Rh2CG084200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012985
Physical Location & Seq
Reverse (-)
6917789 .. 6920672
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG084200.1

Sequence Viewer

Length: 1095 bp
ATGACCACCGTGCGGGAATTGACCGATCTCTTCGCCCGGCTCGCTTCCCACTTAAACGACACGTCGTTGCCTCATCGCACCACCCAAGAAGAACAAGACGAAGCTGCTCTGGACCTCTCCATTTCCAATCTGAACCAATCCCTAAACCTCAGCGACAATTCTAGGGTTAGGGTTTTGGACGCCGTCCTATCTCTGATGTGCTTCAAAGCACCCCAGGTTTTTGATTCGGTGATTGAGTATTCGGTGAAGACAATTGTCACTGTTTTGTTGTCTTCGATTCGTTGCGACGTCTTTCGGTCTCCGAAAGATGAAGTCTTGATGATCGGGAGCTCTATTTCTCACCGAGATTGCGGTAATTTGATCAAATCGTGTGCTGAGATTCTTGGCAAATTGGAGGGACATGGTAAGCTTTCGGAGTCTTTACTGTGCGCCATTGTAAGAGTTGCAAGTTTGGCGTCTCTGTACCGGCAGCTGTCAACGCCCATTCGTGATGTGAAATCAGTGGATGCGAGGAATAGCTTGATTTCAAAGCTGCTATGTCATTTGCCTAGAGCAACCTTGCTTGATAACAACAAAATATCTCTCAGATTTCTGGTCTGGTATCTTGATCCGCTAGTTTTGAAGCGCGATGTTTCAAACATCTTGCAAGAAGCCATGAAGAGGCCATTCCTTTGTTTGAGTAAGGAGTTCCATGAGAGTACTGAGTGGCGCTCCATCATCATATCCTTGGTACTTTCTCCCATTATGTTTGTTGAGGCTAGAGCTTTGTTACACAGATGGTTTTTAGTCACGGGTTTAGCTTCTGTGCTTGAGCTTCTAATTCAGTTGGTCTCAGTGACATTAGATGTGGTTTCGAGACCCATGTTCTGGGACATTTCAGCAGAATTGGGAGGAAGGTTACCATTTTCTAATGCTTATTTTCCTTACAACCACCAGTTGTTAAGGAACTTGGCTGGACCCCTCTCTTATGATGATTTCCTACAATTAGTGCGCCAGACAAGTGAACCAGTACCTTCTTCCAAAACTCAACTTTATCCATCTATTAAGTCACCTATACTGAAGGTTGCGACAGTCGATCACAAATCTATCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

40.97

Weight (kDa)

8.13

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60310 AT3G60310
fragaria_vesca FvH4_1g07420
malus_domestica MD02G1079300.v1.1
prunus_persica Prupe.7G209900_v2.0.a1
pyrus_communis pycom02g06310
rosa_chinensis RchiOBHm_Chr2g0093321
rosa_laevigata RLG00000016390
rosa_multiflora Rmu_sc0002089.1_g000004 Rmu_sc0005227.1_g000001 Rmu_ssc0000483.1_g000001
rosa_roxburghii Rroxscaffold_2G00148190
rosa_rugosa Rorug02G0034800
rosa_samantha Rh2AG080900 Rh2BG082000 Rh2CG084200 Rh2DG079900
rosa_wichuraiana Rw2G006590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 867
AccII CGCG 1 cut(s) 627
AciI CCGC 3 cut(s) 13, 351, 611
AclWI GGATC 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 1079
AcyI GRCGYC 3 cut(s) 180, 288, 455
AfaI GTAC 4 cut(s) 464, 700, 732, 1011
AfiI CCNNNNNNNGG 3 cut(s) 12, 660, 867
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 4 cut(s) 205, 528, 622, 636
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 9 cut(s) 104, 330, 409, 472, 519, 532, 764, 800, 814
AluI AGCT 9 cut(s) 104, 330, 409, 472, 519, 532, 764, 800, 814
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 4 cut(s) 303, 462, 835, 850
AlwI GGATC 1 cut(s) 602
AoxI GGCC 1 cut(s) 662
ApeKI GCWGC 3 cut(s) 104, 469, 532
AspLEI GCGC 4 cut(s) 431, 627, 711, 993
AspS9I GGNCC 2 cut(s) 112, 956
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 4 cut(s) 241, 256, 332, 1041
AvaII GGWCC 2 cut(s) 112, 956
BanII GRGCYC 1 cut(s) 332
BbsI GAAGAC 2 cut(s) 254, 264
Bbv12I GWGCWC 1 cut(s) 332
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 3 cut(s) 91, 481, 519
BccI CCATC 3 cut(s) 722, 771, 1045
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 215
BclI TGATCA 1 cut(s) 360
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 4 cut(s) 303, 462, 835, 850
BfaI CTAG 4 cut(s) 162, 549, 614, 759
BfoI RGCGCY 1 cut(s) 712
BisI GCNGC 3 cut(s) 105, 470, 533
BlsI GCNGC 3 cut(s) 106, 471, 534
BmcAI AGTACT 1 cut(s) 700
Bme1390I CCNGG 2 cut(s) 37, 215
Bme18I GGWCC 2 cut(s) 112, 956
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 112, 956
BmiI GGNNCC 1 cut(s) 958
BmrFI CCNGG 2 cut(s) 37, 215
BmsI GCATC 1 cut(s) 496
BoxI GACNNNNGTC 1 cut(s) 254
BpiI GAAGAC 2 cut(s) 254, 264
BplI GAGNNNNNCTC 2 cut(s) 695, 727
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 37
BsaHI GRCGYC 3 cut(s) 180, 288, 455
BsaI GGTCTC 3 cut(s) 303, 835, 850
BsaJI CCNNGG 2 cut(s) 213, 726
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 660, 867
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 2 cut(s) 934, 1007
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 213, 726
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 3 cut(s) 12, 660, 867
BseMII CTCAG 5 cut(s) 163, 366, 598, 693, 846
BseNI ACTGG 2 cut(s) 934, 1007
BseXI GCAGC 3 cut(s) 91, 481, 519
Bsh1236I CGCG 1 cut(s) 627
BshFI GGCC 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 332
BsiSI CCGG 2 cut(s) 37, 466
BslFI GGGAC 2 cut(s) 411, 884
BslI CCNNNNNNNGG 3 cut(s) 12, 660, 867
BsmAI GTCTC 4 cut(s) 303, 462, 835, 850
BsmBI CGTCTC 1 cut(s) 462
BsmFI GGGAC 2 cut(s) 411, 884
BsnI GGCC 1 cut(s) 664
Bso31I GGTCTC 3 cut(s) 303, 835, 850
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 5 cut(s) 25, 321, 360, 607, 1075
BspACI CCGC 3 cut(s) 13, 351, 611
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 5 cut(s) 162, 367, 597, 694, 845
BspFNI CGCG 1 cut(s) 627
BspLI GGNNCC 1 cut(s) 958
BspPI GGATC 1 cut(s) 602
BspTNI GGTCTC 3 cut(s) 303, 835, 850
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 2 cut(s) 934, 1007
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 2 cut(s) 213, 726
BssMI GATC 5 cut(s) 25, 321, 360, 607, 1075
BssNI GRCGYC 3 cut(s) 180, 288, 455
BssT1I CCWWGG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 4 cut(s) 10, 262, 426, 1072
Bst6I CTCTTC 2 cut(s) 35, 653
BstACI GRCGYC 3 cut(s) 180, 288, 455
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 5 cut(s) 149, 375, 584, 702, 832
BstEII GGTNACC 1 cut(s) 897
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 1 cut(s) 627
BstH2I RGCGCY 1 cut(s) 712
BstHHI GCGC 4 cut(s) 431, 627, 711, 993
BstKTI GATC 5 cut(s) 28, 324, 363, 610, 1078
BstMAI GTCTC 4 cut(s) 303, 462, 835, 850
BstMBI GATC 5 cut(s) 25, 321, 360, 607, 1075
BstMWI GCNNNNNNNGC 3 cut(s) 41, 452, 478
BstNI CCWGG 1 cut(s) 215
BstPAI GACNNNNGTC 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 897
BstSCI CCNGG 2 cut(s) 35, 213
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 3 cut(s) 91, 481, 519
BstV2I GAAGAC 2 cut(s) 254, 264
BsuRI GGCC 1 cut(s) 664
BtgZI GCGATG 2 cut(s) 59, 642
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 511
BtsIMutI CAGTG 3 cut(s) 258, 507, 840
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 4 cut(s) 431, 627, 711, 993
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 112, 956
CseI GACGC 2 cut(s) 188, 444
Csp6I GTAC 4 cut(s) 463, 699, 731, 1010
CviAII CATG 4 cut(s) 401, 655, 692, 862
CviQI GTAC 4 cut(s) 463, 699, 731, 1010
DdeI CTNAG 5 cut(s) 149, 375, 584, 702, 832
DpnI GATC 5 cut(s) 27, 323, 362, 609, 1077
DpnII GATC 5 cut(s) 25, 321, 360, 607, 1075
Eam1104I CTCTTC 2 cut(s) 35, 653
EarI CTCTTC 2 cut(s) 35, 653
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 3 cut(s) 303, 835, 850
Eco47I GGWCC 2 cut(s) 112, 956
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 897
EcoICRI GAGCTC 1 cut(s) 330
EcoO65I GGTNACC 1 cut(s) 897
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 726
Esp3I CGTCTC 1 cut(s) 462
FaeI CATG 4 cut(s) 404, 658, 695, 865
FaiI YATR 9 cut(s) 402, 538, 656, 693, 722, 746, 863, 969, 1055
FaqI GGGAC 2 cut(s) 411, 884
FatI CATG 4 cut(s) 400, 654, 691, 861
FauI CCCGC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 3 cut(s) 105, 470, 533
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 105, 470, 533
FspBI CTAG 4 cut(s) 162, 549, 614, 759
GlaI GCGC 4 cut(s) 430, 626, 710, 992
GluI GCNGC 3 cut(s) 105, 470, 533
HaeII RGCGCY 1 cut(s) 712
HaeIII GGCC 1 cut(s) 664
HapII CCGG 2 cut(s) 37, 466
HgaI GACGC 2 cut(s) 188, 444
HhaI GCGC 4 cut(s) 431, 627, 711, 993
Hin1I GRCGYC 3 cut(s) 180, 288, 455
Hin1II CATG 4 cut(s) 404, 658, 695, 865
Hin6I GCGC 4 cut(s) 429, 625, 709, 991
HinP1I GCGC 4 cut(s) 429, 625, 709, 991
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 4 cut(s) 224, 277, 379, 416
HpaII CCGG 2 cut(s) 37, 466
HphI GGTGA 4 cut(s) 241, 256, 332, 1041
Hpy166II GTNNAC 2 cut(s) 477, 1004
Hpy188I TCNGA 5 cut(s) 132, 195, 303, 415, 587
Hpy188III TCNNGA 6 cut(s) 110, 316, 325, 488, 605, 855
Hpy8I GTNNAC 2 cut(s) 477, 1004
Hpy99I CGWCG 2 cut(s) 67, 290
HpyAV CCTTC 3 cut(s) 888, 1023, 1054
HpyCH4III ACNGT 4 cut(s) 10, 262, 426, 1072
HpyCH4IV ACGT 2 cut(s) 62, 288
HpyCH4V TGCA 2 cut(s) 446, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 452, 478
HpyF3I CTNAG 5 cut(s) 149, 375, 584, 702, 832
HpySE526I ACGT 2 cut(s) 62, 288
Hsp92I GRCGYC 3 cut(s) 180, 288, 455
Hsp92II CATG 4 cut(s) 404, 658, 695, 865
HspAI GCGC 4 cut(s) 429, 625, 709, 991
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 5 cut(s) 25, 321, 360, 607, 1075
LmnI GCTCC 2 cut(s) 327, 716
Lsp1109I GCAGC 3 cut(s) 91, 481, 519
LweI GCATC 1 cut(s) 496
MaeI CTAG 4 cut(s) 162, 549, 614, 759
MaeII ACGT 2 cut(s) 62, 288
MaeIII GTNAC 6 cut(s) 256, 768, 787, 835, 897, 1047
MalI GATC 5 cut(s) 27, 323, 362, 609, 1077
MboI GATC 5 cut(s) 25, 321, 360, 607, 1075
MboII GAAGA 6 cut(s) 22, 101, 259, 264, 670, 1008
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 8 cut(s) 17, 157, 252, 355, 389, 819, 884, 983
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 9 cut(s) 81, 125, 158, 388, 504, 654, 748, 884, 971
MseI TTAA 3 cut(s) 53, 941, 1044
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 2 cut(s) 37, 466
MspR9I CCNGG 2 cut(s) 37, 215
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 3 cut(s) 41, 452, 478
NciI CCSGG 1 cut(s) 37
NdeII GATC 5 cut(s) 25, 321, 360, 607, 1075
NlaIII CATG 4 cut(s) 404, 658, 695, 865
NlaIV GGNNCC 1 cut(s) 958
NmuCI GTSAC 4 cut(s) 256, 787, 835, 1047
PfeI GAWTC 3 cut(s) 224, 277, 379
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 867
PkrI GCNGC 3 cut(s) 106, 471, 534
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PshAI GACNNNNGTC 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 897
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 958
PspPI GGNCC 2 cut(s) 112, 956
PsyI GACNNNGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 4 cut(s) 464, 700, 732, 1011
RsaNI GTAC 4 cut(s) 463, 699, 731, 1010
SacI GAGCTC 1 cut(s) 332
SaqAI TTAA 3 cut(s) 53, 941, 1044
SatI GCNGC 3 cut(s) 105, 470, 533
Sau3AI GATC 5 cut(s) 25, 321, 360, 607, 1075
Sau96I GGNCC 2 cut(s) 112, 956
ScaI AGTACT 1 cut(s) 700
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 37, 215
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 1 cut(s) 496
SinI GGWCC 2 cut(s) 112, 956
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
Sse9I AATT 8 cut(s) 17, 157, 252, 355, 389, 819, 884, 983
SsiI CCGC 3 cut(s) 13, 351, 611
SspMI CTAG 4 cut(s) 162, 549, 614, 759
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 35, 213
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 4 cut(s) 10, 262, 426, 1072
TaiI ACGT 2 cut(s) 65, 291
TaqI TCGA 3 cut(s) 275, 854, 1074
TaqII GACCGA 2 cut(s) 38, 285
TasI AATT 8 cut(s) 17, 157, 252, 355, 389, 819, 884, 983
TatI WGTACW 1 cut(s) 698
TfiI GAWTC 3 cut(s) 224, 277, 379
Tru1I TTAA 3 cut(s) 53, 941, 1044
Tru9I TTAA 3 cut(s) 53, 941, 1044
TscAI CASTG 3 cut(s) 265, 507, 840
TseFI GTSAC 4 cut(s) 256, 787, 835, 1047
TseI GCWGC 3 cut(s) 104, 469, 532
Tsp45I GTSAC 4 cut(s) 256, 787, 835, 1047
TspDTI ATGAA 2 cut(s) 324, 671
TspRI CASTG 3 cut(s) 265, 507, 840
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 867
VpaK11BI GGWCC 2 cut(s) 112, 956
XspI CTAG 4 cut(s) 162, 549, 614, 759
ZraI GACGTC 1 cut(s) 289
ZrmI AGTACT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.