Rmu_sc0002089.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002089.1
OG0012985
Physical Location & Seq
Forward (+)
12123 .. 12482
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002089.1_g000004.1.cds

Sequence Viewer

Length: 360 bp
atgggccgtgggcttcttgtacatcggcccaaaaacgataaggttaaattgcctcaatttggcgcgaacccacacaaccaagtcgtcttcttaacgatgaccaccgtgcgggaattgaccgatctcttcgcccggctcgcttcccactttaacgacacgtcgttgcctcatcgcactacccaagaagaacaagacgaagctgctctggacctctccatttccaatctgaaccaatccctaaacctcagcgacaattctagggttagggttttggacgccgtcctatctctgatgtgcttcaaagcaccccaggtcagctctctcaaattattattgatccttcgtaaaccaaattgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

9.18

Isoelectric Point (pI)

25.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60310 AT3G60310
fragaria_vesca FvH4_1g07420
malus_domestica MD02G1079300.v1.1
prunus_persica Prupe.7G209900_v2.0.a1
pyrus_communis pycom02g06310
rosa_chinensis RchiOBHm_Chr2g0093321
rosa_laevigata RLG00000016390
rosa_multiflora Rmu_sc0002089.1_g000004 Rmu_sc0005227.1_g000001 Rmu_ssc0000483.1_g000001
rosa_roxburghii Rroxscaffold_2G00148190
rosa_rugosa Rorug02G0034800
rosa_samantha Rh2AG080900 Rh2BG082000 Rh2CG084200 Rh2DG079900
rosa_wichuraiana Rw2G006590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 65
AciI CCGC 1 cut(s) 109
AclWI GGATC 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 59, 108
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 1 cut(s) 301
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 2 cut(s) 200, 318
AluI AGCT 2 cut(s) 200, 318
AlwI GGATC 1 cut(s) 331
AoxI GGCC 2 cut(s) 4, 26
ApeKI GCWGC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 4, 27, 208
AsuC2I CCSGG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 79
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 311
BcnI CCSGG 1 cut(s) 133
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 133, 311
Bme18I GGWCC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 3 cut(s) 4, 27, 208
BmrFI CCNGG 2 cut(s) 133, 311
BpiI GAAGAC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 7, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 108
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 7, 309
BseLI CCNNNNNNNGG 2 cut(s) 59, 108
BseMII CTCAG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 6, 28
BsiSI CCGG 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 59, 108
BsnI GGCC 2 cut(s) 6, 28
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 2 cut(s) 121, 336
BspACI CCGC 1 cut(s) 109
BspANI GGCC 2 cut(s) 6, 28
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 1 cut(s) 65
BspPI GGATC 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 7, 309
BssMI GATC 2 cut(s) 121, 336
BssNI GRCGYC 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 7
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 124, 339
BstMBI GATC 2 cut(s) 121, 336
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 131, 309
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 79
BsuRI GGCC 2 cut(s) 6, 28
BtgI CCRYGG 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 155
BtrI CACGTC 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 4, 27, 208
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 20
CviJI RGCY 6 cut(s) 6, 13, 28, 136, 200, 318
CviKI_1 RGCY 6 cut(s) 6, 13, 28, 136, 200, 318
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 245
DpnI GATC 2 cut(s) 123, 338
DpnII GATC 2 cut(s) 121, 336
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 309
FauI CCCGC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 6, 28
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 276
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HpaII CCGG 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 2 cut(s) 228, 291
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 158
Hsp92I GRCGYC 1 cut(s) 276
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 121, 336
LpnPI CCDG 4 cut(s) 146, 191, 296, 323
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 158
MalI GATC 2 cut(s) 123, 338
MboI GATC 2 cut(s) 121, 336
MboII GAAGA 3 cut(s) 79, 118, 197
MluCI AATT 6 cut(s) 47, 56, 113, 253, 326, 352
MnlI CCTC 4 cut(s) 63, 177, 221, 254
MseI TTAA 3 cut(s) 45, 92, 150
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 2 cut(s) 133, 311
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 133
NdeII GATC 2 cut(s) 121, 336
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspPI GGNCC 3 cut(s) 4, 27, 208
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 45, 92, 150
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 121, 336
Sau96I GGNCC 3 cut(s) 4, 27, 208
ScrFI CCNGG 2 cut(s) 133, 311
SetI ASST 7 cut(s) 45, 161, 202, 213, 246, 315, 320
SinI GGWCC 1 cut(s) 208
Sse9I AATT 6 cut(s) 47, 56, 113, 253, 326, 352
SsiI CCGC 1 cut(s) 109
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 131, 309
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 161
TaqII GACCGA 1 cut(s) 134
TasI AATT 6 cut(s) 47, 56, 113, 253, 326, 352
TatI WGTACW 1 cut(s) 19
Tru1I TTAA 3 cut(s) 45, 92, 150
Tru9I TTAA 3 cut(s) 45, 92, 150
TseI GCWGC 1 cut(s) 200
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 208
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.