Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0087461 |
| rosa_laevigata | RLG00000015870 |
| rosa_multiflora | Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00153520 |
| rosa_rugosa | Rorug01G0475600 Rorug01G0475700 |
| rosa_samantha | Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100 |
| rosa_wichuraiana | Rw2G002310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 209, 584 |
| AclWI | GGATC | 2 cut(s) | 365, 378 |
| AcuI | CTGAAG | 1 cut(s) | 36 |
| AcvI | CACGTG | 1 cut(s) | 479 |
| AcyI | GRCGYC | 1 cut(s) | 183 |
| AfaI | GTAC | 2 cut(s) | 216, 506 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 211 |
| AflIII | ACRYGT | 2 cut(s) | 478, 530 |
| AgsI | TTSAA | 4 cut(s) | 194, 322, 511, 575 |
| AjiI | CACGTC | 1 cut(s) | 533 |
| AjnI | CCWGG | 1 cut(s) | 440 |
| Alw21I | GWGCWC | 1 cut(s) | 139 |
| Alw26I | GTCTC | 2 cut(s) | 155, 407 |
| Alw44I | GTGCAC | 1 cut(s) | 135 |
| AlwI | GGATC | 2 cut(s) | 365, 378 |
| AoxI | GGCC | 1 cut(s) | 627 |
| ApaLI | GTGCAC | 1 cut(s) | 135 |
| ApeKI | GCWGC | 3 cut(s) | 89, 452, 586 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 383, 415 |
| AsuII | TTCGAA | 1 cut(s) | 496 |
| AxyI | CCTNAGG | 1 cut(s) | 375 |
| BaeGI | GKGCMC | 1 cut(s) | 139 |
| BamHI | GGATCC | 1 cut(s) | 370 |
| BbrPI | CACGTG | 1 cut(s) | 479 |
| Bbv12I | GWGCWC | 1 cut(s) | 139 |
| BbvI | GCAGC | 3 cut(s) | 76, 439, 573 |
| BccI | CCATC | 2 cut(s) | 376, 542 |
| BciT130I | CCWGG | 1 cut(s) | 442 |
| BcoDI | GTCTC | 2 cut(s) | 155, 407 |
| BfmI | CTRYAG | 2 cut(s) | 268, 277 |
| BisI | GCNGC | 4 cut(s) | 90, 453, 584, 587 |
| BlsI | GCNGC | 4 cut(s) | 91, 454, 585, 588 |
| BmcAI | AGTACT | 1 cut(s) | 506 |
| Bme1390I | CCNGG | 1 cut(s) | 442 |
| BmgBI | CACGTC | 1 cut(s) | 533 |
| BmiI | GGNNCC | 2 cut(s) | 372, 439 |
| BmrFI | CCNGG | 1 cut(s) | 442 |
| BmsI | GCATC | 3 cut(s) | 76, 395, 592 |
| Bpu14I | TTCGAA | 1 cut(s) | 496 |
| BpuEI | CTTGAG | 2 cut(s) | 479, 539 |
| BsaAI | YACGTR | 1 cut(s) | 479 |
| BsaHI | GRCGYC | 1 cut(s) | 183 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 211 |
| Bse21I | CCTNAGG | 1 cut(s) | 375 |
| Bse3DI | GCAATG | 1 cut(s) | 32 |
| BseBI | CCWGG | 1 cut(s) | 442 |
| BseGI | GGATG | 2 cut(s) | 229, 386 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BseMI | GCAATG | 1 cut(s) | 32 |
| BseMII | CTCAG | 2 cut(s) | 90, 366 |
| BseRI | GAGGAG | 1 cut(s) | 392 |
| BseSI | GKGCMC | 1 cut(s) | 139 |
| BseXI | GCAGC | 3 cut(s) | 76, 439, 573 |
| BsgI | GTGCAG | 1 cut(s) | 572 |
| BshFI | GGCC | 1 cut(s) | 629 |
| BsiHKAI | GWGCWC | 1 cut(s) | 139 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BsmAI | GTCTC | 2 cut(s) | 155, 407 |
| BsnI | GGCC | 1 cut(s) | 629 |
| Bsp119I | TTCGAA | 1 cut(s) | 496 |
| Bsp1286I | GDGCHC | 1 cut(s) | 139 |
| Bsp143I | GATC | 1 cut(s) | 370 |
| BspACI | CCGC | 2 cut(s) | 209, 584 |
| BspANI | GGCC | 1 cut(s) | 629 |
| BspCNI | CTCAG | 2 cut(s) | 89, 367 |
| BspHI | TCATGA | 1 cut(s) | 55 |
| BspLI | GGNNCC | 2 cut(s) | 372, 439 |
| BspMAI | CTGCAG | 1 cut(s) | 281 |
| BspPI | GGATC | 2 cut(s) | 365, 378 |
| BspT104I | TTCGAA | 1 cut(s) | 496 |
| BsrDI | GCAATG | 1 cut(s) | 32 |
| BssMI | GATC | 1 cut(s) | 370 |
| BssNI | GRCGYC | 1 cut(s) | 183 |
| Bst2UI | CCWGG | 1 cut(s) | 442 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| Bst6I | CTCTTC | 1 cut(s) | 627 |
| BstACI | GRCGYC | 1 cut(s) | 183 |
| BstBAI | YACGTR | 1 cut(s) | 479 |
| BstBI | TTCGAA | 1 cut(s) | 496 |
| BstDEI | CTNAG | 2 cut(s) | 76, 375 |
| BstF5I | GGATG | 2 cut(s) | 229, 386 |
| BstKTI | GATC | 1 cut(s) | 373 |
| BstMAI | GTCTC | 2 cut(s) | 155, 407 |
| BstMBI | GATC | 1 cut(s) | 370 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 17, 592 |
| BstNI | CCWGG | 1 cut(s) | 442 |
| BstSCI | CCNGG | 1 cut(s) | 440 |
| BstSFI | CTRYAG | 2 cut(s) | 268, 277 |
| BstSLI | GKGCMC | 1 cut(s) | 139 |
| BstV1I | GCAGC | 3 cut(s) | 76, 439, 573 |
| BstX2I | RGATCY | 1 cut(s) | 370 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 448 |
| BstYI | RGATCY | 1 cut(s) | 370 |
| Bsu36I | CCTNAGG | 1 cut(s) | 375 |
| BsuRI | GGCC | 1 cut(s) | 629 |
| BtgZI | GCGATG | 1 cut(s) | 615 |
| BtrI | CACGTC | 1 cut(s) | 533 |
| BtsCI | GGATG | 2 cut(s) | 229, 386 |
| CciI | TCATGA | 1 cut(s) | 55 |
| CseI | GACGC | 1 cut(s) | 191 |
| Csp6I | GTAC | 2 cut(s) | 215, 505 |
| CviAII | CATG | 1 cut(s) | 56 |
| CviJI | RGCY | 8 cut(s) | 247, 287, 440, 452, 475, 583, 595, 629 |
| CviKI_1 | RGCY | 8 cut(s) | 247, 287, 440, 452, 475, 583, 595, 629 |
| CviQI | GTAC | 2 cut(s) | 215, 505 |
| DdeI | CTNAG | 2 cut(s) | 76, 375 |
| DpnI | GATC | 1 cut(s) | 372 |
| DpnII | GATC | 1 cut(s) | 370 |
| Eam1104I | CTCTTC | 1 cut(s) | 627 |
| EarI | CTCTTC | 1 cut(s) | 627 |
| Eco57I | CTGAAG | 1 cut(s) | 36 |
| Eco72I | CACGTG | 1 cut(s) | 479 |
| Eco81I | CCTNAGG | 1 cut(s) | 375 |
| EcoRII | CCWGG | 1 cut(s) | 440 |
| FaeI | CATG | 1 cut(s) | 59 |
| FatI | CATG | 1 cut(s) | 55 |
| FauI | CCCGC | 1 cut(s) | 202 |
| FauNDI | CATATG | 1 cut(s) | 447 |
| Fnu4HI | GCNGC | 4 cut(s) | 90, 453, 584, 587 |
| FokI | GGATG | 2 cut(s) | 236, 373 |
| Fsp4HI | GCNGC | 4 cut(s) | 90, 453, 584, 587 |
| GluI | GCNGC | 4 cut(s) | 90, 453, 584, 587 |
| HaeIII | GGCC | 1 cut(s) | 629 |
| HgaI | GACGC | 1 cut(s) | 191 |
| Hin1I | GRCGYC | 1 cut(s) | 183 |
| Hin1II | CATG | 1 cut(s) | 59 |
| HincII | GTYRAC | 1 cut(s) | 181 |
| HindII | GTYRAC | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 3 cut(s) | 137, 181, 217 |
| Hpy188I | TCNGA | 4 cut(s) | 79, 160, 355, 391 |
| Hpy188III | TCNNGA | 6 cut(s) | 14, 56, 374, 458, 518, 622 |
| Hpy8I | GTNNAC | 3 cut(s) | 137, 181, 217 |
| HpyAV | CCTTC | 1 cut(s) | 619 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyCH4IV | ACGT | 2 cut(s) | 478, 532 |
| HpyCH4V | TGCA | 9 cut(s) | 137, 152, 199, 279, 305, 343, 404, 589, 605 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 17, 592 |
| HpyF3I | CTNAG | 2 cut(s) | 76, 375 |
| HpySE526I | ACGT | 2 cut(s) | 478, 532 |
| Hsp92I | GRCGYC | 1 cut(s) | 183 |
| Hsp92II | CATG | 1 cut(s) | 59 |
| Kzo9I | GATC | 1 cut(s) | 370 |
| LmnI | GCTCC | 2 cut(s) | 16, 437 |
| LpnPI | CCDG | 9 cut(s) | 27, 219, 273, 387, 427, 454, 558, 577, 635 |
| Lsp1109I | GCAGC | 3 cut(s) | 76, 439, 573 |
| LweI | GCATC | 3 cut(s) | 76, 395, 592 |
| MaeII | ACGT | 2 cut(s) | 478, 532 |
| MaeIII | GTNAC | 1 cut(s) | 272 |
| MalI | GATC | 1 cut(s) | 372 |
| MboI | GATC | 1 cut(s) | 370 |
| MboII | GAAGA | 3 cut(s) | 269, 321, 644 |
| MfeI | CAATTG | 1 cut(s) | 194 |
| MflI | RGATCY | 1 cut(s) | 370 |
| MhlI | GDGCHC | 1 cut(s) | 139 |
| MluCI | AATT | 3 cut(s) | 126, 194, 200 |
| MmeI | TCCRAC | 1 cut(s) | 414 |
| MnlI | CCTC | 6 cut(s) | 160, 237, 370, 429, 440, 628 |
| MseI | TTAA | 1 cut(s) | 649 |
| MslI | CAYNNNNRTG | 1 cut(s) | 222 |
| MspA1I | CMGCKG | 1 cut(s) | 586 |
| MspR9I | CCNGG | 1 cut(s) | 442 |
| MunI | CAATTG | 1 cut(s) | 194 |
| MvaI | CCWGG | 1 cut(s) | 442 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 17, 592 |
| NdeI | CATATG | 1 cut(s) | 447 |
| NdeII | GATC | 1 cut(s) | 370 |
| NlaIII | CATG | 1 cut(s) | 59 |
| NlaIV | GGNNCC | 2 cut(s) | 372, 439 |
| NspV | TTCGAA | 1 cut(s) | 496 |
| PagI | TCATGA | 1 cut(s) | 55 |
| PkrI | GCNGC | 4 cut(s) | 91, 454, 585, 588 |
| PmaCI | CACGTG | 1 cut(s) | 479 |
| PmlI | CACGTG | 1 cut(s) | 479 |
| Ppu21I | YACGTR | 1 cut(s) | 479 |
| Psp6I | CCWGG | 1 cut(s) | 440 |
| PspCI | CACGTG | 1 cut(s) | 479 |
| PspGI | CCWGG | 1 cut(s) | 440 |
| PspN4I | GGNNCC | 2 cut(s) | 372, 439 |
| PstI | CTGCAG | 1 cut(s) | 281 |
| PsuI | RGATCY | 1 cut(s) | 370 |
| RsaI | GTAC | 2 cut(s) | 216, 506 |
| RsaNI | GTAC | 2 cut(s) | 215, 505 |
| RseI | CAYNNNNRTG | 1 cut(s) | 222 |
| SaqAI | TTAA | 1 cut(s) | 649 |
| SatI | GCNGC | 4 cut(s) | 90, 453, 584, 587 |
| Sau3AI | GATC | 1 cut(s) | 370 |
| ScaI | AGTACT | 1 cut(s) | 506 |
| ScrFI | CCNGG | 1 cut(s) | 442 |
| SduI | GDGCHC | 1 cut(s) | 139 |
| SetI | ASST | 5 cut(s) | 171, 421, 481, 535, 547 |
| SfaNI | GCATC | 3 cut(s) | 76, 395, 592 |
| SfcI | CTRYAG | 2 cut(s) | 268, 277 |
| SfuI | TTCGAA | 1 cut(s) | 496 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 222 |
| SmlI | CTYRAG | 2 cut(s) | 458, 518 |
| SmoI | CTYRAG | 2 cut(s) | 458, 518 |
| Sse9I | AATT | 3 cut(s) | 126, 194, 200 |
| SsiI | CCGC | 2 cut(s) | 209, 584 |
| SspI | AATATT | 1 cut(s) | 514 |
| StyD4I | CCNGG | 1 cut(s) | 440 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TaiI | ACGT | 2 cut(s) | 481, 535 |
| TaqI | TCGA | 1 cut(s) | 496 |
| TasI | AATT | 3 cut(s) | 126, 194, 200 |
| TatI | WGTACW | 1 cut(s) | 504 |
| TauI | GCSGC | 1 cut(s) | 586 |
| Tru1I | TTAA | 1 cut(s) | 649 |
| Tru9I | TTAA | 1 cut(s) | 649 |
| TseI | GCWGC | 3 cut(s) | 89, 452, 586 |
| TspDTI | ATGAA | 2 cut(s) | 41, 72 |
| TspGWI | ACGGA | 1 cut(s) | 415 |
| VneI | GTGCAC | 1 cut(s) | 135 |
| ZrmI | AGTACT | 1 cut(s) | 506 |