 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 444
Bsa29I ATCGAT 1 cut(s) 1137
BsaAI YACGTR 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 1038
BsaJI CCNNGG 8 cut(s) 28, 85, 217, 372, 443, 1291, 1380, 1447
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 786, 816
Bsc4I CCNNNNNNNGG 7 cut(s) 107, 395, 443, 609, 794, 1193, 1367
Bse118I RCCGGY 1 cut(s) 770
Bse3DI GCAATG 1 cut(s) 896
Bse8I GATNNNNATC 1 cut(s) 1038
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 4 cut(s) 87, 219, 1330, 1365
BseCI ATCGAT 1 cut(s) 1137
BseDI CCNNGG 8 cut(s) 28, 85, 217, 372, 443, 1291, 1380, 1447
BseGI GGATG 2 cut(s) 852, 1289
BseJI GATNNNNATC 1 cut(s) 1038
BseLI CCNNNNNNNGG 7 cut(s) 107, 395, 443, 609, 794, 1193, 1367
BseMI GCAATG 1 cut(s) 896
BseMII CTCAG 5 cut(s) 223, 725, 764, 914, 972
BseRI GAGGAG 3 cut(s) 329, 648, 840
BseXI GCAGC 5 cut(s) 116, 166, 248, 850, 914
BsgI GTGCAG 1 cut(s) 768
BshFI GGCC 7 cut(s) 33, 537, 649, 770, 972, 1372, 1571
BshNI GGYRCC 1 cut(s) 702
BshVI ATCGAT 1 cut(s) 1137
BsiSI CCGG 4 cut(s) 437, 443, 771, 1029
BslFI GGGAC 2 cut(s) 51, 525
BslI CCNNNNNNNGG 7 cut(s) 107, 395, 443, 609, 794, 1193, 1367
BsmAI GTCTC 4 cut(s) 1158, 1327, 1428, 1574
BsmBI CGTCTC 1 cut(s) 1428
BsmFI GGGAC 2 cut(s) 51, 525
BsnI GGCC 7 cut(s) 33, 537, 649, 770, 972, 1372, 1571
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 6 cut(s) 40, 212, 433, 722, 936, 1428
Bsp1720I GCTNAGC 1 cut(s) 923
Bsp19I CCATGG 1 cut(s) 1291
BspANI GGCC 7 cut(s) 33, 537, 649, 770, 972, 1372, 1571
BspCNI CTCAG 5 cut(s) 222, 724, 763, 915, 973
BspDI ATCGAT 1 cut(s) 1137
BspEI TCCGGA 1 cut(s) 436
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 5 cut(s) 67, 441, 704, 938, 1353
BspPI GGATC 5 cut(s) 207, 428, 730, 931, 944
BspT107I GGYRCC 1 cut(s) 702
BsrBI CCGCTC 2 cut(s) 206, 396
BsrDI GCAATG 1 cut(s) 896
BsrFI RCCGGY 1 cut(s) 770
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 8 cut(s) 28, 85, 217, 372, 443, 1291, 1380, 1447
BssMI GATC 6 cut(s) 40, 212, 433, 722, 936, 1428
BssSI CACGAG 2 cut(s) 330, 683
BssT1I CCWWGG 1 cut(s) 1291
Bst2BI CACGAG 2 cut(s) 330, 683
Bst2UI CCWGG 4 cut(s) 87, 219, 1330, 1365
Bst4CI ACNGT 7 cut(s) 29, 56, 267, 515, 1442, 1480, 1585
Bst6I CTCTTC 2 cut(s) 981, 1188
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 3 cut(s) 152, 288, 974
BstDEI CTNAG 6 cut(s) 209, 606, 711, 750, 923, 981
BstDSI CCRYGG 3 cut(s) 28, 1291, 1447
BstEII GGTNACC 1 cut(s) 1442
BstENI CCTNNNNNAGG 1 cut(s) 792
BstF5I GGATG 2 cut(s) 852, 1289
BstH2I RGCGCY 2 cut(s) 523, 1407
BstHHI GCGC 4 cut(s) 499, 522, 889, 1406
BstKTI GATC 6 cut(s) 43, 215, 436, 725, 939, 1431
BstMAI GTCTC 4 cut(s) 1158, 1327, 1428, 1574
BstMBI GATC 6 cut(s) 40, 212, 433, 722, 936, 1428
BstMWI GCNNNNNNNGC 5 cut(s) 101, 283, 526, 602, 1369
BstNI CCWGG 4 cut(s) 87, 219, 1330, 1365
BstNSI RCATGY 3 cut(s) 529, 560, 1072
BstPI GGTNACC 1 cut(s) 1442
BstSCI CCNGG 5 cut(s) 85, 217, 442, 1328, 1363
BstV1I GCAGC 5 cut(s) 116, 166, 248, 850, 914
BstX2I RGATCY 4 cut(s) 212, 433, 722, 936
BstXI CCANNNNNNTGG 1 cut(s) 1298
BstYI RGATCY 4 cut(s) 212, 433, 722, 936
Bsu15I ATCGAT 1 cut(s) 1137
BsuRI GGCC 7 cut(s) 33, 537, 649, 770, 972, 1372, 1571
BsuTUI ATCGAT 1 cut(s) 1137
BtgI CCRYGG 3 cut(s) 28, 1291, 1447
BtgZI GCGATG 2 cut(s) 75, 1266
BtsCI GGATG 2 cut(s) 852, 1289
BtsI GCAGTG 2 cut(s) 591, 1540
BtsIMutI CAGTG 3 cut(s) 272, 591, 1540
Cac8I GCNNGC 3 cut(s) 152, 288, 974
CaiI CAGNNNCTG 2 cut(s) 107, 1583
CciI TCATGA 1 cut(s) 19
CfoI GCGC 4 cut(s) 499, 522, 889, 1406
Cfr10I RCCGGY 1 cut(s) 770
Cfr13I GGNCC 5 cut(s) 13, 65, 1146, 1370, 1569
ClaI ATCGAT 1 cut(s) 1137
CseI GACGC 1 cut(s) 1276
Csp6I GTAC 4 cut(s) 166, 304, 511, 703
CviAII CATG 9 cut(s) 20, 226, 292, 307, 526, 557, 569, 1069, 1292
CviQI GTAC 4 cut(s) 166, 304, 511, 703
DdeI CTNAG 6 cut(s) 209, 606, 711, 750, 923, 981
DpnI GATC 6 cut(s) 42, 214, 435, 724, 938, 1430
DpnII GATC 6 cut(s) 40, 212, 433, 722, 936, 1428
DrdI GACNNNNNNGTC 1 cut(s) 827
DseDI GACNNNNNNGTC 1 cut(s) 827
EaeI YGGCCR 3 cut(s) 31, 647, 970
Eam1104I CTCTTC 2 cut(s) 981, 1188
EarI CTCTTC 2 cut(s) 981, 1188
EciI GGCGGA 3 cut(s) 352, 358, 1350
Eco130I CCWWGG 1 cut(s) 1291
Eco47I GGWCC 3 cut(s) 13, 65, 1146
Eco57I CTGAAG 1 cut(s) 879
Eco72I CACGTG 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 1442
EcoNI CCTNNNNNAGG 1 cut(s) 792
EcoO65I GGTNACC 1 cut(s) 1442
EcoRII CCWGG 4 cut(s) 85, 217, 1328, 1363
EcoT14I CCWWGG 1 cut(s) 1291
ErhI CCWWGG 1 cut(s) 1291
Esp3I CGTCTC 1 cut(s) 1428
FaeI CATG 9 cut(s) 23, 229, 295, 310, 529, 560, 572, 1072, 1295
FaqI GGGAC 2 cut(s) 51, 525
FatI CATG 9 cut(s) 19, 225, 291, 306, 525, 556, 568, 1068, 1291
Fnu4HI GCNGC 7 cut(s) 105, 155, 237, 397, 864, 928, 1407
FokI GGATG 2 cut(s) 859, 1296
Fsp4HI GCNGC 7 cut(s) 105, 155, 237, 397, 864, 928, 1407
FspBI CTAG 2 cut(s) 117, 933
FspI TGCGCA 1 cut(s) 888
GlaI GCGC 4 cut(s) 498, 521, 888, 1405
GluI GCNGC 7 cut(s) 105, 155, 237, 397, 864, 928, 1407
HaeII RGCGCY 2 cut(s) 523, 1407
HaeIII GGCC 7 cut(s) 33, 537, 649, 770, 972, 1372, 1571
HapII CCGG 4 cut(s) 437, 443, 771, 1029
HgaI GACGC 1 cut(s) 1276
HhaI GCGC 4 cut(s) 499, 522, 889, 1406
Hin1II CATG 9 cut(s) 23, 229, 295, 310, 529, 560, 572, 1072, 1295
Hin6I GCGC 4 cut(s) 497, 520, 887, 1404
HinP1I GCGC 4 cut(s) 497, 520, 887, 1404
HindIII AAGCTT 1 cut(s) 1129
HinfI GANTC 7 cut(s) 673, 709, 748, 828, 1000, 1078, 1600
HpaII CCGG 4 cut(s) 437, 443, 771, 1029
HphI GGTGA 3 cut(s) 1197, 1327, 1423
Hpy166II GTNNAC 1 cut(s) 805
Hpy8I GTNNAC 1 cut(s) 805
Hpy99I CGWCG 2 cut(s) 1423, 1489
HpyAV CCTTC 3 cut(s) 265, 1218, 1365
HpyCH4III ACNGT 7 cut(s) 29, 56, 267, 515, 1442, 1480, 1585
HpyCH4IV ACGT 2 cut(s) 71, 1511
HpyCH4V TGCA 8 cut(s) 95, 154, 453, 529, 785, 907, 953, 1065
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 283, 526, 602, 1369
HpyF3I CTNAG 6 cut(s) 209, 606, 711, 750, 923, 981
HpySE526I ACGT 2 cut(s) 71, 1511
Hsp92II CATG 9 cut(s) 23, 229, 295, 310, 529, 560, 572, 1072, 1295
HspAI GCGC 4 cut(s) 497, 520, 887, 1404
Kpn2I TCCGGA 1 cut(s) 436
KpnI GGTACC 1 cut(s) 706
Kzo9I GATC 6 cut(s) 40, 212, 433, 722, 936, 1428
LmnI GCTCC 4 cut(s) 274, 439, 871, 884
Lsp1109I GCAGC 5 cut(s) 116, 166, 248, 850, 914
LweI GCATC 4 cut(s) 874, 894, 940, 1129
MaeI CTAG 2 cut(s) 117, 933
MaeII ACGT 2 cut(s) 71, 1511
MaeIII GTNAC 5 cut(s) 50, 74, 332, 620, 1442
MalI GATC 6 cut(s) 42, 214, 435, 724, 938, 1430
MbiI CCGCTC 2 cut(s) 206, 396
MboI GATC 6 cut(s) 40, 212, 433, 722, 936, 1428
MboII GAAGA 8 cut(s) 105, 481, 717, 998, 1127, 1175, 1203, 1493
MflI RGATCY 4 cut(s) 212, 433, 722, 936
MluCI AATT 5 cut(s) 409, 564, 1006, 1018, 1240
MlyI GAGTC 3 cut(s) 703, 742, 837
MroI TCCGGA 1 cut(s) 436
MseI TTAA 2 cut(s) 1311, 1388
MslI CAYNNNNRTG 1 cut(s) 1296
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 4 cut(s) 437, 443, 771, 1029
MspR9I CCNGG 5 cut(s) 87, 219, 444, 1330, 1365
MvaI CCWGG 4 cut(s) 87, 219, 1330, 1365
MwoI GCNNNNNNNGC 5 cut(s) 101, 283, 526, 602, 1369
NciI CCSGG 1 cut(s) 444
NcoI CCATGG 1 cut(s) 1291
NdeII GATC 6 cut(s) 40, 212, 433, 722, 936, 1428
NlaIII CATG 9 cut(s) 23, 229, 295, 310, 529, 560, 572, 1072, 1295
NlaIV GGNNCC 5 cut(s) 67, 441, 704, 938, 1353
NmeAIII GCCGAG 1 cut(s) 1405
NmuCI GTSAC 3 cut(s) 50, 332, 620
NsbI TGCGCA 1 cut(s) 888
NspI RCATGY 3 cut(s) 529, 560, 1072
PagI TCATGA 1 cut(s) 19
PciI ACATGT 1 cut(s) 1068
PfeI GAWTC 4 cut(s) 673, 1000, 1078, 1600
PflMI CCANNNNNTGG 2 cut(s) 107, 1193
PkrI GCNGC 7 cut(s) 106, 156, 238, 398, 865, 929, 1408
PleI GAGTC 3 cut(s) 703, 742, 836
PmaCI CACGTG 1 cut(s) 72
PmlI CACGTG 1 cut(s) 72
PpsI GAGTC 3 cut(s) 703, 742, 836
Ppu21I YACGTR 1 cut(s) 72
PscI ACATGT 1 cut(s) 1068
Psp1406I AACGTT 1 cut(s) 1511
Psp6I CCWGG 4 cut(s) 85, 217, 1328, 1363
PspCI CACGTG 1 cut(s) 72
PspEI GGTNACC 1 cut(s) 1442
PspGI CCWGG 4 cut(s) 85, 217, 1328, 1363
PspN4I GGNNCC 5 cut(s) 67, 441, 704, 938, 1353
PspPI GGNCC 5 cut(s) 13, 65, 1146, 1370, 1569
PsrI GAACNNNNNNTAC 4 cut(s) 118, 150, 494, 526
PstNI CAGNNNCTG 2 cut(s) 107, 1583
PsuI RGATCY 4 cut(s) 212, 433, 722, 936
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 4 cut(s) 167, 305, 512, 704
RsaNI GTAC 4 cut(s) 166, 304, 511, 703
RseI CAYNNNNRTG 1 cut(s) 1296
SaqAI TTAA 2 cut(s) 1311, 1388
SatI GCNGC 7 cut(s) 105, 155, 237, 397, 864, 928, 1407
Sau3AI GATC 6 cut(s) 40, 212, 433, 722, 936, 1428
Sau96I GGNCC 5 cut(s) 13, 65, 1146, 1370, 1569
ScaI AGTACT 2 cut(s) 167, 512
SchI GAGTC 3 cut(s) 703, 742, 837
ScrFI CCNGG 5 cut(s) 87, 219, 444, 1330, 1365
SfaNI GCATC 4 cut(s) 874, 894, 940, 1129
SinI GGWCC 3 cut(s) 13, 65, 1146
SmiMI CAYNNNNRTG 1 cut(s) 1296
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 5 cut(s) 409, 564, 1006, 1018, 1240
SspMI CTAG 2 cut(s) 117, 933
StyD4I CCNGG 5 cut(s) 85, 217, 442, 1328, 1363
StyI CCWWGG 1 cut(s) 1291
TaaI ACNGT 7 cut(s) 29, 56, 267, 515, 1442, 1480, 1585
TaiI ACGT 2 cut(s) 74, 1514
TaqI TCGA 8 cut(s) 422, 485, 671, 948, 1113, 1137, 1325, 1598
TasI AATT 5 cut(s) 409, 564, 1006, 1018, 1240
TatI WGTACW 3 cut(s) 165, 303, 510
TauI GCSGC 2 cut(s) 399, 1409
TfiI GAWTC 4 cut(s) 673, 1000, 1078, 1600
Tru1I TTAA 2 cut(s) 1311, 1388
Tru9I TTAA 2 cut(s) 1311, 1388
TscAI CASTG 3 cut(s) 272, 598, 1540
TseFI GTSAC 3 cut(s) 50, 332, 620
TseI GCWGC 5 cut(s) 104, 154, 236, 863, 927
Tsp45I GTSAC 3 cut(s) 50, 332, 620
TspDTI ATGAA 7 cut(s) 557, 731, 804, 866, 1123, 1203, 1509
TspGWI ACGGA 2 cut(s) 476, 1176
TspRI CASTG 3 cut(s) 272, 598, 1540
Van91I CCANNNNNTGG 2 cut(s) 107, 1193
VpaK11BI GGWCC 3 cut(s) 13, 65, 1146
XagI CCTNNNNNAGG 1 cut(s) 792
XapI RAATTY 3 cut(s) 564, 1006, 1018
XceI RCATGY 3 cut(s) 529, 560, 1072
XspI CTAG 2 cut(s) 117, 933
ZrmI AGTACT 2 cut(s) 167, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.