Rorug01G0475600

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017781
Physical Location & Seq
Forward (+)
56571490 .. 56573415
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0475600.1

Sequence Viewer

Length: 219 bp
ATGGGTTACGTTCTTCGAGTGAGGTTGGCGTCGTTCTTCGCCGGAGCTGCGGTGGCGTCGTTTACGGGGCTTTACATCCTTCACAATGACTACAAGGTCGCTCATGAGGCCATTTCTCGTCAGGTGAAAGGCCTCCATGAGTCACTGGACAGACGAATTTCAGCTGTTGAGAGTTTAAAACAAACTGAAGCTCCACAACCTGCAGAAGCAGCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

72

Amino Acids

7.89

Weight (kDa)

6.83

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017781)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0087461
rosa_laevigata RLG00000015870
rosa_multiflora Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016
rosa_roxburghii Rroxscaffold_2G00153520
rosa_rugosa Rorug01G0475600 Rorug01G0475700
rosa_samantha Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100
rosa_wichuraiana Rw2G002310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 208
AciI CCGC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 2 cut(s) 29, 56
AluBI AGCT 4 cut(s) 47, 164, 191, 212
AluI AGCT 4 cut(s) 47, 164, 191, 212
AoxI GGCC 2 cut(s) 108, 130
ApeKI GCWGC 2 cut(s) 47, 209
ApoI RAATTY 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 136
BbvI GCAGC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 2 cut(s) 48, 210
BlsI GCNGC 2 cut(s) 49, 211
BsaHI GRCGYC 2 cut(s) 29, 56
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 175, 205
Bse1I ACTGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 2 cut(s) 110, 132
BsiSI CCGG 1 cut(s) 42
BsnI GGCC 2 cut(s) 110, 132
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 110, 132
BspHI TCATGA 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 208
BsrI ACTGG 1 cut(s) 150
BssNI GRCGYC 2 cut(s) 29, 56
BstACI GRCGYC 2 cut(s) 29, 56
BstF5I GGATG 1 cut(s) 75
BstMWI GCNNNNNNNGC 4 cut(s) 47, 53, 107, 209
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 2 cut(s) 110, 132
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 103
CseI GACGC 2 cut(s) 18, 45
CviAII CATG 2 cut(s) 104, 137
CviJI RGCY 7 cut(s) 47, 70, 110, 132, 164, 191, 212
CviKI_1 RGCY 7 cut(s) 47, 70, 110, 132, 164, 191, 212
DraI TTTAAA 1 cut(s) 177
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 207
FaeI CATG 2 cut(s) 107, 140
FaiI YATR 2 cut(s) 105, 138
FatI CATG 2 cut(s) 103, 136
Fnu4HI GCNGC 2 cut(s) 48, 210
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 48, 210
GluI GCNGC 2 cut(s) 48, 210
HaeIII GGCC 2 cut(s) 110, 132
HapII CCGG 1 cut(s) 42
HgaI GACGC 2 cut(s) 18, 45
Hin1I GRCGYC 2 cut(s) 29, 56
Hin1II CATG 2 cut(s) 107, 140
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 2 cut(s) 34, 61
HpyAV CCTTC 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 53, 107, 209
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 2 cut(s) 29, 56
Hsp92II CATG 2 cut(s) 107, 140
LmnI GCTCC 2 cut(s) 44, 196
LpnPI CCDG 4 cut(s) 55, 107, 131, 213
Lsp1109I GCAGC 1 cut(s) 34
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 5, 141
MboII GAAGA 2 cut(s) 5, 28
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 15, 100, 143
MseI TTAA 1 cut(s) 176
MspA1I CMGCKG 2 cut(s) 164, 212
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 47, 53, 107, 209
NlaIII CATG 2 cut(s) 107, 140
NmuCI GTSAC 1 cut(s) 141
PagI TCATGA 1 cut(s) 103
PceI AGGCCT 1 cut(s) 132
PkrI GCNGC 2 cut(s) 49, 211
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 205
PvuII CAGCTG 2 cut(s) 164, 212
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 2 cut(s) 48, 210
SchI GAGTC 1 cut(s) 149
SetI ASST 9 cut(s) 12, 26, 49, 99, 126, 166, 193, 202, 214
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 156
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 1 cut(s) 50
StuI AGGCCT 1 cut(s) 132
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 156
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 2 cut(s) 47, 209
Tsp45I GTSAC 1 cut(s) 141
TspRI CASTG 1 cut(s) 150
XapI RAATTY 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.