Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017781

Physical Location & Seq

Genomic Coordinates Forward (+)

2207271 .. 2208107

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG029300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATGTTGACGCCAAGTTTCAATTGCAATTCCCTGCGGAGGTACACGGGGATGAGTTTAGACCTTATAAGAGACTCAAAAGAGAAGAACCATTCTATAGTAACTGCAGAAAGGCTGGACTATGCCAAGTTGCAAGAAGATTTGGTTTCAACTTTGAGCAGTTTGGACTGCAAGTGTCATCAGACAACACAATGGGGGATCCTGAGGAGACGTACGCCTGGGGAGATGGCATCCGACTTTACATGTGCAGAGTTTGAGACACCTCAATCCGTCCTCATAGGAGCCAGGCATATGTCTGCTCTTGAGATAAGTTGTGAGCCACGTGTGAGATATTATGTTCGAAGCAAGTACTTGGATATTCTTGAGTTATCAACACGTCCAAAACACCTGATGGAAACGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

134

Amino Acids

15.49

Weight (kDa)

7.66

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017781)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087461
rosa_laevigata	RLG00000015870
rosa_multiflora	Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153520
rosa_rugosa	Rorug01G0475600 Rorug01G0475700
rosa_samantha	Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100
rosa_wichuraiana	Rw2G002310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	2 cut(s)	193, 206
AcvI	CACGTG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	3 cut(s)	44, 214, 350
AfiI	CCNNNNNNNGG	1 cut(s)	39
AflIII	ACRYGT	3 cut(s)	242, 322, 374
AgsI	TTSAA	2 cut(s)	22, 150
AjiI	CACGTC	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	217, 284
Alw26I	GTCTC	3 cut(s)	66, 202, 251
AlwI	GGATC	2 cut(s)	193, 206
AsuII	TTCGAA	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	198
BbrPI	CACGTG	1 cut(s)	323
BccI	CCATC	2 cut(s)	220, 385
BciT130I	CCWGG	2 cut(s)	219, 286
BcoDI	GTCTC	3 cut(s)	66, 202, 251
BfmI	CTRYAG	2 cut(s)	96, 105
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	219, 286
BmgBI	CACGTC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	200, 283
BmrFI	CCNGG	2 cut(s)	219, 286
BmsI	GCATC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	323, 383
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse21I	CCTNAGG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	219, 286
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	2 cut(s)	57, 230
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	267
BsiWI	CGTACG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	3 cut(s)	66, 202, 251
BsmBI	CGTCTC	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	200, 283
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	2 cut(s)	193, 206
BspT104I	TTCGAA	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	219, 286
BstACI	GRCGYC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	57, 230
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	3 cut(s)	66, 202, 251
BstMBI	GATC	1 cut(s)	198
BstNI	CCWGG	2 cut(s)	219, 286
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	217, 284
BstSFI	CTRYAG	2 cut(s)	96, 105
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	203
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	57, 230
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	3 cut(s)	43, 213, 349
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	3 cut(s)	115, 284, 319
CviKI_1	RGCY	3 cut(s)	115, 284, 319
CviQI	GTAC	3 cut(s)	43, 213, 349
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eco72I	CACGTG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	217, 284
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	1 cut(s)	246
FaiI	YATR	8 cut(s)	68, 98, 123, 244, 278, 291, 293, 336
FatI	CATG	1 cut(s)	242
FauNDI	CATATG	1 cut(s)	291
FokI	GGATG	2 cut(s)	64, 217
HgaI	GACGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	9, 45
Hpy188I	TCNGA	2 cut(s)	183, 235
Hpy188III	TCNNGA	3 cut(s)	202, 302, 362
Hpy8I	GTNNAC	2 cut(s)	9, 45
HpyCH4IV	ACGT	3 cut(s)	211, 322, 376
HpyCH4V	TGCA	5 cut(s)	27, 107, 133, 171, 248
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	3 cut(s)	211, 322, 376
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	8 cut(s)	47, 101, 204, 215, 231, 271, 298, 401
LweI	GCATC	1 cut(s)	239
MaeII	ACGT	3 cut(s)	211, 322, 376
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	97, 149
MfeI	CAATTG	1 cut(s)	22
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	2 cut(s)	22, 28
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	4 cut(s)	33, 198, 273, 284
MslI	CAYNNNNRTG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	219, 286
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	219, 286
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	2 cut(s)	200, 283
NspI	RCATGY	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	340
PciI	ACATGT	1 cut(s)	242
Pfl23II	CGTACG	1 cut(s)	212
PleI	GAGTC	1 cut(s)	68
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	323
PscI	ACATGT	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	217, 284
PspCI	CACGTG	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	217, 284
PspLI	CGTACG	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	200, 283
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	3 cut(s)	44, 214, 350
RsaNI	GTAC	3 cut(s)	43, 213, 349
RseI	CAYNNNNRTG	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	219, 286
SetI	ASST	7 cut(s)	44, 66, 214, 265, 325, 379, 390
SfaNI	GCATC	1 cut(s)	239
SfcI	CTRYAG	2 cut(s)	96, 105
SfuI	TTCGAA	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	302, 362
SmoI	CTYRAG	2 cut(s)	302, 362
Sse9I	AATT	2 cut(s)	22, 28
SsiI	CCGC	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	217, 284
TaiI	ACGT	3 cut(s)	214, 325, 379
TaqI	TCGA	1 cut(s)	340
TasI	AATT	2 cut(s)	22, 28
TatI	WGTACW	1 cut(s)	348
TspGWI	ACGGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.