Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017781

Physical Location & Seq

Genomic Coordinates Forward (+)

2007381 .. 2007914

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTAGATGCTTCTGAAGCGAAAAAAACATTACTCTATTACTACTTTCATCATGAAAGTAGTAAATATCTCTCAGATTATGATGCTGCTCTGACTTCTCTCACAGTTTGGTGTCTTTACTCAATTATGAGTGCACTACGGGATTATGCAAAATCAGAGACAGAGGTTGATGATGTTGACGCCAAGTTTCAATTGCAATTCCCTGCGGAGTTTGGACTGCAAGTGTCATCAGACAACACAATGGGGGATCCTGAGGAGATGGCATCCGACTTTACATGTGCAGAGTTCGAGACACCTCAATCTGTCCTCATAGGAGCCAGGCATATGGTATGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

113

Amino Acids

12.7

Weight (kDa)

4.3

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017781)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087461
rosa_laevigata	RLG00000015870
rosa_multiflora	Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153520
rosa_rugosa	Rorug01G0475600 Rorug01G0475700
rosa_samantha	Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100
rosa_wichuraiana	Rw2G002310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	2 cut(s)	242, 255
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	317
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	152, 284
Alw44I	GTGCAC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	242, 255
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	152, 284
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	249, 316
BmrFI	CCNGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	73, 272
BsaHI	GRCGYC	1 cut(s)	180
Bse21I	CCTNAGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	263
BseMII	CTCAG	2 cut(s)	87, 243
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	152, 284
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	206
BspCNI	CTCAG	2 cut(s)	86, 244
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	249, 316
BspPI	GGATC	2 cut(s)	242, 255
BssMI	GATC	1 cut(s)	247
BssNI	GRCGYC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	73, 252
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	152, 284
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	263
CciI	TCATGA	1 cut(s)	52
CseI	GACGC	1 cut(s)	188
CviAII	CATG	2 cut(s)	53, 276
CviJI	RGCY	1 cut(s)	317
CviKI_1	RGCY	1 cut(s)	317
DdeI	CTNAG	2 cut(s)	73, 252
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	56, 279
FaiI	YATR	9 cut(s)	54, 81, 128, 147, 277, 311, 324, 326, 331
FatI	CATG	2 cut(s)	52, 275
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
HgaI	GACGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	56, 279
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	134, 178
Hpy188I	TCNGA	6 cut(s)	16, 76, 93, 157, 232, 268
Hpy188III	TCNNGA	3 cut(s)	53, 251, 289
Hpy8I	GTNNAC	2 cut(s)	134, 178
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	5 cut(s)	134, 149, 196, 220, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	73, 252
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	56, 279
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	4 cut(s)	216, 264, 304, 331
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	73, 272
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	3 cut(s)	123, 191, 197
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	4 cut(s)	157, 247, 306, 317
MseI	TTAA	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	319
MunI	CAATTG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	56, 279
NlaIV	GGNNCC	2 cut(s)	249, 316
NspI	RCATGY	1 cut(s)	279
PagI	TCATGA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	249, 316
PsuI	RGATCY	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	337
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	2 cut(s)	168, 298
SfaNI	GCATC	2 cut(s)	73, 272
Sse9I	AATT	3 cut(s)	123, 191, 197
SsiI	CCGC	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	288
TasI	AATT	3 cut(s)	123, 191, 197
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	38, 69
VneI	GTGCAC	1 cut(s)	132
XceI	RCATGY	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.