Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0087461 |
| rosa_laevigata | RLG00000015870 |
| rosa_multiflora | Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00153520 |
| rosa_rugosa | Rorug01G0475600 Rorug01G0475700 |
| rosa_samantha | Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100 |
| rosa_wichuraiana | Rw2G002310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 80, 455 |
| AclWI | GGATC | 2 cut(s) | 236, 249 |
| AcvI | CACGTG | 1 cut(s) | 350 |
| AcyI | GRCGYC | 1 cut(s) | 54 |
| AfaI | GTAC | 3 cut(s) | 87, 377, 477 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 82 |
| AflIII | ACRYGT | 3 cut(s) | 269, 349, 401 |
| AgsI | TTSAA | 3 cut(s) | 65, 193, 446 |
| AjiI | CACGTC | 1 cut(s) | 404 |
| AjnI | CCWGG | 1 cut(s) | 311 |
| Alw21I | GWGCWC | 1 cut(s) | 10 |
| Alw26I | GTCTC | 2 cut(s) | 26, 278 |
| Alw44I | GTGCAC | 1 cut(s) | 6 |
| AlwI | GGATC | 2 cut(s) | 236, 249 |
| AoxI | GGCC | 1 cut(s) | 498 |
| ApaLI | GTGCAC | 1 cut(s) | 6 |
| ApeKI | GCWGC | 2 cut(s) | 323, 457 |
| AsuII | TTCGAA | 1 cut(s) | 367 |
| AxyI | CCTNAGG | 1 cut(s) | 246 |
| BaeGI | GKGCMC | 1 cut(s) | 10 |
| BamHI | GGATCC | 1 cut(s) | 241 |
| BbrPI | CACGTG | 1 cut(s) | 350 |
| Bbv12I | GWGCWC | 1 cut(s) | 10 |
| BbvI | GCAGC | 2 cut(s) | 310, 444 |
| BccI | CCATC | 2 cut(s) | 247, 413 |
| BciT130I | CCWGG | 1 cut(s) | 313 |
| BcoDI | GTCTC | 2 cut(s) | 26, 278 |
| BfmI | CTRYAG | 2 cut(s) | 139, 148 |
| BisI | GCNGC | 3 cut(s) | 324, 455, 458 |
| BlsI | GCNGC | 3 cut(s) | 325, 456, 459 |
| BmcAI | AGTACT | 1 cut(s) | 377 |
| Bme1390I | CCNGG | 1 cut(s) | 313 |
| BmgBI | CACGTC | 1 cut(s) | 404 |
| BmiI | GGNNCC | 2 cut(s) | 243, 310 |
| BmrFI | CCNGG | 1 cut(s) | 313 |
| BmsI | GCATC | 1 cut(s) | 266 |
| Bpu14I | TTCGAA | 1 cut(s) | 367 |
| BpuEI | CTTGAG | 2 cut(s) | 350, 410 |
| BsaAI | YACGTR | 1 cut(s) | 350 |
| BsaHI | GRCGYC | 1 cut(s) | 54 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 82 |
| Bse21I | CCTNAGG | 1 cut(s) | 246 |
| BseBI | CCWGG | 1 cut(s) | 313 |
| BseGI | GGATG | 2 cut(s) | 100, 257 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 82 |
| BseMII | CTCAG | 1 cut(s) | 237 |
| BseRI | GAGGAG | 1 cut(s) | 263 |
| BseSI | GKGCMC | 1 cut(s) | 10 |
| BseXI | GCAGC | 2 cut(s) | 310, 444 |
| BsgI | GTGCAG | 2 cut(s) | 294, 443 |
| BshFI | GGCC | 1 cut(s) | 500 |
| BsiHKAI | GWGCWC | 1 cut(s) | 10 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 82 |
| BsmAI | GTCTC | 2 cut(s) | 26, 278 |
| BsnI | GGCC | 1 cut(s) | 500 |
| Bsp119I | TTCGAA | 1 cut(s) | 367 |
| Bsp1286I | GDGCHC | 1 cut(s) | 10 |
| Bsp1407I | TGTACA | 1 cut(s) | 475 |
| Bsp143I | GATC | 1 cut(s) | 241 |
| BspACI | CCGC | 2 cut(s) | 80, 455 |
| BspANI | GGCC | 1 cut(s) | 500 |
| BspCNI | CTCAG | 1 cut(s) | 238 |
| BspLI | GGNNCC | 2 cut(s) | 243, 310 |
| BspMAI | CTGCAG | 1 cut(s) | 152 |
| BspPI | GGATC | 2 cut(s) | 236, 249 |
| BspT104I | TTCGAA | 1 cut(s) | 367 |
| BsrGI | TGTACA | 1 cut(s) | 475 |
| BssMI | GATC | 1 cut(s) | 241 |
| BssNI | GRCGYC | 1 cut(s) | 54 |
| Bst2UI | CCWGG | 1 cut(s) | 313 |
| Bst6I | CTCTTC | 1 cut(s) | 498 |
| BstACI | GRCGYC | 1 cut(s) | 54 |
| BstAUI | TGTACA | 1 cut(s) | 475 |
| BstBAI | YACGTR | 1 cut(s) | 350 |
| BstBI | TTCGAA | 1 cut(s) | 367 |
| BstDEI | CTNAG | 1 cut(s) | 246 |
| BstF5I | GGATG | 2 cut(s) | 100, 257 |
| BstKTI | GATC | 1 cut(s) | 244 |
| BstMAI | GTCTC | 2 cut(s) | 26, 278 |
| BstMBI | GATC | 1 cut(s) | 241 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 463 |
| BstNI | CCWGG | 1 cut(s) | 313 |
| BstNSI | RCATGY | 1 cut(s) | 273 |
| BstSCI | CCNGG | 1 cut(s) | 311 |
| BstSFI | CTRYAG | 2 cut(s) | 139, 148 |
| BstSLI | GKGCMC | 1 cut(s) | 10 |
| BstV1I | GCAGC | 2 cut(s) | 310, 444 |
| BstX2I | RGATCY | 1 cut(s) | 241 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 319 |
| BstYI | RGATCY | 1 cut(s) | 241 |
| Bsu36I | CCTNAGG | 1 cut(s) | 246 |
| BsuRI | GGCC | 1 cut(s) | 500 |
| BtgZI | GCGATG | 1 cut(s) | 486 |
| BtrI | CACGTC | 1 cut(s) | 404 |
| BtsCI | GGATG | 2 cut(s) | 100, 257 |
| CseI | GACGC | 1 cut(s) | 62 |
| Csp6I | GTAC | 3 cut(s) | 86, 376, 476 |
| CviAII | CATG | 1 cut(s) | 270 |
| CviJI | RGCY | 8 cut(s) | 118, 158, 311, 323, 346, 454, 466, 500 |
| CviKI_1 | RGCY | 8 cut(s) | 118, 158, 311, 323, 346, 454, 466, 500 |
| CviQI | GTAC | 3 cut(s) | 86, 376, 476 |
| DdeI | CTNAG | 1 cut(s) | 246 |
| DpnI | GATC | 1 cut(s) | 243 |
| DpnII | GATC | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 498 |
| EarI | CTCTTC | 1 cut(s) | 498 |
| Eco72I | CACGTG | 1 cut(s) | 350 |
| Eco81I | CCTNAGG | 1 cut(s) | 246 |
| EcoRII | CCWGG | 1 cut(s) | 311 |
| FaeI | CATG | 1 cut(s) | 273 |
| FatI | CATG | 1 cut(s) | 269 |
| FauI | CCCGC | 1 cut(s) | 73 |
| FauNDI | CATATG | 1 cut(s) | 318 |
| Fnu4HI | GCNGC | 3 cut(s) | 324, 455, 458 |
| FokI | GGATG | 2 cut(s) | 107, 244 |
| Fsp4HI | GCNGC | 3 cut(s) | 324, 455, 458 |
| GluI | GCNGC | 3 cut(s) | 324, 455, 458 |
| HaeIII | GGCC | 1 cut(s) | 500 |
| HgaI | GACGC | 1 cut(s) | 62 |
| Hin1I | GRCGYC | 1 cut(s) | 54 |
| Hin1II | CATG | 1 cut(s) | 273 |
| HincII | GTYRAC | 1 cut(s) | 52 |
| HindII | GTYRAC | 1 cut(s) | 52 |
| Hpy166II | GTNNAC | 3 cut(s) | 8, 52, 88 |
| Hpy188I | TCNGA | 3 cut(s) | 31, 226, 262 |
| Hpy188III | TCNNGA | 4 cut(s) | 245, 329, 389, 493 |
| Hpy8I | GTNNAC | 3 cut(s) | 8, 52, 88 |
| HpyAV | CCTTC | 1 cut(s) | 490 |
| HpyCH4IV | ACGT | 2 cut(s) | 349, 403 |
| HpyCH4V | TGCA | 8 cut(s) | 8, 23, 70, 150, 176, 214, 275, 460 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 463 |
| HpyF3I | CTNAG | 1 cut(s) | 246 |
| HpySE526I | ACGT | 2 cut(s) | 349, 403 |
| Hsp92I | GRCGYC | 1 cut(s) | 54 |
| Hsp92II | CATG | 1 cut(s) | 273 |
| Kzo9I | GATC | 1 cut(s) | 241 |
| LmnI | GCTCC | 1 cut(s) | 308 |
| LpnPI | CCDG | 8 cut(s) | 90, 144, 258, 298, 325, 429, 448, 506 |
| Lsp1109I | GCAGC | 2 cut(s) | 310, 444 |
| LweI | GCATC | 1 cut(s) | 266 |
| MaeII | ACGT | 2 cut(s) | 349, 403 |
| MaeIII | GTNAC | 1 cut(s) | 143 |
| MalI | GATC | 1 cut(s) | 243 |
| MboI | GATC | 1 cut(s) | 241 |
| MboII | GAAGA | 3 cut(s) | 140, 192, 515 |
| MfeI | CAATTG | 1 cut(s) | 65 |
| MflI | RGATCY | 1 cut(s) | 241 |
| MhlI | GDGCHC | 1 cut(s) | 10 |
| MluCI | AATT | 2 cut(s) | 65, 71 |
| MmeI | TCCRAC | 1 cut(s) | 285 |
| MnlI | CCTC | 6 cut(s) | 31, 108, 241, 300, 311, 499 |
| MseI | TTAA | 1 cut(s) | 520 |
| MslI | CAYNNNNRTG | 1 cut(s) | 93 |
| MspA1I | CMGCKG | 1 cut(s) | 457 |
| MspR9I | CCNGG | 1 cut(s) | 313 |
| MunI | CAATTG | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 313 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 463 |
| NdeI | CATATG | 1 cut(s) | 318 |
| NdeII | GATC | 1 cut(s) | 241 |
| NlaIII | CATG | 1 cut(s) | 273 |
| NlaIV | GGNNCC | 2 cut(s) | 243, 310 |
| NspI | RCATGY | 1 cut(s) | 273 |
| NspV | TTCGAA | 1 cut(s) | 367 |
| PciI | ACATGT | 1 cut(s) | 269 |
| PkrI | GCNGC | 3 cut(s) | 325, 456, 459 |
| PmaCI | CACGTG | 1 cut(s) | 350 |
| PmlI | CACGTG | 1 cut(s) | 350 |
| Ppu21I | YACGTR | 1 cut(s) | 350 |
| PscI | ACATGT | 1 cut(s) | 269 |
| Psp6I | CCWGG | 1 cut(s) | 311 |
| PspCI | CACGTG | 1 cut(s) | 350 |
| PspGI | CCWGG | 1 cut(s) | 311 |
| PspN4I | GGNNCC | 2 cut(s) | 243, 310 |
| PstI | CTGCAG | 1 cut(s) | 152 |
| PsuI | RGATCY | 1 cut(s) | 241 |
| RsaI | GTAC | 3 cut(s) | 87, 377, 477 |
| RsaNI | GTAC | 3 cut(s) | 86, 376, 476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 93 |
| SaqAI | TTAA | 1 cut(s) | 520 |
| SatI | GCNGC | 3 cut(s) | 324, 455, 458 |
| Sau3AI | GATC | 1 cut(s) | 241 |
| ScaI | AGTACT | 1 cut(s) | 377 |
| ScrFI | CCNGG | 1 cut(s) | 313 |
| SduI | GDGCHC | 1 cut(s) | 10 |
| SetI | ASST | 5 cut(s) | 42, 292, 352, 406, 418 |
| SfaNI | GCATC | 1 cut(s) | 266 |
| SfcI | CTRYAG | 2 cut(s) | 139, 148 |
| SfuI | TTCGAA | 1 cut(s) | 367 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 93 |
| SmlI | CTYRAG | 2 cut(s) | 329, 389 |
| SmoI | CTYRAG | 2 cut(s) | 329, 389 |
| Sse9I | AATT | 2 cut(s) | 65, 71 |
| SsiI | CCGC | 2 cut(s) | 80, 455 |
| StyD4I | CCNGG | 1 cut(s) | 311 |
| TaiI | ACGT | 2 cut(s) | 352, 406 |
| TaqI | TCGA | 1 cut(s) | 367 |
| TasI | AATT | 2 cut(s) | 65, 71 |
| TatI | WGTACW | 2 cut(s) | 375, 475 |
| TauI | GCSGC | 1 cut(s) | 457 |
| Tru1I | TTAA | 1 cut(s) | 520 |
| Tru9I | TTAA | 1 cut(s) | 520 |
| TseI | GCWGC | 2 cut(s) | 323, 457 |
| TspGWI | ACGGA | 1 cut(s) | 286 |
| VneI | GTGCAC | 1 cut(s) | 6 |
| XceI | RCATGY | 1 cut(s) | 273 |
| ZrmI | AGTACT | 1 cut(s) | 377 |