Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0087461 |
| rosa_laevigata | RLG00000015870 |
| rosa_multiflora | Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00153520 |
| rosa_rugosa | Rorug01G0475600 Rorug01G0475700 |
| rosa_samantha | Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100 |
| rosa_wichuraiana | Rw2G002310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 99 |
| AciI | CCGC | 3 cut(s) | 127, 194, 500 |
| AclWI | GGATC | 2 cut(s) | 269, 282 |
| AcvI | CACGTG | 1 cut(s) | 395 |
| AcyI | GRCGYC | 2 cut(s) | 168, 287 |
| AfaI | GTAC | 2 cut(s) | 201, 422 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 196 |
| AflII | CTTAAG | 1 cut(s) | 434 |
| AflIII | ACRYGT | 3 cut(s) | 314, 394, 446 |
| AgsI | TTSAA | 2 cut(s) | 179, 491 |
| AjiI | CACGTC | 1 cut(s) | 449 |
| AjnI | CCWGG | 1 cut(s) | 356 |
| AluBI | AGCT | 2 cut(s) | 580, 638 |
| AluI | AGCT | 2 cut(s) | 580, 638 |
| Alw21I | GWGCWC | 2 cut(s) | 124, 582 |
| Alw26I | GTCTC | 3 cut(s) | 140, 278, 323 |
| Alw44I | GTGCAC | 1 cut(s) | 120 |
| AlwI | GGATC | 2 cut(s) | 269, 282 |
| AoxI | GGCC | 1 cut(s) | 543 |
| ApaLI | GTGCAC | 1 cut(s) | 120 |
| ApeKI | GCWGC | 3 cut(s) | 74, 368, 502 |
| AseI | ATTAAT | 1 cut(s) | 564 |
| AsuII | TTCGAA | 1 cut(s) | 412 |
| AxyI | CCTNAGG | 2 cut(s) | 279, 291 |
| BaeGI | GKGCMC | 1 cut(s) | 124 |
| BamHI | GGATCC | 1 cut(s) | 274 |
| BanI | GGYRCC | 1 cut(s) | 99 |
| BanII | GRGCYC | 1 cut(s) | 582 |
| BbrPI | CACGTG | 1 cut(s) | 395 |
| BbsI | GAAGAC | 1 cut(s) | 594 |
| Bbv12I | GWGCWC | 2 cut(s) | 124, 582 |
| BbvI | GCAGC | 3 cut(s) | 61, 355, 489 |
| BccI | CCATC | 2 cut(s) | 292, 458 |
| BciT130I | CCWGG | 1 cut(s) | 358 |
| BcoDI | GTCTC | 3 cut(s) | 140, 278, 323 |
| BfaI | CTAG | 1 cut(s) | 639 |
| BfmI | CTRYAG | 2 cut(s) | 253, 262 |
| BfrI | CTTAAG | 1 cut(s) | 434 |
| BisI | GCNGC | 4 cut(s) | 75, 369, 500, 503 |
| BlsI | GCNGC | 4 cut(s) | 76, 370, 501, 504 |
| BmcAI | AGTACT | 1 cut(s) | 422 |
| Bme1390I | CCNGG | 1 cut(s) | 358 |
| BmgBI | CACGTC | 1 cut(s) | 449 |
| BmiI | GGNNCC | 3 cut(s) | 101, 276, 355 |
| BmrFI | CCNGG | 1 cut(s) | 358 |
| BmsI | GCATC | 3 cut(s) | 61, 311, 508 |
| BpiI | GAAGAC | 1 cut(s) | 594 |
| Bpu14I | TTCGAA | 1 cut(s) | 412 |
| BpuEI | CTTGAG | 1 cut(s) | 395 |
| BsaAI | YACGTR | 1 cut(s) | 395 |
| BsaHI | GRCGYC | 2 cut(s) | 168, 287 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 196 |
| Bse21I | CCTNAGG | 2 cut(s) | 279, 291 |
| Bse3DI | GCAATG | 1 cut(s) | 17 |
| BseBI | CCWGG | 1 cut(s) | 358 |
| BseGI | GGATG | 2 cut(s) | 214, 302 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseMI | GCAATG | 1 cut(s) | 17 |
| BseMII | CTCAG | 3 cut(s) | 75, 270, 282 |
| BseRI | GAGGAG | 2 cut(s) | 296, 308 |
| BseSI | GKGCMC | 1 cut(s) | 124 |
| BseXI | GCAGC | 3 cut(s) | 61, 355, 489 |
| BsgI | GTGCAG | 3 cut(s) | 339, 488, 639 |
| BshFI | GGCC | 1 cut(s) | 545 |
| BshNI | GGYRCC | 1 cut(s) | 99 |
| BsiHKAI | GWGCWC | 2 cut(s) | 124, 582 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BsmAI | GTCTC | 3 cut(s) | 140, 278, 323 |
| BsmBI | CGTCTC | 1 cut(s) | 278 |
| BsnI | GGCC | 1 cut(s) | 545 |
| Bsp119I | TTCGAA | 1 cut(s) | 412 |
| Bsp1286I | GDGCHC | 2 cut(s) | 124, 582 |
| Bsp143I | GATC | 1 cut(s) | 274 |
| BspACI | CCGC | 3 cut(s) | 127, 194, 500 |
| BspANI | GGCC | 1 cut(s) | 545 |
| BspCNI | CTCAG | 3 cut(s) | 74, 271, 283 |
| BspHI | TCATGA | 1 cut(s) | 40 |
| BspLI | GGNNCC | 3 cut(s) | 101, 276, 355 |
| BspMAI | CTGCAG | 1 cut(s) | 266 |
| BspPI | GGATC | 2 cut(s) | 269, 282 |
| BspT104I | TTCGAA | 1 cut(s) | 412 |
| BspT107I | GGYRCC | 1 cut(s) | 99 |
| BspTI | CTTAAG | 1 cut(s) | 434 |
| BsrDI | GCAATG | 1 cut(s) | 17 |
| BssMI | GATC | 1 cut(s) | 274 |
| BssNI | GRCGYC | 2 cut(s) | 168, 287 |
| Bst2UI | CCWGG | 1 cut(s) | 358 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| Bst6I | CTCTTC | 1 cut(s) | 543 |
| BstACI | GRCGYC | 2 cut(s) | 168, 287 |
| BstAFI | CTTAAG | 1 cut(s) | 434 |
| BstBAI | YACGTR | 1 cut(s) | 395 |
| BstBI | TTCGAA | 1 cut(s) | 412 |
| BstDEI | CTNAG | 4 cut(s) | 61, 279, 291, 632 |
| BstF5I | GGATG | 2 cut(s) | 214, 302 |
| BstKTI | GATC | 1 cut(s) | 277 |
| BstMAI | GTCTC | 3 cut(s) | 140, 278, 323 |
| BstMBI | GATC | 1 cut(s) | 274 |
| BstNI | CCWGG | 1 cut(s) | 358 |
| BstNSI | RCATGY | 1 cut(s) | 318 |
| BstSCI | CCNGG | 1 cut(s) | 356 |
| BstSFI | CTRYAG | 2 cut(s) | 253, 262 |
| BstSLI | GKGCMC | 1 cut(s) | 124 |
| BstV1I | GCAGC | 3 cut(s) | 61, 355, 489 |
| BstV2I | GAAGAC | 1 cut(s) | 594 |
| BstX2I | RGATCY | 1 cut(s) | 274 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 364 |
| BstYI | RGATCY | 1 cut(s) | 274 |
| Bsu36I | CCTNAGG | 2 cut(s) | 279, 291 |
| BsuRI | GGCC | 1 cut(s) | 545 |
| BtgZI | GCGATG | 1 cut(s) | 531 |
| BtrI | CACGTC | 1 cut(s) | 449 |
| BtsCI | GGATG | 2 cut(s) | 214, 302 |
| BtsI | GCAGTG | 1 cut(s) | 122 |
| BtsIMutI | CAGTG | 1 cut(s) | 122 |
| CciI | TCATGA | 1 cut(s) | 40 |
| CseI | GACGC | 2 cut(s) | 176, 295 |
| Csp6I | GTAC | 2 cut(s) | 200, 421 |
| CviAII | CATG | 2 cut(s) | 41, 315 |
| CviJI | RGCY | 8 cut(s) | 232, 356, 368, 391, 499, 545, 580, 638 |
| CviKI_1 | RGCY | 8 cut(s) | 232, 356, 368, 391, 499, 545, 580, 638 |
| CviQI | GTAC | 2 cut(s) | 200, 421 |
| DdeI | CTNAG | 4 cut(s) | 61, 279, 291, 632 |
| DpnI | GATC | 1 cut(s) | 276 |
| DpnII | GATC | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 543 |
| EarI | CTCTTC | 1 cut(s) | 543 |
| Ecl136II | GAGCTC | 1 cut(s) | 580 |
| Eco24I | GRGCYC | 1 cut(s) | 582 |
| Eco53kI | GAGCTC | 1 cut(s) | 580 |
| Eco72I | CACGTG | 1 cut(s) | 395 |
| Eco81I | CCTNAGG | 2 cut(s) | 279, 291 |
| EcoICRI | GAGCTC | 1 cut(s) | 580 |
| EcoRII | CCWGG | 1 cut(s) | 356 |
| EcoT38I | GRGCYC | 1 cut(s) | 582 |
| Esp3I | CGTCTC | 1 cut(s) | 278 |
| FaeI | CATG | 2 cut(s) | 44, 318 |
| FatI | CATG | 2 cut(s) | 40, 314 |
| FauI | CCCGC | 1 cut(s) | 120 |
| FauNDI | CATATG | 1 cut(s) | 363 |
| Fnu4HI | GCNGC | 4 cut(s) | 75, 369, 500, 503 |
| FokI | GGATG | 2 cut(s) | 221, 289 |
| FriOI | GRGCYC | 1 cut(s) | 582 |
| Fsp4HI | GCNGC | 4 cut(s) | 75, 369, 500, 503 |
| FspBI | CTAG | 1 cut(s) | 639 |
| GluI | GCNGC | 4 cut(s) | 75, 369, 500, 503 |
| HaeIII | GGCC | 1 cut(s) | 545 |
| HgaI | GACGC | 2 cut(s) | 176, 295 |
| Hin1I | GRCGYC | 2 cut(s) | 168, 287 |
| Hin1II | CATG | 2 cut(s) | 44, 318 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| Hpy166II | GTNNAC | 3 cut(s) | 122, 166, 202 |
| Hpy188I | TCNGA | 4 cut(s) | 64, 81, 307, 647 |
| Hpy188III | TCNNGA | 5 cut(s) | 7, 41, 278, 374, 538 |
| Hpy8I | GTNNAC | 3 cut(s) | 122, 166, 202 |
| HpyAV | CCTTC | 2 cut(s) | 113, 535 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4IV | ACGT | 2 cut(s) | 394, 448 |
| HpyCH4V | TGCA | 8 cut(s) | 122, 137, 184, 264, 320, 505, 521, 656 |
| HpyF3I | CTNAG | 4 cut(s) | 61, 279, 291, 632 |
| HpySE526I | ACGT | 2 cut(s) | 394, 448 |
| Hsp92I | GRCGYC | 2 cut(s) | 168, 287 |
| Hsp92II | CATG | 2 cut(s) | 44, 318 |
| Kzo9I | GATC | 1 cut(s) | 274 |
| LmnI | GCTCC | 3 cut(s) | 9, 353, 585 |
| LpnPI | CCDG | 9 cut(s) | 204, 291, 303, 343, 370, 474, 493, 551, 597 |
| Lsp1109I | GCAGC | 3 cut(s) | 61, 355, 489 |
| LweI | GCATC | 3 cut(s) | 61, 311, 508 |
| MaeI | CTAG | 1 cut(s) | 639 |
| MaeII | ACGT | 2 cut(s) | 394, 448 |
| MaeIII | GTNAC | 2 cut(s) | 257, 568 |
| MalI | GATC | 1 cut(s) | 276 |
| MboI | GATC | 1 cut(s) | 274 |
| MboII | GAAGA | 3 cut(s) | 254, 560, 599 |
| MfeI | CAATTG | 1 cut(s) | 179 |
| MflI | RGATCY | 1 cut(s) | 274 |
| MhlI | GDGCHC | 2 cut(s) | 124, 582 |
| MluCI | AATT | 5 cut(s) | 111, 140, 179, 185, 403 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MnlI | CCTC | 8 cut(s) | 145, 190, 222, 274, 286, 345, 356, 544 |
| MseI | TTAA | 3 cut(s) | 435, 564, 608 |
| MslI | CAYNNNNRTG | 2 cut(s) | 207, 661 |
| MspA1I | CMGCKG | 1 cut(s) | 502 |
| MspCI | CTTAAG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 1 cut(s) | 358 |
| MunI | CAATTG | 1 cut(s) | 179 |
| MvaI | CCWGG | 1 cut(s) | 358 |
| NdeI | CATATG | 1 cut(s) | 363 |
| NdeII | GATC | 1 cut(s) | 274 |
| NlaIII | CATG | 2 cut(s) | 44, 318 |
| NlaIV | GGNNCC | 3 cut(s) | 101, 276, 355 |
| NspI | RCATGY | 1 cut(s) | 318 |
| NspV | TTCGAA | 1 cut(s) | 412 |
| PagI | TCATGA | 1 cut(s) | 40 |
| PciI | ACATGT | 1 cut(s) | 314 |
| PkrI | GCNGC | 4 cut(s) | 76, 370, 501, 504 |
| PmaCI | CACGTG | 1 cut(s) | 395 |
| PmlI | CACGTG | 1 cut(s) | 395 |
| Ppu21I | YACGTR | 1 cut(s) | 395 |
| PscI | ACATGT | 1 cut(s) | 314 |
| PshBI | ATTAAT | 1 cut(s) | 564 |
| Psp124BI | GAGCTC | 1 cut(s) | 582 |
| Psp6I | CCWGG | 1 cut(s) | 356 |
| PspCI | CACGTG | 1 cut(s) | 395 |
| PspGI | CCWGG | 1 cut(s) | 356 |
| PspN4I | GGNNCC | 3 cut(s) | 101, 276, 355 |
| PstI | CTGCAG | 1 cut(s) | 266 |
| PsuI | RGATCY | 1 cut(s) | 274 |
| RsaI | GTAC | 2 cut(s) | 201, 422 |
| RsaNI | GTAC | 2 cut(s) | 200, 421 |
| RseI | CAYNNNNRTG | 2 cut(s) | 207, 661 |
| SacI | GAGCTC | 1 cut(s) | 582 |
| SaqAI | TTAA | 3 cut(s) | 435, 564, 608 |
| SatI | GCNGC | 4 cut(s) | 75, 369, 500, 503 |
| Sau3AI | GATC | 1 cut(s) | 274 |
| ScaI | AGTACT | 1 cut(s) | 422 |
| ScrFI | CCNGG | 1 cut(s) | 358 |
| SduI | GDGCHC | 2 cut(s) | 124, 582 |
| SetI | ASST | 9 cut(s) | 156, 201, 337, 397, 451, 463, 512, 582, 640 |
| SfaNI | GCATC | 3 cut(s) | 61, 311, 508 |
| SfcI | CTRYAG | 2 cut(s) | 253, 262 |
| SfuI | TTCGAA | 1 cut(s) | 412 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 207, 661 |
| SmlI | CTYRAG | 2 cut(s) | 374, 434 |
| SmoI | CTYRAG | 2 cut(s) | 374, 434 |
| Sse9I | AATT | 5 cut(s) | 111, 140, 179, 185, 403 |
| SsiI | CCGC | 3 cut(s) | 127, 194, 500 |
| SspMI | CTAG | 1 cut(s) | 639 |
| SstI | GAGCTC | 1 cut(s) | 582 |
| StyD4I | CCNGG | 1 cut(s) | 356 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaiI | ACGT | 2 cut(s) | 397, 451 |
| TaqI | TCGA | 1 cut(s) | 412 |
| TasI | AATT | 5 cut(s) | 111, 140, 179, 185, 403 |
| TatI | WGTACW | 1 cut(s) | 420 |
| TauI | GCSGC | 1 cut(s) | 502 |
| Tru1I | TTAA | 3 cut(s) | 435, 564, 608 |
| Tru9I | TTAA | 3 cut(s) | 435, 564, 608 |
| TscAI | CASTG | 1 cut(s) | 129 |
| TseI | GCWGC | 3 cut(s) | 74, 368, 502 |
| TspDTI | ATGAA | 2 cut(s) | 26, 57 |
| TspGWI | ACGGA | 1 cut(s) | 331 |
| TspRI | CASTG | 1 cut(s) | 129 |
| Vha464I | CTTAAG | 1 cut(s) | 434 |
| VneI | GTGCAC | 1 cut(s) | 120 |
| VspI | ATTAAT | 1 cut(s) | 564 |
| XceI | RCATGY | 1 cut(s) | 318 |
| XspI | CTAG | 1 cut(s) | 639 |
| ZrmI | AGTACT | 1 cut(s) | 422 |