Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002299.1

Orthogroup ID

OG0017781

Physical Location & Seq

Genomic Coordinates Forward (+)

32186 .. 33150

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002299.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgagtgcactacgggattatgcaaaatcagagacagaggttgatgatgttgacgccaagtttcaattgcaattccctgcgggggtacacggggatgagtttagaccatataagaggctcaaaagagaagaaccattctatagtaactgcagaaaggctggactatgccaagttgcaagaagatttggtttcaactttgagcagtttggactgcaagtgtcatcagacaacacaatgggggatcctgaggagatggcatccgacgactttacatgtgcagagtttgagacacctcaatccgtcctcataggagccaggcatatggctgctcttgagataagttgtgagccacgtgtgagatattatgttcgaagcaagtacttggatattcttgaattatcaacacgtccaaaaacacctgatggaaacgcaatagattatatttttcaaagaaagccgctgcacaggcttggcgatgcacaatggttgctcgtccagaaggccgaagaagataaatcttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

174

Amino Acids

20.09

Weight (kDa)

5.31

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017781)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087461
rosa_laevigata	RLG00000015870
rosa_multiflora	Rmu_sc0002299.1_g000007 Rmu_sc0006064.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153520
rosa_rugosa	Rorug01G0475600 Rorug01G0475700
rosa_samantha	Rh2AG029100 Rh2BG029300 Rh2CG029300 Rh2DG029100
rosa_wichuraiana	Rw2G002310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 458
AclWI	GGATC	2 cut(s)	236, 249
AcvI	CACGTG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	2 cut(s)	87, 380
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	3 cut(s)	272, 352, 404
AgsI	TTSAA	4 cut(s)	65, 193, 395, 449
AjiI	CACGTC	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	314
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	26, 281
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	2 cut(s)	236, 249
AoxI	GGCC	1 cut(s)	501
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	326, 460
AsuII	TTCGAA	1 cut(s)	370
AxyI	CCTNAGG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	241
BbrPI	CACGTG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	313, 447
BccI	CCATC	2 cut(s)	247, 416
BciT130I	CCWGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	26, 281
BfmI	CTRYAG	2 cut(s)	139, 148
BisI	GCNGC	3 cut(s)	327, 458, 461
BlsI	GCNGC	3 cut(s)	328, 459, 462
BmcAI	AGTACT	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	316
BmgBI	CACGTC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	243, 313
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	266, 466
Bpu14I	TTCGAA	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	100, 257
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	313, 447
BsgI	GTGCAG	2 cut(s)	297, 446
BshFI	GGCC	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	2 cut(s)	26, 281
BsnI	GGCC	1 cut(s)	503
Bsp119I	TTCGAA	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	2 cut(s)	80, 458
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	243, 313
BspMAI	CTGCAG	1 cut(s)	152
BspPI	GGATC	2 cut(s)	236, 249
BspT104I	TTCGAA	1 cut(s)	370
BssMI	GATC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	316
BstACI	GRCGYC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	100, 257
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	26, 281
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	2 cut(s)	139, 148
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	313, 447
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	100, 257
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	86, 379
CviAII	CATG	1 cut(s)	273
CviJI	RGCY	8 cut(s)	118, 158, 314, 326, 349, 457, 469, 503
CviKI_1	RGCY	8 cut(s)	118, 158, 314, 326, 349, 457, 469, 503
CviQI	GTAC	2 cut(s)	86, 379
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	276
FatI	CATG	1 cut(s)	272
FauI	CCCGC	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	327, 458, 461
FokI	GGATG	2 cut(s)	107, 244
Fsp4HI	GCNGC	3 cut(s)	327, 458, 461
GluI	GCNGC	3 cut(s)	327, 458, 461
HaeIII	GGCC	1 cut(s)	503
HgaI	GACGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	8, 52, 88
Hpy188I	TCNGA	3 cut(s)	31, 226, 262
Hpy188III	TCNNGA	4 cut(s)	245, 332, 392, 496
Hpy8I	GTNNAC	3 cut(s)	8, 52, 88
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	493
HpyCH4IV	ACGT	2 cut(s)	352, 406
HpyCH4V	TGCA	9 cut(s)	8, 23, 70, 150, 176, 214, 278, 463, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	352, 406
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	8 cut(s)	90, 144, 258, 301, 328, 432, 451, 509
Lsp1109I	GCAGC	2 cut(s)	313, 447
LweI	GCATC	2 cut(s)	266, 466
MaeII	ACGT	2 cut(s)	352, 406
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	4 cut(s)	140, 192, 518, 521
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	3 cut(s)	65, 71, 395
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	5 cut(s)	31, 108, 241, 303, 314
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	460
MspR9I	CCNGG	1 cut(s)	316
MunI	CAATTG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	466
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	276
NlaIV	GGNNCC	2 cut(s)	243, 313
NspI	RCATGY	1 cut(s)	276
NspV	TTCGAA	1 cut(s)	370
PciI	ACATGT	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	328, 459, 462
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	353
PscI	ACATGT	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	314
PspCI	CACGTG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	243, 313
PstI	CTGCAG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	2 cut(s)	87, 380
RsaNI	GTAC	2 cut(s)	86, 379
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	3 cut(s)	327, 458, 461
Sau3AI	GATC	1 cut(s)	241
ScaI	AGTACT	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	5 cut(s)	42, 295, 355, 409, 421
SfaNI	GCATC	2 cut(s)	266, 466
SfcI	CTRYAG	2 cut(s)	139, 148
SfuI	TTCGAA	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	65, 71, 395
SsiI	CCGC	2 cut(s)	80, 458
StyD4I	CCNGG	1 cut(s)	314
TaiI	ACGT	2 cut(s)	355, 409
TaqI	TCGA	1 cut(s)	370
TasI	AATT	3 cut(s)	65, 71, 395
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TseI	GCWGC	2 cut(s)	326, 460
TspGWI	ACGGA	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.