Rmu_sc0005227.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005227.1
OG0012985
Physical Location & Seq
Reverse (-)
2 .. 404
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005227.1_g000001.1.cds

Sequence Viewer

Length: 313 bp
atgaccaccgtgcgggaattgaccgatctcttcgcccggctcgcttcccactttaacgacacgtcgttgcctcatcgcactacccaagaagaacaagacgaagctgctctggacctctccatttccaatctgaaccaatccctaaacctcagcgacaattctagggttagggttttggacgccgtcctatctctgatgtgcttcaaagcaccccaggtttttgattcggtgatagagtattcggtgaagacaattgtcactgttttgctgtcttcgattcgttgcgacgtctttcggtctccgaaagatgaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.72

Weight (kDa)

4.89

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60310 AT3G60310
fragaria_vesca FvH4_1g07420
malus_domestica MD02G1079300.v1.1
prunus_persica Prupe.7G209900_v2.0.a1
pyrus_communis pycom02g06310
rosa_chinensis RchiOBHm_Chr2g0093321
rosa_laevigata RLG00000016390
rosa_multiflora Rmu_sc0002089.1_g000004 Rmu_sc0005227.1_g000001 Rmu_ssc0000483.1_g000001
rosa_roxburghii Rroxscaffold_2G00148190
rosa_rugosa Rorug02G0034800
rosa_samantha Rh2AG080900 Rh2BG082000 Rh2CG084200 Rh2DG079900
rosa_wichuraiana Rw2G006590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AciI CCGC 1 cut(s) 13
AcyI GRCGYC 2 cut(s) 180, 288
AfiI CCNNNNNNNGG 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 1 cut(s) 205
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 241, 256
AvaII GGWCC 1 cut(s) 112
BbsI GAAGAC 2 cut(s) 254, 264
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 215
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 37, 215
Bme18I GGWCC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 37, 215
BoxI GACNNNNGTC 1 cut(s) 254
BpiI GAAGAC 2 cut(s) 254, 264
Bpu10I CCTNAGC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 180, 288
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 2 cut(s) 180, 288
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 10, 262
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 2 cut(s) 180, 288
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 149
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 215
BstPAI GACNNNNGTC 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 35, 213
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 2 cut(s) 254, 264
BtgZI GCGATG 1 cut(s) 59
BtrI CACGTC 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 1 cut(s) 188
CviJI RGCY 2 cut(s) 40, 104
CviKI_1 RGCY 2 cut(s) 40, 104
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 213
FauI CCCGC 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 105
HapII CCGG 1 cut(s) 37
HgaI GACGC 1 cut(s) 188
Hin1I GRCGYC 2 cut(s) 180, 288
HinfI GANTC 2 cut(s) 224, 277
HpaII CCGG 1 cut(s) 37
HphI GGTGA 2 cut(s) 241, 256
Hpy188I TCNGA 3 cut(s) 132, 195, 303
Hpy188III TCNNGA 1 cut(s) 110
Hpy99I CGWCG 2 cut(s) 67, 290
HpyCH4III ACNGT 2 cut(s) 10, 262
HpyCH4IV ACGT 2 cut(s) 62, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 2 cut(s) 62, 288
Hsp92I GRCGYC 2 cut(s) 180, 288
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 50, 95, 200, 227
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 62, 288
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 4 cut(s) 22, 101, 259, 264
MfeI CAATTG 1 cut(s) 252
MluCI AATT 3 cut(s) 17, 157, 252
MnlI CCTC 3 cut(s) 81, 125, 158
MseI TTAA 1 cut(s) 54
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 37, 215
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 37
NdeII GATC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 224, 277
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspPI GGNCC 1 cut(s) 112
PsyI GACNNNGTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 37, 215
SetI ASST 6 cut(s) 65, 106, 117, 150, 219, 291
SinI GGWCC 1 cut(s) 112
Sse9I AATT 3 cut(s) 17, 157, 252
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 35, 213
TaaI ACNGT 2 cut(s) 10, 262
TaiI ACGT 2 cut(s) 65, 291
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 2 cut(s) 38, 285
TasI AATT 3 cut(s) 17, 157, 252
TfiI GAWTC 2 cut(s) 224, 277
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 256
TspRI CASTG 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 112
XspI CTAG 1 cut(s) 162
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.