Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011509

Physical Location & Seq

Genomic Coordinates Reverse (-)

11774278 .. 11778591

Gene Structure 4314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGAGAATGAATATGAAGCGATCGAGGAAATCAATTTCTTGGGCTCCTGGAGTTAAACTTTGTCAGGTAAAGCTGTTCTCTTCTTTGGATTGTCCTGTGGAAGTTGGCATGAAATATCAAGGTCATTTTCAACCGAAGACATCAAGTATGTTGCATTCCAGTTCTTTTGAACCCAATGATAGCCCGCCTGGGTTTGAAGTAGGTATCTCTGTGAAGCAATCTAAGCTGCAACATTTCCCCATCCCTCAGATCAGGTGGCAATGCCCTTCCAAGCTTATTATGTGTGACGGCTGGCGTGTAGCAGCTGGTGAGGAAAGTGAAGAAGCCAAGGCTCAAAAACTAAGAGAGATGAGAGTGCTTGAGGCAGTATATCCTCGTTTTTCTGCAATTCCACCTAGCCCCTCTGTTTCTTTGGACGTAGAAAGTGAGCATTATGATCATAGCCTCACTCCTTGTGTTCCCATCAATCCAATTGAAGAAGAGTCCCAAGAAGATCAAGAAGATCTAACACCAGTAAACACCACTGTAGTCTCTCAGCTACCAGGTTTTCCCCAAGGTCTGTTGGCATCTGGAACGGCAAATGTTTCTCAGTCCAACCCTCCTGGTTTGGAGCAAGTACATGCACCAGGAAAGTTACCTAATCAAAGTGCTGATTTTACGGCCATTGCTTCAGCTGCATTAACTGCAATGAAGAATAGCAGCGAGAAGGAAAGTAGGATCGATACTGATTTGCTTATTAAGATTCTTAACGATCCGAAAATGCTCCAGAAATTGATTAATGTACATGGACCACAAGCCAATACAGGAATTGCATCAGTGAATACACATACTGCACCAAGTTCAAAGACGGTAACTCCCTATGTTCCCTCATCCCTTTCAAACTCTGATATGCAAAGGACTCCAGATGGTAACTTCCACATGCCAGGTAAAGTGGGTACTACTTTGAATGCAATCCCTCTTCAACCAGATACTGTTCAATTATCTGGGTTAAAGCGACCTGCACCATCACCACCATTACCTTCCTCGTCCAGCCCTCAAGCTGACCATGTTCTACTACCCAGACTGCCAAATCAGGCACAACCCCCATTAAGTGCATCGCCTGAACAGAACATGGTTCCCGTAGGATCTTTCCCAGCCCAGGAACCCGGAATTGTCAAGGACATGAACTACTATAAGAACCTCATTAGGCAACATGGAACAGAAAATAAAGAAATGCAGGACCCCATTTTGCTCAAAAATGGTAACAATCATAATCACTTGGTGGACTTGAAAATGTCTGTAAACTCTAATCCAGCAGAAATGAGGGCCAAGAAATCGAAACATTGCATGTTTTTCAAAACTGCCAAGGGATGTCGTAAGGGTGCTAATTGTGAATACCTCCATGACATGTCGTTAAATTGGCGAACTGGAATGGAGGCCCAAAGTGCCAAGAGAATGAAACTAAATGGGGTTAATAAGGGGAGGAGTATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

491

Amino Acids

53.86

Weight (kDa)

8.85

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990
malus_domestica	MD02G1134000.v1.1 MD15G1247000.v1.1
prunus_persica	Prupe.7G166800_v2.0.a1
pyrus_communis	pycom02g10560 pycom15g21720
rosa_chinensis	RchiOBHm_Chr2g0099611
rosa_laevigata	RLG00000016896
rosa_multiflora	Rmu_sc0005120.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142920
rosa_rugosa	Rorug02G0081500
rosa_samantha	Rh2AG131000 Rh2BG134200 Rh2CG135100 Rh2DG135600
rosa_wichuraiana	Rw2G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1006
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	3 cut(s)	725, 746, 1132
AcoI	YGGCCR	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	654
AdeI	CACNNNGTG	1 cut(s)	1261
AfaI	GTAC	3 cut(s)	618, 783, 937
AfiI	CCNNNNNNNGG	1 cut(s)	1138
AflIII	ACRYGT	1 cut(s)	1386
AjnI	CCWGG	7 cut(s)	46, 187, 541, 601, 625, 922, 1137
AluBI	AGCT	7 cut(s)	73, 226, 274, 305, 538, 674, 1040
AluI	AGCT	7 cut(s)	73, 226, 274, 305, 538, 674, 1040
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	3 cut(s)	725, 746, 1132
AlwNI	CAGNNNCTG	1 cut(s)	971
AoxI	GGCC	3 cut(s)	660, 1305, 1416
ApeKI	GCWGC	4 cut(s)	226, 302, 674, 699
AseI	ATTAAT	1 cut(s)	777
AspS9I	GGNCC	4 cut(s)	788, 1219, 1305, 1417
AsuC2I	CCSGG	1 cut(s)	1146
AsuHPI	GGTGA	2 cut(s)	320, 999
AvaII	GGWCC	2 cut(s)	788, 1219
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	4 cut(s)	213, 314, 661, 711
BccI	CCATC	4 cut(s)	248, 470, 899, 1012
BceAI	ACGGC	3 cut(s)	304, 591, 675
BciT130I	CCWGG	7 cut(s)	48, 189, 543, 603, 627, 924, 1139
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	1146
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	1006
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	4 cut(s)	227, 303, 675, 700
BlsI	GCNGC	4 cut(s)	228, 304, 676, 701
Bme1390I	CCNGG	8 cut(s)	48, 189, 543, 603, 627, 924, 1139, 1146
Bme18I	GGWCC	2 cut(s)	788, 1219
BmgT120I	GGNCC	4 cut(s)	788, 1219, 1305, 1417
BmiI	GGNNCC	4 cut(s)	45, 1116, 1143, 1221
BmrFI	CCNGG	8 cut(s)	48, 189, 543, 603, 627, 924, 1139, 1146
BmsI	GCATC	3 cut(s)	575, 821, 1103
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	3 cut(s)	69, 749, 885
BpuEI	CTTGAG	2 cut(s)	380, 1020
BpuMI	CCSGG	1 cut(s)	1146
Bsa29I	ATCGAT	1 cut(s)	720
BsaJI	CCNNGG	5 cut(s)	188, 327, 553, 1137, 1344
BsaXI	ACNNNNNCTCC	2 cut(s)	838, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	1138
Bse1I	ACTGG	3 cut(s)	159, 512, 1411
Bse3DI	GCAATG	4 cut(s)	266, 663, 693, 1321
BseBI	CCWGG	7 cut(s)	48, 189, 543, 603, 627, 924, 1139
BseCI	ATCGAT	1 cut(s)	720
BseDI	CCNNGG	5 cut(s)	188, 327, 553, 1137, 1344
BseGI	GGATG	3 cut(s)	240, 869, 1355
BseLI	CCNNNNNNNGG	1 cut(s)	1138
BseMI	GCAATG	4 cut(s)	266, 663, 693, 1321
BseMII	CTCAG	3 cut(s)	260, 548, 602
BseNI	ACTGG	3 cut(s)	159, 512, 1411
BseXI	GCAGC	4 cut(s)	213, 314, 661, 711
BseYI	CCCAGC	1 cut(s)	1132
BsgI	GTGCAG	2 cut(s)	816, 984
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	3 cut(s)	662, 1307, 1418
BshVI	ATCGAT	1 cut(s)	720
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	1146
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	1138
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	2 cut(s)	154, 952
BsnI	GGCC	3 cut(s)	662, 1307, 1418
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	8 cut(s)	20, 249, 436, 493, 502, 717, 751, 1124
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	3 cut(s)	662, 1307, 1418
BspCNI	CTCAG	3 cut(s)	259, 547, 601
BspDI	ATCGAT	1 cut(s)	720
BspLI	GGNNCC	4 cut(s)	45, 1116, 1143, 1221
BspMI	ACCTGC	1 cut(s)	1006
BspPI	GGATC	3 cut(s)	725, 746, 1132
BsrDI	GCAATG	4 cut(s)	266, 663, 693, 1321
BsrGI	TGTACA	1 cut(s)	781
BsrI	ACTGG	3 cut(s)	159, 512, 1411
BssECI	CCNNGG	5 cut(s)	188, 327, 553, 1137, 1344
BssMI	GATC	8 cut(s)	20, 249, 436, 493, 502, 717, 751, 1124
BssT1I	CCWWGG	3 cut(s)	327, 553, 1344
Bst2UI	CCWGG	7 cut(s)	48, 189, 543, 603, 627, 924, 1139
Bst4CI	ACNGT	3 cut(s)	526, 850, 973
Bst6I	CTCTTC	3 cut(s)	85, 474, 963
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	781
BstC8I	GCNNGC	2 cut(s)	185, 293
BstDEI	CTNAG	5 cut(s)	222, 246, 341, 534, 588
BstF5I	GGATG	3 cut(s)	240, 869, 1355
BstKTI	GATC	8 cut(s)	23, 252, 439, 496, 505, 720, 754, 1127
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	8 cut(s)	20, 249, 436, 493, 502, 717, 751, 1124
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 674, 683, 1424
BstNI	CCWGG	7 cut(s)	48, 189, 543, 603, 627, 924, 1139
BstNSI	RCATGY	4 cut(s)	623, 922, 1330, 1390
BstSCI	CCNGG	8 cut(s)	46, 187, 541, 601, 625, 922, 1137, 1144
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	4 cut(s)	213, 314, 661, 711
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	502, 1124
BstYI	RGATCY	2 cut(s)	502, 1124
Bsu15I	ATCGAT	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	662, 1307, 1418
BsuTUI	ATCGAT	1 cut(s)	720
BtgZI	GCGATG	1 cut(s)	1080
BtsCI	GGATG	3 cut(s)	240, 869, 1355
BtsIMutI	CAGTG	2 cut(s)	522, 822
BveI	ACCTGC	1 cut(s)	1006
Cac8I	GCNNGC	2 cut(s)	185, 293
CaiI	CAGNNNCTG	1 cut(s)	971
Cfr13I	GGNCC	4 cut(s)	788, 1219, 1305, 1417
ClaI	ATCGAT	1 cut(s)	720
CsiI	ACCWGGT	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	617, 782, 936
CviQI	GTAC	3 cut(s)	617, 782, 936
DdeI	CTNAG	5 cut(s)	222, 246, 341, 534, 588
DpnI	GATC	8 cut(s)	22, 251, 438, 495, 504, 719, 753, 1126
DpnII	GATC	8 cut(s)	20, 249, 436, 493, 502, 717, 751, 1124
DraIII	CACNNNGTG	1 cut(s)	1261
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	3 cut(s)	85, 474, 963
EarI	CTCTTC	3 cut(s)	85, 474, 963
Eco130I	CCWWGG	3 cut(s)	327, 553, 1344
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	788, 1219
Eco57I	CTGAAG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	1219
EcoRII	CCWGG	7 cut(s)	46, 187, 541, 601, 625, 922, 1137
EcoT14I	CCWWGG	3 cut(s)	327, 553, 1344
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	3 cut(s)	327, 553, 1344
FaqI	GGGAC	1 cut(s)	469
FauI	CCCGC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	227, 303, 675, 700
FokI	GGATG	3 cut(s)	227, 856, 1362
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	227, 303, 675, 700
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	4 cut(s)	227, 303, 675, 700
GsaI	CCCAGC	1 cut(s)	1136
GsuI	CTGGAG	3 cut(s)	69, 749, 885
HaeIII	GGCC	3 cut(s)	662, 1307, 1418
HapII	CCGG	1 cut(s)	1146
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	482, 742, 898
HpaII	CCGG	1 cut(s)	1146
HphI	GGTGA	2 cut(s)	320, 999
Hpy166II	GTNNAC	3 cut(s)	517, 1264, 1282
Hpy188I	TCNGA	3 cut(s)	249, 756, 886
Hpy188III	TCNNGA	4 cut(s)	497, 570, 766, 902
Hpy8I	GTNNAC	3 cut(s)	517, 1264, 1282
HpyAV	CCTTC	3 cut(s)	276, 700, 1029
HpyCH4III	ACNGT	3 cut(s)	526, 850, 973
HpyCH4IV	ACGT	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 674, 683, 1424
HpyF3I	CTNAG	5 cut(s)	222, 246, 341, 534, 588
HpySE526I	ACGT	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	8 cut(s)	20, 249, 436, 493, 502, 717, 751, 1124
LmnI	GCTCC	3 cut(s)	49, 610, 768
Lsp1109I	GCAGC	4 cut(s)	213, 314, 661, 711
LweI	GCATC	3 cut(s)	575, 821, 1103
MabI	ACCWGGT	1 cut(s)	541
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	5 cut(s)	284, 633, 850, 908, 1241
MalI	GATC	8 cut(s)	22, 251, 438, 495, 504, 719, 753, 1126
MboI	GATC	8 cut(s)	20, 249, 436, 493, 502, 717, 751, 1124
MboII	GAAGA	9 cut(s)	72, 148, 332, 488, 491, 503, 512, 703, 950
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	2 cut(s)	502, 1124
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	9 cut(s)	33, 387, 471, 770, 807, 977, 1149, 1366, 1396
MlyI	GAGTC	2 cut(s)	491, 892
MmeI	TCCRAC	1 cut(s)	618
MseI	TTAA	9 cut(s)	54, 680, 738, 747, 777, 989, 1088, 1394, 1452
MspA1I	CMGCKG	2 cut(s)	305, 674
MspI	CCGG	1 cut(s)	1146
MspR9I	CCNGG	8 cut(s)	48, 189, 543, 603, 627, 924, 1139, 1146
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	2 cut(s)	154, 952
MvaI	CCWGG	7 cut(s)	48, 189, 543, 603, 627, 924, 1139
MwoI	GCNNNNNNNGC	4 cut(s)	223, 674, 683, 1424
NciI	CCSGG	1 cut(s)	1146
NdeII	GATC	8 cut(s)	20, 249, 436, 493, 502, 717, 751, 1124
NlaIV	GGNNCC	4 cut(s)	45, 1116, 1143, 1221
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	4 cut(s)	623, 922, 1330, 1390
PciI	ACATGT	1 cut(s)	1386
PctI	GAATGC	2 cut(s)	154, 952
PfeI	GAWTC	1 cut(s)	742
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	228, 304, 676, 701
Ple19I	CGATCG	1 cut(s)	23
PleI	GAGTC	2 cut(s)	490, 892
PpsI	GAGTC	2 cut(s)	490, 892
PpuMI	RGGWCCY	1 cut(s)	1219
PscI	ACATGT	1 cut(s)	1386
PshBI	ATTAAT	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	1219
Psp6I	CCWGG	7 cut(s)	46, 187, 541, 601, 625, 922, 1137
PspFI	CCCAGC	1 cut(s)	1132
PspGI	CCWGG	7 cut(s)	46, 187, 541, 601, 625, 922, 1137
PspN4I	GGNNCC	4 cut(s)	45, 1116, 1143, 1221
PspPI	GGNCC	4 cut(s)	788, 1219, 1305, 1417
PspPPI	RGGWCCY	1 cut(s)	1219
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	2 cut(s)	502, 1124
PvuI	CGATCG	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	305, 674
RsaI	GTAC	3 cut(s)	618, 783, 937
RsaNI	GTAC	3 cut(s)	617, 782, 936
SaqAI	TTAA	9 cut(s)	54, 680, 738, 747, 777, 989, 1088, 1394, 1452
SatI	GCNGC	4 cut(s)	227, 303, 675, 700
Sau3AI	GATC	8 cut(s)	20, 249, 436, 493, 502, 717, 751, 1124
Sau96I	GGNCC	4 cut(s)	788, 1219, 1305, 1417
SchI	GAGTC	2 cut(s)	491, 892
ScrFI	CCNGG	8 cut(s)	48, 189, 543, 603, 627, 924, 1139, 1146
SduI	GDGCHC	1 cut(s)	46
SexAI	ACCWGGT	1 cut(s)	541
SfaNI	GCATC	3 cut(s)	575, 821, 1103
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	2 cut(s)	788, 1219
SmlI	CTYRAG	2 cut(s)	359, 1035
SmoI	CTYRAG	2 cut(s)	359, 1035
Sse9I	AATT	9 cut(s)	33, 387, 471, 770, 807, 977, 1149, 1366, 1396
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	8 cut(s)	46, 187, 541, 601, 625, 922, 1137, 1144
StyI	CCWWGG	3 cut(s)	327, 553, 1344
TaaI	ACNGT	3 cut(s)	526, 850, 973
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	3 cut(s)	23, 720, 1316
TasI	AATT	9 cut(s)	33, 387, 471, 770, 807, 977, 1149, 1366, 1396
TatI	WGTACW	2 cut(s)	616, 781
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	9 cut(s)	54, 680, 738, 747, 777, 989, 1088, 1394, 1452
Tru9I	TTAA	9 cut(s)	54, 680, 738, 747, 777, 989, 1088, 1394, 1452
TscAI	CASTG	2 cut(s)	529, 822
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	4 cut(s)	226, 302, 674, 699
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	6 cut(s)	23, 29, 125, 704, 1178, 1451
TspRI	CASTG	2 cut(s)	529, 822
VpaK11BI	GGWCC	2 cut(s)	788, 1219
VspI	ATTAAT	1 cut(s)	777
XceI	RCATGY	4 cut(s)	623, 922, 1330, 1390
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.