RchiOBHm_Chr2g0093321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012985
Physical Location & Seq
Reverse (-)
6623813 .. 6626463
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2079 bp
ATGACTACCGTGCGGGAATTGACCGATCTCTTCGCCCGGCTCGCTTCCCACTTAAACGACACGTCGTTGCCTCATCGCACTACCCAAGAAGAACAAGACGAAGCTGCTCTGGACCTCTCCATTTCCAATCTGAACCAATCCCTAAACCTCAGCGACAATTCTAGGGTTAGGGTTTTGGACGCCGTCCTATCTCTGATGTGCTTCAAAGCACCCCAGGTTTTTGATTCGGTGATTGAGTATTCGGTGAAGACAATTGTCACTGTTTTGTTGTCTTCGATTCGTTGCGACGTCTTTCGGTCTCCGAAAGATGAAGTCTTGATGATCGGGAGCTCTATTTCTCACCGAGATTGCGGTAATTTGATCGAATCGTGTGCTGAGATTCTTGGCAAATTGGAGGGACATGGTAAGCTTTCGGAGTCTTTACTGTGTGCCATTGTAAGAGTTGCAAGTTCGGCATCTCTGTACCGGCAGCTGTCAACGCCCATTCGTGATGTGAAATCAGTGGATGCGAGGAATGGCTTTTCAAAGCTGCTATGTCATTTGCCTAGAGCAACCTTGCTTGATAACAACAAAATATCTCTCAGATTGCTGGTCTGGTATCTTGATCCGCTAGTTTTGAAGCGCGATGTTTCAAACATCTTGCAAGAAGCCATGAGGAGGCCATTCCTTTGTTTGAGTAAGGAGTTCCATGAGAGTACTGAGTGGCGCTCCATCATCATATCCTTGGTACTTTCTCCCATTATGTTTGTTGAGGCTAGAGCTTTGTTACACAGATGGTTTTTAGTCACGGGTTTAGCTTCTGTGCTTGAGCTTCTAATTCAGTTGGTCTCAGTGACATTAGATGTGGTTTCGAGACCCATGTTCTGGGACATTTCAGCAGAATTGGGAGGAAGGTTACCATTTTCTAATGCTTATTTTCCTTACAACCACCAGTTGTTAAGGAACTTGGCTGGACCCCTCTCTTATGATGATTTCCTACAATTAGTGCGCCAGACAAGTGAACCAGTACCTTCTTCCAAAACTCAACTTTATCCATCTATTAAGTCACCTATACTGAAGGTTGCGACAGTCGATCACAAATCTATCTGGTCTCTGGCCATCAACTTCCCAGATTGGTTCTACTTTGCTTCTGCATTACTTTTCTCGGGGAAAGGTTCCCTCGACATTTGTCATAAACTATGCTTATTGGCGGCATCCAAAGTTGGGAAAACACATTATGAAGAACTACCTTCTATTGCTGCAGCAAGGTACATTGCCTGGATTTTGAGTCCTGTTAGTAAATCTCACCAGGATAGGCTGGCTGATTGTTTGATTAAACATTCAGAGTCCCCGGCTTTTAAACAGTCACATGACAAAGAAACATTCTACAAGAAGAAACTCAAGAAACTCAAACTCTGTGAAGAGGACCATACTTCCACAAGAGAGTATGATGATCAAAGCATTGCAGTCTGGCTCAATGGATTCAATAATATATGCACAATGTACTGTAGTGAAACTGTTAACAATTGTACATCATCTGAAACAAAACCATCCGGTGGTCTTAGTCTGCAGAAAAATGTCTTGTTCCGGAGAATCCCACTAGGTATCTTGCTTTGTTACCCCAGTCATCTCAATGAAGATGGATTAGAACTGCTGCTGCATTATGCCACCACAGGTAGAATTTTTCAGTCAAGGAAAACTAAGATTCCTGGATTGAAGCATGTAAAATGGAACTCCAGAGGGAATAAGAACCCAATTACATGGAGTGATGAATGTAATGAAAAAGAGGTTGTAGCAGGTGCCTTTCTTGTCTTCAGCTTAACCGATATTGTTGAAAGCATGTGTTCTTCACTGTTTGAGAATGAAGAGGCTAGCAGAGACTTTATCTGCTGGGTGAAAATGCAGGTCGGCAAATACTTGATAAAATGCATCAAGAGGTTCATTCAACTCAAAGTTGATGATGAAGATGTGGTGGTGATGGATCTCTGCCGTAGATTGGAGCAGTGGAGCCATCAAGGACGGGTAGTATTAGAGCTCCAGAATGATCTTGATAATGTCATTCAAGTCATTAATCAGAGATTTGCTTTTTGTGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

692

Amino Acids

78.4

Weight (kDa)

7.76

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60310 AT3G60310
fragaria_vesca FvH4_1g07420
malus_domestica MD02G1079300.v1.1
prunus_persica Prupe.7G209900_v2.0.a1
pyrus_communis pycom02g06310
rosa_chinensis RchiOBHm_Chr2g0093321
rosa_laevigata RLG00000016390
rosa_multiflora Rmu_sc0002089.1_g000004 Rmu_sc0005227.1_g000001 Rmu_ssc0000483.1_g000001
rosa_roxburghii Rroxscaffold_2G00148190
rosa_rugosa Rorug02G0034800
rosa_samantha Rh2AG080900 Rh2BG082000 Rh2CG084200 Rh2DG079900
rosa_wichuraiana Rw2G006590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1766
AatII GACGTC 1 cut(s) 291
Acc36I ACCTGC 2 cut(s) 1766, 1873
AccB1I GGYRCC 1 cut(s) 1778
AccB7I CCANNNNNTGG 2 cut(s) 864, 1535
AccII CGCG 1 cut(s) 624
AccIII TCCGGA 1 cut(s) 1566
AciI CCGC 4 cut(s) 13, 351, 608, 1190
AclWI GGATC 2 cut(s) 599, 1968
AcoI YGGCCR 1 cut(s) 1095
AcsI RAATTY 1 cut(s) 1659
AcuI CTGAAG 2 cut(s) 1076, 1777
AcyI GRCGYC 2 cut(s) 180, 288
AfaI GTAC 7 cut(s) 464, 697, 729, 1008, 1250, 1484, 1510
AfiI CCNNNNNNNGG 5 cut(s) 657, 864, 1203, 1535, 1975
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 9 cut(s) 205, 525, 619, 633, 1465, 1696, 1814, 1925, 2042
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 4 cut(s) 213, 1256, 1287, 1687
Alw21I GWGCWC 2 cut(s) 332, 2016
Alw26I GTCTC 5 cut(s) 303, 832, 847, 1095, 1851
AlwI GGATC 2 cut(s) 599, 1968
Ama87I CYCGRG 1 cut(s) 1144
Aor13HI TCCGGA 1 cut(s) 1566
AoxI GGCC 2 cut(s) 659, 1095
ApeKI GCWGC 7 cut(s) 104, 469, 529, 1238, 1241, 1633, 1636
ApoI RAATTY 1 cut(s) 1659
AseI ATTAAT 1 cut(s) 2049
AspLEI GCGC 3 cut(s) 624, 708, 990
AspS9I GGNCC 3 cut(s) 112, 953, 1405
AsuC2I CCSGG 2 cut(s) 37, 1331
AsuHPI GGTGA 7 cut(s) 241, 256, 332, 1038, 1277, 1885, 1966
AsuNHI GCTAGC 1 cut(s) 1850
AvaI CYCGRG 1 cut(s) 1144
AvaII GGWCC 3 cut(s) 112, 953, 1405
BalI TGGCCA 1 cut(s) 1097
BanI GGYRCC 1 cut(s) 1778
BanII GRGCYC 2 cut(s) 332, 2016
BbsI GAAGAC 3 cut(s) 254, 264, 1783
Bbv12I GWGCWC 2 cut(s) 332, 2016
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 7 cut(s) 91, 481, 516, 1225, 1253, 1620, 1623
BccI CCATC 8 cut(s) 719, 768, 1042, 1106, 1537, 1613, 1951, 1998
BceAI ACGGC 2 cut(s) 167, 1953
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 4 cut(s) 215, 1258, 1289, 1689
BclI TGATCA 1 cut(s) 1432
BcnI CCSGG 2 cut(s) 37, 1331
BcoDI GTCTC 5 cut(s) 303, 832, 847, 1095, 1851
BfaI CTAG 6 cut(s) 162, 546, 611, 756, 1580, 1851
BfmI CTRYAG 3 cut(s) 1239, 1486, 1547
BfoI RGCGCY 1 cut(s) 709
BfuAI ACCTGC 2 cut(s) 1766, 1873
BisI GCNGC 8 cut(s) 105, 470, 530, 1191, 1239, 1242, 1634, 1637
BlsI GCNGC 8 cut(s) 106, 471, 531, 1192, 1240, 1243, 1635, 1638
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 6 cut(s) 37, 215, 1258, 1289, 1331, 1689
Bme18I GGWCC 3 cut(s) 112, 953, 1405
BmeT110I CYCGRG 1 cut(s) 1144
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 3 cut(s) 112, 953, 1405
BmiI GGNNCC 4 cut(s) 955, 1156, 1780, 1988
BmrFI CCNGG 6 cut(s) 37, 215, 1258, 1289, 1331, 1689
BmrI ACTGGG 1 cut(s) 1596
BmsI GCATC 4 cut(s) 464, 496, 1202, 1917
BmtI GCTAGC 1 cut(s) 1854
BmuI ACTGGG 1 cut(s) 1596
BoxI GACNNNNGTC 2 cut(s) 254, 1167
BpiI GAAGAC 3 cut(s) 254, 264, 1783
BplI GAGNNNNNCTC 2 cut(s) 692, 724
BpmI CTGGAG 2 cut(s) 1699, 2000
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 827, 1364
BpuMI CCSGG 2 cut(s) 37, 1331
BsaHI GRCGYC 2 cut(s) 180, 288
BsaI GGTCTC 4 cut(s) 303, 832, 847, 1095
BsaJI CCNNGG 3 cut(s) 213, 723, 1329
BsaWI WCCGGW 2 cut(s) 1532, 1566
Bsc4I CCNNNNNNNGG 5 cut(s) 657, 864, 1203, 1535, 1975
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 931, 1004, 1602
Bse3DI GCAATG 2 cut(s) 1251, 1440
BseAI TCCGGA 1 cut(s) 1566
BseBI CCWGG 4 cut(s) 215, 1258, 1289, 1689
BseDI CCNNGG 3 cut(s) 213, 723, 1329
BseGI GGATG 3 cut(s) 511, 1193, 1529
BseLI CCNNNNNNNGG 5 cut(s) 657, 864, 1203, 1535, 1975
BseMI GCAATG 2 cut(s) 1251, 1440
BseMII CTCAG 5 cut(s) 163, 366, 595, 690, 843
BseNI ACTGG 3 cut(s) 931, 1004, 1602
BseRI GAGGAG 1 cut(s) 670
BseXI GCAGC 7 cut(s) 91, 481, 516, 1225, 1253, 1620, 1623
BseYI CCCAGC 1 cut(s) 1869
Bsh1236I CGCG 1 cut(s) 624
BshFI GGCC 2 cut(s) 661, 1097
BshNI GGYRCC 1 cut(s) 1778
BsiHKAI GWGCWC 2 cut(s) 332, 2016
BsiHKCI CYCGRG 1 cut(s) 1144
BsiSI CCGG 5 cut(s) 37, 466, 1331, 1533, 1567
BslFI GGGAC 3 cut(s) 411, 881, 1312
BslI CCNNNNNNNGG 5 cut(s) 657, 864, 1203, 1535, 1975
BsmAI GTCTC 5 cut(s) 303, 832, 847, 1095, 1851
BsmFI GGGAC 3 cut(s) 411, 881, 1312
BsnI GGCC 2 cut(s) 661, 1097
Bso31I GGTCTC 4 cut(s) 303, 832, 847, 1095
BsoBI CYCGRG 1 cut(s) 1144
Bsp1286I GDGCHC 2 cut(s) 332, 2016
Bsp13I TCCGGA 1 cut(s) 1566
Bsp1407I TGTACA 1 cut(s) 1508
Bsp143I GATC 8 cut(s) 25, 321, 360, 604, 1072, 1432, 1960, 2023
BspACI CCGC 4 cut(s) 13, 351, 608, 1190
BspANI GGCC 2 cut(s) 661, 1097
BspCNI CTCAG 5 cut(s) 162, 367, 594, 691, 842
BspEI TCCGGA 1 cut(s) 1566
BspFNI CGCG 1 cut(s) 624
BspHI TCATGA 1 cut(s) 2075
BspLI GGNNCC 4 cut(s) 955, 1156, 1780, 1988
BspMAI CTGCAG 2 cut(s) 1243, 1551
BspMI ACCTGC 2 cut(s) 1766, 1873
BspOI GCTAGC 1 cut(s) 1854
BspPI GGATC 2 cut(s) 599, 1968
BspT107I GGYRCC 1 cut(s) 1778
BspTNI GGTCTC 4 cut(s) 303, 832, 847, 1095
BsrDI GCAATG 2 cut(s) 1251, 1440
BsrFI RCCGGY 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 1508
BsrI ACTGG 3 cut(s) 931, 1004, 1602
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 213, 723, 1329
BssMI GATC 8 cut(s) 25, 321, 360, 604, 1072, 1432, 1960, 2023
BssNI GRCGYC 2 cut(s) 180, 288
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 4 cut(s) 215, 1258, 1289, 1689
Bst4CI ACNGT 8 cut(s) 10, 262, 426, 1069, 1344, 1487, 1498, 1833
Bst6I CTCTTC 3 cut(s) 35, 1395, 1839
BstACI GRCGYC 2 cut(s) 180, 288
BstAUI TGTACA 1 cut(s) 1508
BstC8I GCNNGC 3 cut(s) 42, 1299, 1852
BstDEI CTNAG 7 cut(s) 149, 375, 581, 699, 829, 1541, 1680
BstEII GGTNACC 1 cut(s) 894
BstF5I GGATG 3 cut(s) 511, 1193, 1529
BstFNI CGCG 1 cut(s) 624
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 3 cut(s) 624, 708, 990
BstKTI GATC 8 cut(s) 28, 324, 363, 607, 1075, 1435, 1963, 2026
BstMAI GTCTC 5 cut(s) 303, 832, 847, 1095, 1851
BstMBI GATC 8 cut(s) 25, 321, 360, 604, 1072, 1432, 1960, 2023
BstMWI GCNNNNNNNGC 4 cut(s) 41, 452, 478, 2069
BstNI CCWGG 4 cut(s) 215, 1258, 1289, 1689
BstNSI RCATGY 2 cut(s) 1703, 1822
BstPAI GACNNNNGTC 2 cut(s) 254, 1167
BstPI GGTNACC 1 cut(s) 894
BstSCI CCNGG 6 cut(s) 35, 213, 1256, 1287, 1329, 1687
BstSFI CTRYAG 3 cut(s) 1239, 1486, 1547
BstUI CGCG 1 cut(s) 624
BstV1I GCAGC 7 cut(s) 91, 481, 516, 1225, 1253, 1620, 1623
BstV2I GAAGAC 3 cut(s) 254, 264, 1783
BstX2I RGATCY 1 cut(s) 1960
BstXI CCANNNNNNTGG 1 cut(s) 1740
BstYI RGATCY 1 cut(s) 1960
BsuRI GGCC 2 cut(s) 661, 1097
BtgZI GCGATG 2 cut(s) 59, 639
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 3 cut(s) 511, 1193, 1529
BtsI GCAGTG 1 cut(s) 1988
BtsIMutI CAGTG 5 cut(s) 258, 507, 837, 1829, 1988
BveI ACCTGC 2 cut(s) 1766, 1873
Cac8I GCNNGC 3 cut(s) 42, 1299, 1852
CciI TCATGA 1 cut(s) 2075
CfoI GCGC 3 cut(s) 624, 708, 990
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 112, 953, 1405
CseI GACGC 1 cut(s) 188
Csp6I GTAC 7 cut(s) 463, 696, 728, 1007, 1249, 1483, 1509
CviAII CATG 9 cut(s) 401, 652, 689, 859, 1349, 1700, 1740, 1819, 2076
CviQI GTAC 7 cut(s) 463, 696, 728, 1007, 1249, 1483, 1509
DdeI CTNAG 7 cut(s) 149, 375, 581, 699, 829, 1541, 1680
DpnI GATC 8 cut(s) 27, 323, 362, 606, 1074, 1434, 1962, 2025
DpnII GATC 8 cut(s) 25, 321, 360, 604, 1072, 1432, 1960, 2023
DraI TTTAAA 1 cut(s) 1339
EaeI YGGCCR 1 cut(s) 1095
Eam1104I CTCTTC 3 cut(s) 35, 1395, 1839
EarI CTCTTC 3 cut(s) 35, 1395, 1839
Ecl136II GAGCTC 2 cut(s) 330, 2014
Eco130I CCWWGG 1 cut(s) 723
Eco24I GRGCYC 2 cut(s) 332, 2016
Eco31I GGTCTC 4 cut(s) 303, 832, 847, 1095
Eco47I GGWCC 3 cut(s) 112, 953, 1405
Eco53kI GAGCTC 2 cut(s) 330, 2014
Eco57I CTGAAG 2 cut(s) 1076, 1777
Eco88I CYCGRG 1 cut(s) 1144
Eco91I GGTNACC 1 cut(s) 894
EcoICRI GAGCTC 2 cut(s) 330, 2014
EcoO65I GGTNACC 1 cut(s) 894
EcoRII CCWGG 4 cut(s) 213, 1256, 1287, 1687
EcoT14I CCWWGG 1 cut(s) 723
EcoT22I ATGCAT 1 cut(s) 1910
EcoT38I GRGCYC 2 cut(s) 332, 2016
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 9 cut(s) 404, 655, 692, 862, 1352, 1703, 1743, 1822, 2079
FaqI GGGAC 3 cut(s) 411, 881, 1312
FatI CATG 9 cut(s) 400, 651, 688, 858, 1348, 1699, 1739, 1818, 2075
FauI CCCGC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 1432
Fnu4HI GCNGC 8 cut(s) 105, 470, 530, 1191, 1239, 1242, 1634, 1637
FokI GGATG 3 cut(s) 518, 1180, 1516
FriOI GRGCYC 2 cut(s) 332, 2016
Fsp4HI GCNGC 8 cut(s) 105, 470, 530, 1191, 1239, 1242, 1634, 1637
FspBI CTAG 6 cut(s) 162, 546, 611, 756, 1580, 1851
GlaI GCGC 3 cut(s) 623, 707, 989
GluI GCNGC 8 cut(s) 105, 470, 530, 1191, 1239, 1242, 1634, 1637
GsaI CCCAGC 1 cut(s) 1873
GsuI CTGGAG 2 cut(s) 1699, 2000
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 2 cut(s) 661, 1097
HapII CCGG 5 cut(s) 37, 466, 1331, 1533, 1567
HgaI GACGC 1 cut(s) 188
HhaI GCGC 3 cut(s) 624, 708, 990
Hin1I GRCGYC 2 cut(s) 180, 288
Hin1II CATG 9 cut(s) 404, 655, 692, 862, 1352, 1703, 1743, 1822, 2079
Hin6I GCGC 3 cut(s) 622, 706, 988
HinP1I GCGC 3 cut(s) 622, 706, 988
HincII GTYRAC 2 cut(s) 477, 1501
HindII GTYRAC 2 cut(s) 477, 1501
HindIII AAGCTT 1 cut(s) 407
HpaI GTTAAC 1 cut(s) 1501
HpaII CCGG 5 cut(s) 37, 466, 1331, 1533, 1567
HphI GGTGA 7 cut(s) 241, 256, 332, 1038, 1277, 1885, 1966
Hpy166II GTNNAC 3 cut(s) 477, 1001, 1501
Hpy188I TCNGA 8 cut(s) 132, 195, 303, 415, 584, 1324, 1519, 2055
Hpy8I GTNNAC 3 cut(s) 477, 1001, 1501
Hpy99I CGWCG 2 cut(s) 67, 290
HpyAV CCTTC 4 cut(s) 885, 1020, 1051, 1239
HpyCH4III ACNGT 8 cut(s) 10, 262, 426, 1069, 1344, 1487, 1498, 1833
HpyCH4IV ACGT 2 cut(s) 62, 288
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 452, 478, 2069
HpyF3I CTNAG 7 cut(s) 149, 375, 581, 699, 829, 1541, 1680
HpySE526I ACGT 2 cut(s) 62, 288
Hsp92I GRCGYC 2 cut(s) 180, 288
Hsp92II CATG 9 cut(s) 404, 655, 692, 862, 1352, 1703, 1743, 1822, 2079
HspAI GCGC 3 cut(s) 622, 706, 988
Kpn2I TCCGGA 1 cut(s) 1566
Ksp22I TGATCA 1 cut(s) 1432
KspAI GTTAAC 1 cut(s) 1501
Kzo9I GATC 8 cut(s) 25, 321, 360, 604, 1072, 1432, 1960, 2023
LmnI GCTCC 5 cut(s) 327, 713, 1978, 1986, 2019
Lsp1109I GCAGC 7 cut(s) 91, 481, 516, 1225, 1253, 1620, 1623
LweI GCATC 4 cut(s) 464, 496, 1202, 1917
MaeI CTAG 6 cut(s) 162, 546, 611, 756, 1580, 1851
MaeII ACGT 2 cut(s) 62, 288
MaeIII GTNAC 8 cut(s) 256, 765, 784, 832, 894, 1044, 1344, 1595
MalI GATC 8 cut(s) 27, 323, 362, 606, 1074, 1434, 1962, 2025
MboI GATC 8 cut(s) 25, 321, 360, 604, 1072, 1432, 1960, 2023
MfeI CAATTG 2 cut(s) 252, 1504
MflI RGATCY 1 cut(s) 1960
MhlI GDGCHC 2 cut(s) 332, 2016
MlsI TGGCCA 1 cut(s) 1097
MluNI TGGCCA 1 cut(s) 1097
MlyI GAGTC 3 cut(s) 425, 1276, 1334
Mox20I TGGCCA 1 cut(s) 1097
Mph1103I ATGCAT 1 cut(s) 1910
MroI TCCGGA 1 cut(s) 1566
MscI TGGCCA 1 cut(s) 1097
MseI TTAA 8 cut(s) 53, 938, 1041, 1314, 1338, 1500, 1799, 2049
MslI CAYNNNNRTG 1 cut(s) 1611
Msp20I TGGCCA 1 cut(s) 1097
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 5 cut(s) 37, 466, 1331, 1533, 1567
MspR9I CCNGG 6 cut(s) 37, 215, 1258, 1289, 1331, 1689
MunI CAATTG 2 cut(s) 252, 1504
MvaI CCWGG 4 cut(s) 215, 1258, 1289, 1689
MvnI CGCG 1 cut(s) 624
MwoI GCNNNNNNNGC 4 cut(s) 41, 452, 478, 2069
NciI CCSGG 2 cut(s) 37, 1331
NdeII GATC 8 cut(s) 25, 321, 360, 604, 1072, 1432, 1960, 2023
NheI GCTAGC 1 cut(s) 1850
NlaIII CATG 9 cut(s) 404, 655, 692, 862, 1352, 1703, 1743, 1822, 2079
NlaIV GGNNCC 4 cut(s) 955, 1156, 1780, 1988
NmuCI GTSAC 5 cut(s) 256, 784, 832, 1044, 1344
NsiI ATGCAT 1 cut(s) 1910
NspI RCATGY 2 cut(s) 1703, 1822
PagI TCATGA 1 cut(s) 2075
PaqCI CACCTGC 1 cut(s) 1766
PfeI GAWTC 7 cut(s) 224, 277, 365, 379, 1461, 1572, 1684
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 2 cut(s) 864, 1535
PfoI TCCNGGA 1 cut(s) 1687
PkrI GCNGC 8 cut(s) 106, 471, 531, 1192, 1240, 1243, 1635, 1638
PleI GAGTC 3 cut(s) 424, 1275, 1333
PpsI GAGTC 3 cut(s) 424, 1275, 1333
PshAI GACNNNNGTC 2 cut(s) 254, 1167
PshBI ATTAAT 1 cut(s) 2049
Psp124BI GAGCTC 2 cut(s) 332, 2016
Psp6I CCWGG 4 cut(s) 213, 1256, 1287, 1687
PspEI GGTNACC 1 cut(s) 894
PspFI CCCAGC 1 cut(s) 1869
PspGI CCWGG 4 cut(s) 213, 1256, 1287, 1687
PspN4I GGNNCC 4 cut(s) 955, 1156, 1780, 1988
PspPI GGNCC 3 cut(s) 112, 953, 1405
PstI CTGCAG 2 cut(s) 1243, 1551
PsuI RGATCY 1 cut(s) 1960
PsyI GACNNNGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 7 cut(s) 464, 697, 729, 1008, 1250, 1484, 1510
RsaNI GTAC 7 cut(s) 463, 696, 728, 1007, 1249, 1483, 1509
RseI CAYNNNNRTG 1 cut(s) 1611
SacI GAGCTC 2 cut(s) 332, 2016
SaqAI TTAA 8 cut(s) 53, 938, 1041, 1314, 1338, 1500, 1799, 2049
SatI GCNGC 8 cut(s) 105, 470, 530, 1191, 1239, 1242, 1634, 1637
Sau3AI GATC 8 cut(s) 25, 321, 360, 604, 1072, 1432, 1960, 2023
Sau96I GGNCC 3 cut(s) 112, 953, 1405
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 3 cut(s) 425, 1276, 1334
ScrFI CCNGG 6 cut(s) 37, 215, 1258, 1289, 1331, 1689
SduI GDGCHC 2 cut(s) 332, 2016
SfaNI GCATC 4 cut(s) 464, 496, 1202, 1917
SfcI CTRYAG 3 cut(s) 1239, 1486, 1547
SinI GGWCC 3 cut(s) 112, 953, 1405
SmiMI CAYNNNNRTG 1 cut(s) 1611
SmlI CTYRAG 2 cut(s) 806, 1379
SmoI CTYRAG 2 cut(s) 806, 1379
SsiI CCGC 4 cut(s) 13, 351, 608, 1190
SspMI CTAG 6 cut(s) 162, 546, 611, 756, 1580, 1851
SstI GAGCTC 2 cut(s) 332, 2016
StyD4I CCNGG 6 cut(s) 35, 213, 1256, 1287, 1329, 1687
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 8 cut(s) 10, 262, 426, 1069, 1344, 1487, 1498, 1833
TaiI ACGT 2 cut(s) 65, 291
TaqI TCGA 5 cut(s) 275, 363, 851, 1071, 1161
TaqII GACCGA 2 cut(s) 38, 285
TatI WGTACW 3 cut(s) 695, 1482, 1508
TauI GCSGC 1 cut(s) 1193
TfiI GAWTC 7 cut(s) 224, 277, 365, 379, 1461, 1572, 1684
Tru1I TTAA 8 cut(s) 53, 938, 1041, 1314, 1338, 1500, 1799, 2049
Tru9I TTAA 8 cut(s) 53, 938, 1041, 1314, 1338, 1500, 1799, 2049
TscAI CASTG 5 cut(s) 265, 507, 837, 1836, 1988
TseFI GTSAC 5 cut(s) 256, 784, 832, 1044, 1344
TseI GCWGC 7 cut(s) 104, 469, 529, 1238, 1241, 1633, 1636
Tsp45I GTSAC 5 cut(s) 256, 784, 832, 1044, 1344
TspDTI ATGAA 9 cut(s) 324, 1233, 1629, 1764, 1773, 1857, 1909, 1956, 2064
TspRI CASTG 5 cut(s) 265, 507, 837, 1836, 1988
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 2 cut(s) 864, 1535
VpaK11BI GGWCC 3 cut(s) 112, 953, 1405
VspI ATTAAT 1 cut(s) 2049
XapI RAATTY 1 cut(s) 1659
XceI RCATGY 2 cut(s) 1703, 1822
XspI CTAG 6 cut(s) 162, 546, 611, 756, 1580, 1851
ZraI GACGTC 1 cut(s) 289
ZrmI AGTACT 1 cut(s) 697
Zsp2I ATGCAT 1 cut(s) 1910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.