RchiOBHm_Chr2g0091401

Ninja-family protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
5060665 .. 5063942
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1491 bp
ATGGAGGATGAGAGTGGACTTGAGCTTAGCTTGGGTCTATCTTGTGGTGGGGGATCTTCTGTGAAGTCCAAGGGTAAAAATGGTGCCTCCTCAAATACTAGAGCGGAAGAAGGTGATAGAGACAACAAACTAGCAGATGATTTTAAAGACTTTCTTCATGGAGGGGCTCAGAAGCAAGAGTCAAGTAGTAGCTCTCAAAGAAGTGATTCAGTGAAACCTAAGGAAAACTTCTTTAATGACCTCTCCAAGGCCAATGGTGATGCAGACACATCAATGAACTTGAATGGGAGAGGAGTCTGGGCTGCAAAGAATAACAAGCCTGATGAAATAGAGGAAAGACAAACAGATGCTGGTAATAAACGCAAGACTTTGTTTGAAGAGATGAACCAACAGAAGAAGCATGAGAGAGAAGCTCATTACACTGATATGCATGACAAGACAAGAGCATCCCATATTTCCATAACAGAAGATGGCTCTACTGCTGAAAATGAAGACGTGGCAGATTCTGAAGTAGAGGGCTCAGCCTCAAGGCTGATATCCCAACATGACGATGGCTCTAAACGATTTGTTGGATCTGGTGACTCTTCTGATGCTCAAAAAGAGCTTCGCAGGTTTGCTGATTCAAGTAATGTGGATCCAAATGGGCAGAAGAGGTTTAATATTTCATCAGAAAATGATTACAAGGTTGGGAACATGGCGTATGGCAGTCCATTTTCTGTGCAATCAGTAAACATGATGAATATGCCCTACTCTCTCCCGAAGGATTCTAACCCTGTTGGTCCACCCAGCACATCAGGCCATCTGATTCCTGGAATGATGCAGGTGATGCCTATTGCAAATAGTGAACGGTCAGGGACTCAACCCATGAATCCTGGAAACTTGCCAGTTATGTTTGGCTATTCACCTGTCCAGCTTCCAGTATTGGATAAGGATAATTCTTGGGGTCCTCATACTCAGCAGTTTCACTATGCTGGCAGAAATCCACCAAACCCAGCTGTGATGCAAGTAATTTCGCATAATACATCTGAGGCTGCACAGTATGATGGGAGATTAGAACGGGCAAAAGGTGATGGAAAACAGCATGTCACTGAAGAGGGCTCCTCTTCTCAAGCAGAAGAAGACATGAAAGTAAGCAGCACGAACCCAAGGACAAAAGATGCACCTGATCGCTCAATGGCAGAGGATTTCTCTCTTGATTTTTCAGCTATAAAACCAGGAATTGCTGCGGACATAAAATTTGGGGGTTCTGGTTCCCGCCCAAATCTACCATGGGTTTCTACCAAAGGTCCAGGCCCCAATGGTAGGACGATTTCTGGCGTCACTTACAGATACAGCGCAAACCAAATCAAAATAGTTTGTGCTTGCCACGGTTCCCACATGTCCCCTGATGATTTTGTTCGGCATGCAAGTGAAGAGCCTTCTAATCCAGATAGCGGCACAGGTTTGGCGACAGTCCCAAATGGCAATCCTGCTGCCTCTGCTCAGAGCTGA

Protein Analysis

496

Amino Acids

53.41

Weight (kDa)

5.39

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010854)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 811
Acc36I ACCTGC 2 cut(s) 600, 811
AccB1I GGYRCC 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 104
AciI CCGC 4 cut(s) 104, 1226, 1255, 1434
AclWI GGATC 4 cut(s) 61, 580, 629, 642
AcsI RAATTY 1 cut(s) 1235
AcuI CTGAAG 2 cut(s) 528, 1110
AcyI GRCGYC 1 cut(s) 1317
AfiI CCNNNNNNNGG 3 cut(s) 247, 1302, 1433
AflIII ACRYGT 1 cut(s) 1377
AgsI TTSAA 3 cut(s) 283, 377, 624
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 4 cut(s) 808, 871, 1213, 1288
AluBI AGCT 9 cut(s) 25, 30, 192, 413, 604, 913, 995, 1205, 1488
AluI AGCT 9 cut(s) 25, 30, 192, 413, 604, 913, 995, 1205, 1488
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 4 cut(s) 61, 580, 629, 642
AlwNI CAGNNNCTG 2 cut(s) 350, 506
AoxI GGCC 3 cut(s) 249, 796, 1291
ApeKI GCWGC 5 cut(s) 302, 1031, 1134, 1223, 1472
ApoI RAATTY 1 cut(s) 1235
ArsI GACNNNNNNTTYG 2 cut(s) 1220, 1252
Asp700I GAANNNNTTC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 1337
AspS9I GGNCC 4 cut(s) 779, 944, 1286, 1292
AsuHPI GGTGA 6 cut(s) 125, 269, 590, 835, 894, 1079
AvaII GGWCC 3 cut(s) 779, 944, 1286
AxyI CCTNAGG 1 cut(s) 219
BamHI GGATCC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 3 cut(s) 169, 521, 1100
BbsI GAAGAC 2 cut(s) 498, 1125
BbvI GCAGC 5 cut(s) 289, 1018, 1146, 1210, 1459
BccI CCATC 5 cut(s) 464, 545, 807, 1037, 1064
BciT130I CCWGG 4 cut(s) 810, 873, 1215, 1290
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 2 cut(s) 99, 131
BfuAI ACCTGC 2 cut(s) 600, 811
BisI GCNGC 6 cut(s) 303, 1032, 1135, 1224, 1435, 1473
BlpI GCTNAGC 2 cut(s) 26, 520
BlsI GCNGC 6 cut(s) 304, 1033, 1136, 1225, 1436, 1474
Bme1390I CCNGG 4 cut(s) 810, 873, 1215, 1290
Bme18I GGWCC 3 cut(s) 779, 944, 1286
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 4 cut(s) 779, 944, 1286, 1292
BmiI GGNNCC 7 cut(s) 85, 636, 945, 1099, 1252, 1294, 1372
BmrFI CCNGG 4 cut(s) 810, 873, 1215, 1290
BmsI GCATC 8 cut(s) 250, 337, 455, 580, 807, 816, 990, 1147
BpiI GAAGAC 2 cut(s) 498, 1125
BplI GAGNNNNNCTC 6 cut(s) 397, 429, 1085, 1117, 1172, 1204
Bpu1102I GCTNAGC 2 cut(s) 26, 520
BpuEI CTTGAG 3 cut(s) 41, 511, 1092
BsaHI GRCGYC 1 cut(s) 1317
BsaJI CCNNGG 5 cut(s) 69, 246, 1145, 1268, 1366
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 1302, 1433
Bse1I ACTGG 2 cut(s) 884, 917
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 4 cut(s) 810, 873, 1215, 1290
BseDI CCNNGG 5 cut(s) 69, 246, 1145, 1268, 1366
BseGI GGATG 2 cut(s) 13, 446
BseLI CCNNNNNNNGG 3 cut(s) 247, 1302, 1433
BseMII CTCAG 4 cut(s) 182, 534, 968, 1017
BseNI ACTGG 2 cut(s) 884, 917
BseRI GAGGAG 3 cut(s) 79, 306, 1090
BseXI GCAGC 5 cut(s) 289, 1018, 1146, 1210, 1459
BseYI CCCAGC 2 cut(s) 785, 991
BsgI GTGCAG 1 cut(s) 1017
BshFI GGCC 3 cut(s) 251, 798, 1293
BshNI GGYRCC 1 cut(s) 83
BslFI GGGAC 3 cut(s) 868, 1366, 1439
BslI CCNNNNNNNGG 3 cut(s) 247, 1302, 1433
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 3 cut(s) 868, 1366, 1439
BsnI GGCC 3 cut(s) 251, 798, 1293
Bsp1286I GDGCHC 3 cut(s) 169, 521, 1100
Bsp143I GATC 4 cut(s) 53, 572, 634, 1165
Bsp1720I GCTNAGC 2 cut(s) 26, 520
Bsp19I CCATGG 1 cut(s) 1268
BspACI CCGC 4 cut(s) 104, 1226, 1255, 1434
BspANI GGCC 3 cut(s) 251, 798, 1293
BspCNI CTCAG 4 cut(s) 181, 533, 967, 1018
BspLI GGNNCC 7 cut(s) 85, 636, 945, 1099, 1252, 1294, 1372
BspMI ACCTGC 2 cut(s) 600, 811
BspPI GGATC 4 cut(s) 61, 580, 629, 642
BspQI GCTCTTC 1 cut(s) 1407
BspT107I GGYRCC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 104
BsrI ACTGG 2 cut(s) 884, 917
BssECI CCNNGG 5 cut(s) 69, 246, 1145, 1268, 1366
BssMI GATC 4 cut(s) 53, 572, 634, 1165
BssNI GRCGYC 1 cut(s) 1317
BssT1I CCWWGG 4 cut(s) 69, 246, 1145, 1268
Bst2UI CCWGG 4 cut(s) 810, 873, 1215, 1290
Bst4CI ACNGT 4 cut(s) 849, 1038, 1370, 1453
Bst6I CTCTTC 6 cut(s) 372, 589, 644, 1086, 1108, 1407
BstACI GRCGYC 1 cut(s) 1317
BstAPI GCANNNNNTGC 1 cut(s) 826
BstC8I GCNNGC 3 cut(s) 973, 1363, 1404
BstDEI CTNAG 7 cut(s) 26, 168, 219, 520, 954, 1026, 1482
BstDSI CCRYGG 2 cut(s) 1268, 1366
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 13, 446
BstHHI GCGC 1 cut(s) 1337
BstKTI GATC 4 cut(s) 56, 575, 637, 1168
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 4 cut(s) 53, 572, 634, 1165
BstMWI GCNNNNNNNGC 3 cut(s) 795, 826, 1478
BstNI CCWGG 4 cut(s) 810, 873, 1215, 1290
BstNSI RCATGY 3 cut(s) 1085, 1381, 1406
BstSCI CCNGG 4 cut(s) 808, 871, 1213, 1288
BstV1I GCAGC 5 cut(s) 289, 1018, 1146, 1210, 1459
BstV2I GAAGAC 2 cut(s) 498, 1125
BstX2I RGATCY 3 cut(s) 53, 572, 634
BstYI RGATCY 3 cut(s) 53, 572, 634
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 251, 798, 1293
BtgI CCRYGG 2 cut(s) 1268, 1366
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 2 cut(s) 13, 446
BtsIMutI CAGTG 3 cut(s) 216, 420, 1086
BveI ACCTGC 2 cut(s) 600, 811
Cac8I GCNNGC 3 cut(s) 973, 1363, 1404
CaiI CAGNNNCTG 2 cut(s) 350, 506
CfoI GCGC 1 cut(s) 1337
Cfr13I GGNCC 4 cut(s) 779, 944, 1286, 1292
CseI GACGC 1 cut(s) 1306
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
DdeI CTNAG 7 cut(s) 26, 168, 219, 520, 954, 1026, 1482
DpnI GATC 4 cut(s) 55, 574, 636, 1167
DpnII GATC 4 cut(s) 53, 572, 634, 1165
DraI TTTAAA 1 cut(s) 145
Eam1104I CTCTTC 6 cut(s) 372, 589, 644, 1086, 1108, 1407
EarI CTCTTC 6 cut(s) 372, 589, 644, 1086, 1108, 1407
Eco130I CCWWGG 4 cut(s) 69, 246, 1145, 1268
Eco24I GRGCYC 3 cut(s) 169, 521, 1100
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 3 cut(s) 779, 944, 1286
Eco57I CTGAAG 2 cut(s) 528, 1110
Eco81I CCTNAGG 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 2 cut(s) 944, 1292
EcoRII CCWGG 4 cut(s) 808, 871, 1213, 1288
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 4 cut(s) 69, 246, 1145, 1268
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 3 cut(s) 169, 521, 1100
ErhI CCWWGG 4 cut(s) 69, 246, 1145, 1268
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 212, 244
FaqI GGGAC 3 cut(s) 868, 1366, 1439
FauI CCCGC 1 cut(s) 1262
Fnu4HI GCNGC 6 cut(s) 303, 1032, 1135, 1224, 1435, 1473
FokI GGATG 2 cut(s) 20, 433
FriOI GRGCYC 3 cut(s) 169, 521, 1100
Fsp4HI GCNGC 6 cut(s) 303, 1032, 1135, 1224, 1435, 1473
FspBI CTAG 2 cut(s) 99, 131
GlaI GCGC 1 cut(s) 1336
GluI GCNGC 6 cut(s) 303, 1032, 1135, 1224, 1435, 1473
GsaI CCCAGC 2 cut(s) 789, 995
HaeIII GGCC 3 cut(s) 251, 798, 1293
HgaI GACGC 1 cut(s) 1306
HhaI GCGC 1 cut(s) 1337
Hin1I GRCGYC 1 cut(s) 1317
Hin6I GCGC 1 cut(s) 1335
HinP1I GCGC 1 cut(s) 1335
HphI GGTGA 6 cut(s) 125, 269, 590, 835, 894, 1079
Hpy166II GTNNAC 4 cut(s) 17, 730, 782, 845
Hpy188I TCNGA 7 cut(s) 171, 508, 589, 670, 804, 1027, 1485
Hpy188III TCNNGA 3 cut(s) 757, 1193, 1427
Hpy8I GTNNAC 4 cut(s) 17, 730, 782, 845
HpyAV CCTTC 3 cut(s) 104, 754, 1428
HpyCH4III ACNGT 4 cut(s) 849, 1038, 1370, 1453
HpyCH4IV ACGT 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 3 cut(s) 795, 826, 1478
HpyF3I CTNAG 7 cut(s) 26, 168, 219, 520, 954, 1026, 1482
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 1317
HspAI GCGC 1 cut(s) 1335
Kzo9I GATC 4 cut(s) 53, 572, 634, 1165
LguI GCTCTTC 1 cut(s) 1407
LmnI GCTCC 1 cut(s) 1103
Lsp1109I GCAGC 5 cut(s) 289, 1018, 1146, 1210, 1459
LweI GCATC 8 cut(s) 250, 337, 455, 580, 807, 816, 990, 1147
MaeI CTAG 2 cut(s) 99, 131
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 3 cut(s) 578, 1084, 1318
MalI GATC 4 cut(s) 55, 574, 636, 1167
MbiI CCGCTC 1 cut(s) 104
MboI GATC 4 cut(s) 53, 572, 634, 1165
MflI RGATCY 3 cut(s) 53, 572, 634
MhlI GDGCHC 3 cut(s) 169, 521, 1100
MluCI AATT 4 cut(s) 934, 1008, 1218, 1235
MlyI GAGTC 4 cut(s) 188, 303, 575, 850
MmeI TCCRAC 1 cut(s) 550
Mph1103I ATGCAT 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 3 cut(s) 144, 234, 657
MslI CAYNNNNRTG 4 cut(s) 272, 425, 549, 1407
MspA1I CMGCKG 1 cut(s) 995
MspR9I CCNGG 4 cut(s) 810, 873, 1215, 1290
MvaI CCWGG 4 cut(s) 810, 873, 1215, 1290
MwoI GCNNNNNNNGC 3 cut(s) 795, 826, 1478
NcoI CCATGG 1 cut(s) 1268
NdeII GATC 4 cut(s) 53, 572, 634, 1165
NlaIV GGNNCC 7 cut(s) 85, 636, 945, 1099, 1252, 1294, 1372
NmuCI GTSAC 3 cut(s) 578, 1084, 1318
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 3 cut(s) 1085, 1381, 1406
PaeI GCATGC 1 cut(s) 1406
PaqCI CACCTGC 1 cut(s) 811
PciI ACATGT 1 cut(s) 1377
PciSI GCTCTTC 1 cut(s) 1407
PdmI GAANNNNTTC 1 cut(s) 205
PfeI GAWTC 6 cut(s) 206, 503, 620, 764, 805, 868
PfoI TCCNGGA 2 cut(s) 808, 871
PkrI GCNGC 6 cut(s) 304, 1033, 1136, 1225, 1436, 1474
PleI GAGTC 4 cut(s) 187, 302, 575, 850
PpsI GAGTC 4 cut(s) 187, 302, 575, 850
PpuMI RGGWCCY 1 cut(s) 944
PscI ACATGT 1 cut(s) 1377
Psp5II RGGWCCY 1 cut(s) 944
Psp6I CCWGG 4 cut(s) 808, 871, 1213, 1288
PspFI CCCAGC 2 cut(s) 785, 991
PspGI CCWGG 4 cut(s) 808, 871, 1213, 1288
PspN4I GGNNCC 7 cut(s) 85, 636, 945, 1099, 1252, 1294, 1372
PspPI GGNCC 4 cut(s) 779, 944, 1286, 1292
PspPPI RGGWCCY 1 cut(s) 944
PstNI CAGNNNCTG 2 cut(s) 350, 506
PsuI RGATCY 3 cut(s) 53, 572, 634
PvuII CAGCTG 1 cut(s) 995
RseI CAYNNNNRTG 4 cut(s) 272, 425, 549, 1407
SapI GCTCTTC 1 cut(s) 1407
SaqAI TTAA 3 cut(s) 144, 234, 657
SatI GCNGC 6 cut(s) 303, 1032, 1135, 1224, 1435, 1473
Sau3AI GATC 4 cut(s) 53, 572, 634, 1165
Sau96I GGNCC 4 cut(s) 779, 944, 1286, 1292
SchI GAGTC 4 cut(s) 188, 303, 575, 850
ScrFI CCNGG 4 cut(s) 810, 873, 1215, 1290
SduI GDGCHC 3 cut(s) 169, 521, 1100
SfaNI GCATC 8 cut(s) 250, 337, 455, 580, 807, 816, 990, 1147
SinI GGWCC 3 cut(s) 779, 944, 1286
SmiMI CAYNNNNRTG 4 cut(s) 272, 425, 549, 1407
SmlI CTYRAG 3 cut(s) 20, 526, 1107
SmoI CTYRAG 3 cut(s) 20, 526, 1107
SphI GCATGC 1 cut(s) 1406
Sse9I AATT 4 cut(s) 934, 1008, 1218, 1235
SsiI CCGC 4 cut(s) 104, 1226, 1255, 1434
SspI AATATT 1 cut(s) 661
SspMI CTAG 2 cut(s) 99, 131
StyD4I CCNGG 4 cut(s) 808, 871, 1213, 1288
StyI CCWWGG 4 cut(s) 69, 246, 1145, 1268
TaaI ACNGT 4 cut(s) 849, 1038, 1370, 1453
TaiI ACGT 1 cut(s) 498
TasI AATT 4 cut(s) 934, 1008, 1218, 1235
TauI GCSGC 1 cut(s) 1437
TfiI GAWTC 6 cut(s) 206, 503, 620, 764, 805, 868
Tru1I TTAA 3 cut(s) 144, 234, 657
Tru9I TTAA 3 cut(s) 144, 234, 657
TscAI CASTG 3 cut(s) 216, 427, 1093
TseFI GTSAC 3 cut(s) 578, 1084, 1318
TseI GCWGC 5 cut(s) 302, 1031, 1134, 1223, 1472
Tsp45I GTSAC 3 cut(s) 578, 1084, 1318
TspDTI ATGAA 9 cut(s) 146, 290, 339, 398, 504, 654, 752, 881, 1139
TspRI CASTG 3 cut(s) 216, 427, 1093
VpaK11BI GGWCC 3 cut(s) 779, 944, 1286
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 1 cut(s) 1235
XceI RCATGY 3 cut(s) 1085, 1381, 1406
XcmI CCANNNNNNNNNTGG 3 cut(s) 548, 806, 1266
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 2 cut(s) 99, 131
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.