Rw2G006590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012985
Physical Location & Seq
Forward (+)
6358757 .. 6361404
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006590.1

Sequence Viewer

Length: 2082 bp
ATGACCACCGTGCGGGAATTGACCGATCTCTTCGCCCGGCTCGCTTCCCACTTTAACGACACGTCGTTGCCTCATCGCACTACCCAAGAAGAACAAGACGAAGCTGCTCTGGACCTCTCAATTTCCAATCTGAACCAATCCCTAAACCTCAGCGACAATTCTAGGGTTAGGGTTTTGGACGCCGTCCTATCTCTGATGTGCTTCAAGGCACCCCAGGTTTTTGATTCGGTGATTGAGTATTCGGTGAAGACAATTGTCACTGTTTTGTTGTCTTCGATTCGTTGCGACGTCTTTCGGTCTCCGAAAGATGAAGTCTTGATGATCGGGAGCTCTATTTCTCACCGAGATTGCGGTAATTTGATCGAATCGTGTGCTGAGATTCTTGGCAAATTGGAGGGACATGGTAAGCTTTCCGAGTCTTTACTGTGCGCCATTGTAAGAGTTGCAAGTTCGGCATCTCTGTACCGGCAGCTGTCAACGCCCATTCGTGATGTGAAATCAGTGGATGCGAGGAATAGCTTGATTTCAAAGCTGCTATGTCATTTGCCTAGAGCAACCTTGCTTGATAACAACAAAATATCTCTCAGATTGCTGGTCTGGTATCTTGATCCGCTAGTTTTGAAGCGTGATGTTTCAAACATCTTGCAAGAAGCCATGAGGAGGCCATTCCTTTGTTTGAGTAAGGAGTTCCATGAGAGTACTGAGTGGCGCTCCATCATCATATCCTTGGTACTTTCTCCCATTATGTTTGTTGAGGCTAGAGCTTTGTTACACAGATGGTTTTTAGTCACGGGTTTAGCTTCTGTGCTTGAGCTTCTAATTCAGTTGGTCTCAGTGACATTAGATGTGGTTTCGAGACCCATGTTCTGGGACATTTCTGCACAATTGGGAGGAAGGTTACCATTTTCTAATGCTTATTTTCCTTACAACCACCAGTTGTTAAGGAACTTGGCTGGACCCCTCTCTTATGATGATTTCCTACAATTAGTGCGCCAGACAAGTGAACCAGTACTTTCTTCCAAAACTCAACTTTATCCATCTATTAAGTCACCTATACTGAAGGTTGCGACAGTCGATCACAAATCTATCTGGTCTCTGGCCATCAACTTCCCAGATTGGTTCTACTTTGCTTCTGCATTGCTTTTCTCGGGGAAAGGTTCCCTTGACATTTGTCATAAACTATGCTTATTGGCGGCATCCAAAGTTGGGAAAACACATTATGAAGAACTACCTTCTATTGCTGCAGCAAGGTACATTGCCTGGATTTTGAGTCCTGTTAGTAAATCTCACCAGGATAGGCTGGCTGATTGTTTGATTAAACATTCAGAGTCCCCGGCTTTTAAACAGTCACATGACAAAGAAACAGTCTACAAGAAGAAACTCAAGAAACTCAAACTCTGTGAAGAGGACCATACTTCCACAAGAGAGTATGATGATCAAAGCATTGCAGTCTGGCTCAATGGATTCAATAATATATGCACAATGTACTGTAGTGAAACTGTTAACAATTGTACATCATCTGAAACAAAACCATCCGGTGGTCTTAGTCTGCAGAAAAATGTCTTGTTCCGGAGAATCCCACTAGGTATCTTGCTTTGTTACCCCAGTCATCTCAATGAAGATGGATTAGAACTGCTGCTGCATTATGCCACCACAGGTAGAATTTTTCAGTCAAGGGAAACTAAGATTCTCGGATTGAAGCATGTAAAATGGAACTCCAGAGGGAATAAGAACCCAATTACATGGAGTGATGAATGTAATGAAAAAGAGGTTGTAGCAGGTGCCTTTCTTGTCTTCAGCTTAACCGATATTGTTGAAAGCATGTGTTCTTCACTGTTTGAGAATGAAGAGGCTAGCAGAGACTTTATCTGCTGGGTGAAAATGCAGGTCGGCAAATACTTGATAAAATGCATCAAGAGGTTCATTCAACTCAAAGTTGATGATGAAGATGTGGTGGTGATGGATCTCTGCCGTAGATTGGAGCAGTGGAGCCATCAAGGACGGGTAGTATTAGAGCTCCAGAATGATCTTGATAATGTCATTCAAGTCATTAATCAGAGATTTGCTTTTTGTGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

693

Amino Acids

78.53

Weight (kDa)

7.51

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60310 AT3G60310
fragaria_vesca FvH4_1g07420
malus_domestica MD02G1079300.v1.1
prunus_persica Prupe.7G209900_v2.0.a1
pyrus_communis pycom02g06310
rosa_chinensis RchiOBHm_Chr2g0093321
rosa_laevigata RLG00000016390
rosa_multiflora Rmu_sc0002089.1_g000004 Rmu_sc0005227.1_g000001 Rmu_ssc0000483.1_g000001
rosa_roxburghii Rroxscaffold_2G00148190
rosa_rugosa Rorug02G0034800
rosa_samantha Rh2AG080900 Rh2BG082000 Rh2CG084200 Rh2DG079900
rosa_wichuraiana Rw2G006590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1769
AatII GACGTC 1 cut(s) 291
Acc36I ACCTGC 2 cut(s) 1769, 1876
AccB1I GGYRCC 2 cut(s) 208, 1781
AccB7I CCANNNNNTGG 2 cut(s) 867, 1538
AccI GTMKAC 1 cut(s) 1368
AccIII TCCGGA 1 cut(s) 1569
AciI CCGC 4 cut(s) 13, 351, 611, 1193
AclWI GGATC 2 cut(s) 602, 1971
AcoI YGGCCR 1 cut(s) 1098
AcsI RAATTY 1 cut(s) 1662
AcuI CTGAAG 2 cut(s) 1079, 1780
AcyI GRCGYC 2 cut(s) 180, 288
AfaI GTAC 7 cut(s) 464, 700, 732, 1011, 1253, 1487, 1513
AfiI CCNNNNNNNGG 6 cut(s) 12, 660, 867, 1206, 1538, 1978
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 9 cut(s) 205, 528, 622, 636, 1468, 1699, 1817, 1928, 2045
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 3 cut(s) 213, 1259, 1290
Alw21I GWGCWC 2 cut(s) 332, 2019
Alw26I GTCTC 5 cut(s) 303, 835, 850, 1098, 1854
AlwI GGATC 2 cut(s) 602, 1971
Ama87I CYCGRG 1 cut(s) 1147
Aor13HI TCCGGA 1 cut(s) 1569
AoxI GGCC 2 cut(s) 662, 1098
ApeKI GCWGC 7 cut(s) 104, 469, 532, 1241, 1244, 1636, 1639
ApoI RAATTY 1 cut(s) 1662
ArsI GACNNNNNNTTYG 2 cut(s) 1350, 1382
AseI ATTAAT 1 cut(s) 2052
AspLEI GCGC 3 cut(s) 431, 711, 993
AspS9I GGNCC 3 cut(s) 112, 956, 1408
AsuC2I CCSGG 2 cut(s) 37, 1334
AsuHPI GGTGA 7 cut(s) 241, 256, 332, 1041, 1280, 1888, 1969
AsuNHI GCTAGC 1 cut(s) 1853
AvaI CYCGRG 1 cut(s) 1147
AvaII GGWCC 3 cut(s) 112, 956, 1408
BalI TGGCCA 1 cut(s) 1100
BanI GGYRCC 2 cut(s) 208, 1781
BanII GRGCYC 2 cut(s) 332, 2019
BbsI GAAGAC 3 cut(s) 254, 264, 1786
Bbv12I GWGCWC 2 cut(s) 332, 2019
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 7 cut(s) 91, 481, 519, 1228, 1256, 1623, 1626
BccI CCATC 8 cut(s) 722, 771, 1045, 1109, 1540, 1616, 1954, 2001
BceAI ACGGC 2 cut(s) 167, 1956
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 3 cut(s) 215, 1261, 1292
BclI TGATCA 1 cut(s) 1435
BcnI CCSGG 2 cut(s) 37, 1334
BcoDI GTCTC 5 cut(s) 303, 835, 850, 1098, 1854
BfaI CTAG 6 cut(s) 162, 549, 614, 759, 1583, 1854
BfmI CTRYAG 3 cut(s) 1242, 1489, 1550
BfoI RGCGCY 1 cut(s) 712
BfuAI ACCTGC 2 cut(s) 1769, 1876
BisI GCNGC 8 cut(s) 105, 470, 533, 1194, 1242, 1245, 1637, 1640
BlsI GCNGC 8 cut(s) 106, 471, 534, 1195, 1243, 1246, 1638, 1641
BmcAI AGTACT 2 cut(s) 700, 1011
Bme1390I CCNGG 5 cut(s) 37, 215, 1261, 1292, 1334
Bme18I GGWCC 3 cut(s) 112, 956, 1408
BmeT110I CYCGRG 1 cut(s) 1147
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 3 cut(s) 112, 956, 1408
BmiI GGNNCC 5 cut(s) 210, 958, 1159, 1783, 1991
BmrFI CCNGG 5 cut(s) 37, 215, 1261, 1292, 1334
BmrI ACTGGG 1 cut(s) 1599
BmsI GCATC 4 cut(s) 464, 496, 1205, 1920
BmtI GCTAGC 1 cut(s) 1857
BmuI ACTGGG 1 cut(s) 1599
BoxI GACNNNNGTC 2 cut(s) 254, 1170
BpiI GAAGAC 3 cut(s) 254, 264, 1786
BplI GAGNNNNNCTC 2 cut(s) 695, 727
BpmI CTGGAG 2 cut(s) 1702, 2003
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 830, 1367
BpuMI CCSGG 2 cut(s) 37, 1334
BsaHI GRCGYC 2 cut(s) 180, 288
BsaI GGTCTC 4 cut(s) 303, 835, 850, 1098
BsaJI CCNNGG 3 cut(s) 213, 726, 1332
BsaWI WCCGGW 2 cut(s) 1535, 1569
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 660, 867, 1206, 1538, 1978
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 934, 1007, 1605
Bse3DI GCAATG 3 cut(s) 1136, 1254, 1443
BseAI TCCGGA 1 cut(s) 1569
BseBI CCWGG 3 cut(s) 215, 1261, 1292
BseDI CCNNGG 3 cut(s) 213, 726, 1332
BseGI GGATG 3 cut(s) 511, 1196, 1532
BseLI CCNNNNNNNGG 6 cut(s) 12, 660, 867, 1206, 1538, 1978
BseMI GCAATG 3 cut(s) 1136, 1254, 1443
BseMII CTCAG 5 cut(s) 163, 366, 598, 693, 846
BseNI ACTGG 3 cut(s) 934, 1007, 1605
BseRI GAGGAG 1 cut(s) 673
BseXI GCAGC 7 cut(s) 91, 481, 519, 1228, 1256, 1623, 1626
BseYI CCCAGC 1 cut(s) 1872
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 2 cut(s) 664, 1100
BshNI GGYRCC 2 cut(s) 208, 1781
BsiHKAI GWGCWC 2 cut(s) 332, 2019
BsiHKCI CYCGRG 1 cut(s) 1147
BsiSI CCGG 5 cut(s) 37, 466, 1334, 1536, 1570
BslFI GGGAC 3 cut(s) 411, 884, 1315
BslI CCNNNNNNNGG 6 cut(s) 12, 660, 867, 1206, 1538, 1978
BsmAI GTCTC 5 cut(s) 303, 835, 850, 1098, 1854
BsmFI GGGAC 3 cut(s) 411, 884, 1315
BsnI GGCC 2 cut(s) 664, 1100
Bso31I GGTCTC 4 cut(s) 303, 835, 850, 1098
BsoBI CYCGRG 1 cut(s) 1147
Bsp1286I GDGCHC 2 cut(s) 332, 2019
Bsp13I TCCGGA 1 cut(s) 1569
Bsp1407I TGTACA 1 cut(s) 1511
Bsp143I GATC 8 cut(s) 25, 321, 360, 607, 1075, 1435, 1963, 2026
BspACI CCGC 4 cut(s) 13, 351, 611, 1193
BspANI GGCC 2 cut(s) 664, 1100
BspCNI CTCAG 5 cut(s) 162, 367, 597, 694, 845
BspEI TCCGGA 1 cut(s) 1569
BspHI TCATGA 1 cut(s) 2078
BspLI GGNNCC 5 cut(s) 210, 958, 1159, 1783, 1991
BspMAI CTGCAG 2 cut(s) 1246, 1554
BspMI ACCTGC 2 cut(s) 1769, 1876
BspOI GCTAGC 1 cut(s) 1857
BspPI GGATC 2 cut(s) 602, 1971
BspT107I GGYRCC 2 cut(s) 208, 1781
BspTNI GGTCTC 4 cut(s) 303, 835, 850, 1098
BsrDI GCAATG 3 cut(s) 1136, 1254, 1443
BsrFI RCCGGY 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 1511
BsrI ACTGG 3 cut(s) 934, 1007, 1605
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 213, 726, 1332
BssMI GATC 8 cut(s) 25, 321, 360, 607, 1075, 1435, 1963, 2026
BssNI GRCGYC 2 cut(s) 180, 288
BssT1I CCWWGG 1 cut(s) 726
Bst2UI CCWGG 3 cut(s) 215, 1261, 1292
Bst4CI ACNGT 9 cut(s) 10, 262, 426, 1072, 1347, 1366, 1490, 1501, 1836
Bst6I CTCTTC 3 cut(s) 35, 1398, 1842
BstACI GRCGYC 2 cut(s) 180, 288
BstAUI TGTACA 1 cut(s) 1511
BstC8I GCNNGC 3 cut(s) 42, 1302, 1855
BstDEI CTNAG 7 cut(s) 149, 375, 584, 702, 832, 1544, 1683
BstEII GGTNACC 1 cut(s) 897
BstF5I GGATG 3 cut(s) 511, 1196, 1532
BstH2I RGCGCY 1 cut(s) 712
BstHHI GCGC 3 cut(s) 431, 711, 993
BstKTI GATC 8 cut(s) 28, 324, 363, 610, 1078, 1438, 1966, 2029
BstMAI GTCTC 5 cut(s) 303, 835, 850, 1098, 1854
BstMBI GATC 8 cut(s) 25, 321, 360, 607, 1075, 1435, 1963, 2026
BstMWI GCNNNNNNNGC 4 cut(s) 41, 452, 478, 2072
BstNI CCWGG 3 cut(s) 215, 1261, 1292
BstNSI RCATGY 2 cut(s) 1706, 1825
BstPAI GACNNNNGTC 2 cut(s) 254, 1170
BstPI GGTNACC 1 cut(s) 897
BstSCI CCNGG 5 cut(s) 35, 213, 1259, 1290, 1332
BstSFI CTRYAG 3 cut(s) 1242, 1489, 1550
BstV1I GCAGC 7 cut(s) 91, 481, 519, 1228, 1256, 1623, 1626
BstV2I GAAGAC 3 cut(s) 254, 264, 1786
BstX2I RGATCY 1 cut(s) 1963
BstXI CCANNNNNNTGG 1 cut(s) 1743
BstYI RGATCY 1 cut(s) 1963
BsuRI GGCC 2 cut(s) 664, 1100
BtgZI GCGATG 1 cut(s) 59
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 3 cut(s) 511, 1196, 1532
BtsI GCAGTG 1 cut(s) 1991
BtsIMutI CAGTG 5 cut(s) 258, 507, 840, 1832, 1991
BveI ACCTGC 2 cut(s) 1769, 1876
Cac8I GCNNGC 3 cut(s) 42, 1302, 1855
CciI TCATGA 1 cut(s) 2078
CfoI GCGC 3 cut(s) 431, 711, 993
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 112, 956, 1408
CseI GACGC 1 cut(s) 188
Csp6I GTAC 7 cut(s) 463, 699, 731, 1010, 1252, 1486, 1512
CviAII CATG 9 cut(s) 401, 655, 692, 862, 1352, 1703, 1743, 1822, 2079
CviQI GTAC 7 cut(s) 463, 699, 731, 1010, 1252, 1486, 1512
DdeI CTNAG 7 cut(s) 149, 375, 584, 702, 832, 1544, 1683
DpnI GATC 8 cut(s) 27, 323, 362, 609, 1077, 1437, 1965, 2028
DpnII GATC 8 cut(s) 25, 321, 360, 607, 1075, 1435, 1963, 2026
DraI TTTAAA 1 cut(s) 1342
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 3 cut(s) 35, 1398, 1842
EarI CTCTTC 3 cut(s) 35, 1398, 1842
Ecl136II GAGCTC 2 cut(s) 330, 2017
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 2 cut(s) 332, 2019
Eco31I GGTCTC 4 cut(s) 303, 835, 850, 1098
Eco47I GGWCC 3 cut(s) 112, 956, 1408
Eco53kI GAGCTC 2 cut(s) 330, 2017
Eco57I CTGAAG 2 cut(s) 1079, 1780
Eco88I CYCGRG 1 cut(s) 1147
Eco91I GGTNACC 1 cut(s) 897
EcoICRI GAGCTC 2 cut(s) 330, 2017
EcoO65I GGTNACC 1 cut(s) 897
EcoRII CCWGG 3 cut(s) 213, 1259, 1290
EcoT14I CCWWGG 1 cut(s) 726
EcoT22I ATGCAT 1 cut(s) 1913
EcoT38I GRGCYC 2 cut(s) 332, 2019
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 9 cut(s) 404, 658, 695, 865, 1355, 1706, 1746, 1825, 2082
FalI AAGNNNNNCTT 2 cut(s) 1146, 1178
FaqI GGGAC 3 cut(s) 411, 884, 1315
FatI CATG 9 cut(s) 400, 654, 691, 861, 1351, 1702, 1742, 1821, 2078
FauI CCCGC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 1435
FblI GTMKAC 1 cut(s) 1368
Fnu4HI GCNGC 8 cut(s) 105, 470, 533, 1194, 1242, 1245, 1637, 1640
FokI GGATG 3 cut(s) 518, 1183, 1519
FriOI GRGCYC 2 cut(s) 332, 2019
Fsp4HI GCNGC 8 cut(s) 105, 470, 533, 1194, 1242, 1245, 1637, 1640
FspBI CTAG 6 cut(s) 162, 549, 614, 759, 1583, 1854
GlaI GCGC 3 cut(s) 430, 710, 992
GluI GCNGC 8 cut(s) 105, 470, 533, 1194, 1242, 1245, 1637, 1640
GsaI CCCAGC 1 cut(s) 1876
GsuI CTGGAG 2 cut(s) 1702, 2003
HaeII RGCGCY 1 cut(s) 712
HaeIII GGCC 2 cut(s) 664, 1100
HapII CCGG 5 cut(s) 37, 466, 1334, 1536, 1570
HgaI GACGC 1 cut(s) 188
HhaI GCGC 3 cut(s) 431, 711, 993
Hin1I GRCGYC 2 cut(s) 180, 288
Hin1II CATG 9 cut(s) 404, 658, 695, 865, 1355, 1706, 1746, 1825, 2082
Hin6I GCGC 3 cut(s) 429, 709, 991
HinP1I GCGC 3 cut(s) 429, 709, 991
HincII GTYRAC 2 cut(s) 477, 1504
HindII GTYRAC 2 cut(s) 477, 1504
HindIII AAGCTT 1 cut(s) 407
HpaI GTTAAC 1 cut(s) 1504
HpaII CCGG 5 cut(s) 37, 466, 1334, 1536, 1570
HphI GGTGA 7 cut(s) 241, 256, 332, 1041, 1280, 1888, 1969
Hpy166II GTNNAC 4 cut(s) 477, 1004, 1369, 1504
Hpy188I TCNGA 9 cut(s) 132, 195, 303, 415, 587, 1327, 1522, 1694, 2058
Hpy8I GTNNAC 4 cut(s) 477, 1004, 1369, 1504
Hpy99I CGWCG 2 cut(s) 67, 290
HpyAV CCTTC 3 cut(s) 888, 1054, 1242
HpyCH4III ACNGT 9 cut(s) 10, 262, 426, 1072, 1347, 1366, 1490, 1501, 1836
HpyCH4IV ACGT 2 cut(s) 62, 288
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 452, 478, 2072
HpyF3I CTNAG 7 cut(s) 149, 375, 584, 702, 832, 1544, 1683
HpySE526I ACGT 2 cut(s) 62, 288
Hsp92I GRCGYC 2 cut(s) 180, 288
Hsp92II CATG 9 cut(s) 404, 658, 695, 865, 1355, 1706, 1746, 1825, 2082
HspAI GCGC 3 cut(s) 429, 709, 991
Kpn2I TCCGGA 1 cut(s) 1569
Ksp22I TGATCA 1 cut(s) 1435
KspAI GTTAAC 1 cut(s) 1504
Kzo9I GATC 8 cut(s) 25, 321, 360, 607, 1075, 1435, 1963, 2026
LmnI GCTCC 5 cut(s) 327, 716, 1981, 1989, 2022
Lsp1109I GCAGC 7 cut(s) 91, 481, 519, 1228, 1256, 1623, 1626
LweI GCATC 4 cut(s) 464, 496, 1205, 1920
MaeI CTAG 6 cut(s) 162, 549, 614, 759, 1583, 1854
MaeII ACGT 2 cut(s) 62, 288
MaeIII GTNAC 8 cut(s) 256, 768, 787, 835, 897, 1047, 1347, 1598
MalI GATC 8 cut(s) 27, 323, 362, 609, 1077, 1437, 1965, 2028
MboI GATC 8 cut(s) 25, 321, 360, 607, 1075, 1435, 1963, 2026
MfeI CAATTG 3 cut(s) 252, 884, 1507
MflI RGATCY 1 cut(s) 1963
MhlI GDGCHC 2 cut(s) 332, 2019
MlsI TGGCCA 1 cut(s) 1100
MluNI TGGCCA 1 cut(s) 1100
MlyI GAGTC 3 cut(s) 425, 1279, 1337
Mox20I TGGCCA 1 cut(s) 1100
Mph1103I ATGCAT 1 cut(s) 1913
MroI TCCGGA 1 cut(s) 1569
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 8 cut(s) 54, 941, 1044, 1317, 1341, 1503, 1802, 2052
MslI CAYNNNNRTG 1 cut(s) 1614
Msp20I TGGCCA 1 cut(s) 1100
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 5 cut(s) 37, 466, 1334, 1536, 1570
MspR9I CCNGG 5 cut(s) 37, 215, 1261, 1292, 1334
MunI CAATTG 3 cut(s) 252, 884, 1507
MvaI CCWGG 3 cut(s) 215, 1261, 1292
MwoI GCNNNNNNNGC 4 cut(s) 41, 452, 478, 2072
NciI CCSGG 2 cut(s) 37, 1334
NdeII GATC 8 cut(s) 25, 321, 360, 607, 1075, 1435, 1963, 2026
NheI GCTAGC 1 cut(s) 1853
NlaIII CATG 9 cut(s) 404, 658, 695, 865, 1355, 1706, 1746, 1825, 2082
NlaIV GGNNCC 5 cut(s) 210, 958, 1159, 1783, 1991
NmuCI GTSAC 5 cut(s) 256, 787, 835, 1047, 1347
NsiI ATGCAT 1 cut(s) 1913
NspI RCATGY 2 cut(s) 1706, 1825
PagI TCATGA 1 cut(s) 2078
PaqCI CACCTGC 1 cut(s) 1769
PfeI GAWTC 7 cut(s) 224, 277, 365, 379, 1464, 1575, 1687
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 2 cut(s) 867, 1538
PkrI GCNGC 8 cut(s) 106, 471, 534, 1195, 1243, 1246, 1638, 1641
PleI GAGTC 3 cut(s) 424, 1278, 1336
PpsI GAGTC 3 cut(s) 424, 1278, 1336
PshAI GACNNNNGTC 2 cut(s) 254, 1170
PshBI ATTAAT 1 cut(s) 2052
Psp124BI GAGCTC 2 cut(s) 332, 2019
Psp6I CCWGG 3 cut(s) 213, 1259, 1290
PspEI GGTNACC 1 cut(s) 897
PspFI CCCAGC 1 cut(s) 1872
PspGI CCWGG 3 cut(s) 213, 1259, 1290
PspN4I GGNNCC 5 cut(s) 210, 958, 1159, 1783, 1991
PspPI GGNCC 3 cut(s) 112, 956, 1408
PstI CTGCAG 2 cut(s) 1246, 1554
PsuI RGATCY 1 cut(s) 1963
PsyI GACNNNGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 7 cut(s) 464, 700, 732, 1011, 1253, 1487, 1513
RsaNI GTAC 7 cut(s) 463, 699, 731, 1010, 1252, 1486, 1512
RseI CAYNNNNRTG 1 cut(s) 1614
SacI GAGCTC 2 cut(s) 332, 2019
SaqAI TTAA 8 cut(s) 54, 941, 1044, 1317, 1341, 1503, 1802, 2052
SatI GCNGC 8 cut(s) 105, 470, 533, 1194, 1242, 1245, 1637, 1640
Sau3AI GATC 8 cut(s) 25, 321, 360, 607, 1075, 1435, 1963, 2026
Sau96I GGNCC 3 cut(s) 112, 956, 1408
ScaI AGTACT 2 cut(s) 700, 1011
SchI GAGTC 3 cut(s) 425, 1279, 1337
ScrFI CCNGG 5 cut(s) 37, 215, 1261, 1292, 1334
SduI GDGCHC 2 cut(s) 332, 2019
SfaNI GCATC 4 cut(s) 464, 496, 1205, 1920
SfcI CTRYAG 3 cut(s) 1242, 1489, 1550
SinI GGWCC 3 cut(s) 112, 956, 1408
SmiMI CAYNNNNRTG 1 cut(s) 1614
SmlI CTYRAG 2 cut(s) 809, 1382
SmoI CTYRAG 2 cut(s) 809, 1382
SsiI CCGC 4 cut(s) 13, 351, 611, 1193
SspMI CTAG 6 cut(s) 162, 549, 614, 759, 1583, 1854
SstI GAGCTC 2 cut(s) 332, 2019
StyD4I CCNGG 5 cut(s) 35, 213, 1259, 1290, 1332
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 9 cut(s) 10, 262, 426, 1072, 1347, 1366, 1490, 1501, 1836
TaiI ACGT 2 cut(s) 65, 291
TaqI TCGA 4 cut(s) 275, 363, 854, 1074
TaqII GACCGA 2 cut(s) 38, 285
TatI WGTACW 4 cut(s) 698, 1009, 1485, 1511
TauI GCSGC 1 cut(s) 1196
TfiI GAWTC 7 cut(s) 224, 277, 365, 379, 1464, 1575, 1687
Tru1I TTAA 8 cut(s) 54, 941, 1044, 1317, 1341, 1503, 1802, 2052
Tru9I TTAA 8 cut(s) 54, 941, 1044, 1317, 1341, 1503, 1802, 2052
TscAI CASTG 5 cut(s) 265, 507, 840, 1839, 1991
TseFI GTSAC 5 cut(s) 256, 787, 835, 1047, 1347
TseI GCWGC 7 cut(s) 104, 469, 532, 1241, 1244, 1636, 1639
Tsp45I GTSAC 5 cut(s) 256, 787, 835, 1047, 1347
TspDTI ATGAA 9 cut(s) 324, 1236, 1632, 1767, 1776, 1860, 1912, 1959, 2067
TspRI CASTG 5 cut(s) 265, 507, 840, 1839, 1991
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 2 cut(s) 867, 1538
VpaK11BI GGWCC 3 cut(s) 112, 956, 1408
VspI ATTAAT 1 cut(s) 2052
XapI RAATTY 1 cut(s) 1662
XceI RCATGY 2 cut(s) 1706, 1825
XmiI GTMKAC 1 cut(s) 1368
XspI CTAG 6 cut(s) 162, 549, 614, 759, 1583, 1854
ZraI GACGTC 1 cut(s) 289
ZrmI AGTACT 2 cut(s) 700, 1011
Zsp2I ATGCAT 1 cut(s) 1913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.