Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Forward (+)

27631571 .. 27635926

Gene Structure 4356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGACAGCCTCTGCTCTAACCATTACTCCAAAGCTTCACCCCCACATTAATCCCAAAACGTCATTCCCTTCTTGCTGTTCATGTTCTTGTTCCTCAGCAACTGAAAACAATGCCAAGCTAACTTGGGAATCAAATGTTGTGAATAGAAGGAGTGTGTTCAATGTGGGTATTGGTCTCTTAGCAGCTTCAGTTGTGGCATTGTCACCTTTGGAAGCTAATGCCACGAGAGTTGAGTACTACGCCACCGTGGGAGAGCCTCTGTGTGAGATGAACTTTGCTCGTTCTGGGCTTGGTTTCTGTGATCTGTCAGTCGGGTCGGGTATACAAGCTCCTCGTGGTGAGCTCATCAATATTCACTACACTGCAAGATTCGGTGATGGGACAGTCTTTGACAGCAGCTACAAACGTGGTAGACCTCTCACTATGCGCATTGGTGTTGGCAAGGTCATTAAGGGACTGGATCAAGGAATCTTTGGGGGTGAAGGTGTGCCTCCAATGCAAGTAGGGGGGAAACGGAAGCTTCACATTCCTTCAAATTTAGCATATGGGCCAGAACCTGCCGGATGCTTTGCAGGTGACTGCAATATACCTGGAAATGCTATTCTTGACTACGATATTAATTTTGTTGGCATCTACTCGGGAAATAGAGCATTACCTACAAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

222

Amino Acids

23.51

Weight (kDa)

8.79

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	110 - 207	2.5e-23	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	563
Acc16I	TGCGCA	1 cut(s)	428
Acc36I	ACCTGC	2 cut(s)	563, 565
AccI	GTMKAC	2 cut(s)	322, 412
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	160, 534
AjnI	CCWGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	8 cut(s)	34, 118, 185, 215, 329, 343, 399, 520
AluI	AGCT	8 cut(s)	34, 118, 185, 215, 329, 343, 399, 520
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	468
AlwNI	CAGNNNCTG	3 cut(s)	11, 101, 557
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	1 cut(s)	548
ApeKI	GCWGC	2 cut(s)	182, 396
ApoI	RAATTY	1 cut(s)	535
AseI	ATTAAT	2 cut(s)	48, 618
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	6 cut(s)	29, 195, 350, 386, 491, 587
AvaI	CYCGRG	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	345
BauI	CACGAG	2 cut(s)	223, 333
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	194, 408
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	179
BfuAI	ACCTGC	2 cut(s)	563, 565
BisI	GCNGC	2 cut(s)	183, 397
BlsI	GCNGC	2 cut(s)	184, 398
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	2 cut(s)	554, 639
Bpu10I	CCTNAGC	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	569
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	194, 408
BshFI	GGCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	561
BslFI	GGGAC	2 cut(s)	394, 468
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	394, 468
BsnI	GGCC	1 cut(s)	550
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	301, 460
BspANI	GGCC	1 cut(s)	550
BspCNI	CTCAG	1 cut(s)	107
BspMI	ACCTGC	2 cut(s)	563, 565
BspPI	GGATC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	301, 460
BssNAI	GTATAC	1 cut(s)	323
BssSI	CACGAG	2 cut(s)	223, 333
Bst1107I	GTATAC	1 cut(s)	323
Bst2BI	CACGAG	2 cut(s)	223, 333
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	2 cut(s)	247, 385
BstDEI	CTNAG	2 cut(s)	94, 178
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	304, 463
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	2 cut(s)	301, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	589
BstV1I	GCAGC	2 cut(s)	194, 408
BstZ17I	GTATAC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	550
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	569
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	2 cut(s)	563, 565
CaiI	CAGNNNCTG	3 cut(s)	11, 101, 557
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	1 cut(s)	81
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	94, 178
DpnI	GATC	2 cut(s)	303, 462
DpnII	GATC	2 cut(s)	301, 460
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	84
FaiI	YATR	6 cut(s)	82, 323, 425, 544, 546, 587
FaqI	GGGAC	2 cut(s)	394, 468
FatI	CATG	1 cut(s)	80
FauNDI	CATATG	1 cut(s)	544
FblI	GTMKAC	2 cut(s)	322, 412
Fnu4HI	GCNGC	2 cut(s)	183, 397
FokI	GGATG	1 cut(s)	576
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	183, 397
FspAI	RTGCGCAY	1 cut(s)	428
FspI	TGCGCA	1 cut(s)	428
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	2 cut(s)	183, 397
HaeIII	GGCC	1 cut(s)	550
HapII	CCGG	1 cut(s)	561
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	2 cut(s)	32, 518
HinfI	GANTC	3 cut(s)	128, 369, 468
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	6 cut(s)	29, 195, 350, 386, 491, 587
Hpy166II	GTNNAC	2 cut(s)	323, 413
Hpy188III	TCNNGA	2 cut(s)	605, 639
Hpy8I	GTNNAC	2 cut(s)	323, 413
HpyAV	CCTTC	4 cut(s)	78, 141, 476, 540
HpyCH4III	ACNGT	2 cut(s)	247, 385
HpyCH4IV	ACGT	2 cut(s)	59, 406
HpyCH4V	TGCA	4 cut(s)	365, 499, 572, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	2 cut(s)	94, 178
HpySE526I	ACGT	2 cut(s)	59, 406
Hsp92II	CATG	1 cut(s)	84
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	301, 460
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	270, 443, 558, 564, 570, 574, 576, 603
Lsp1109I	GCAGC	2 cut(s)	194, 408
LweI	GCATC	2 cut(s)	554, 639
MaeII	ACGT	2 cut(s)	59, 406
MaeIII	GTNAC	2 cut(s)	201, 575
MalI	GATC	2 cut(s)	303, 462
MboI	GATC	2 cut(s)	301, 460
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	2 cut(s)	535, 619
MnlI	CCTC	6 cut(s)	19, 103, 267, 342, 426, 501
MseI	TTAA	3 cut(s)	48, 450, 618
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	591
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	2 cut(s)	301, 460
NlaIII	CATG	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	201, 575
NsbI	TGCGCA	1 cut(s)	428
PaqCI	CACCTGC	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	128, 369, 468
PkrI	GCNGC	2 cut(s)	184, 398
PshBI	ATTAAT	2 cut(s)	48, 618
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	548
PstNI	CAGNNNCTG	3 cut(s)	11, 101, 557
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	48, 450, 618
SatI	GCNGC	2 cut(s)	183, 397
Sau3AI	GATC	2 cut(s)	301, 460
Sau96I	GGNCC	1 cut(s)	548
ScaI	AGTACT	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	2 cut(s)	554, 639
Sse9I	AATT	2 cut(s)	535, 619
SspI	AATATT	1 cut(s)	352
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	247, 385
TaiI	ACGT	2 cut(s)	62, 409
TasI	AATT	2 cut(s)	535, 619
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	3 cut(s)	128, 369, 468
Tru1I	TTAA	3 cut(s)	48, 450, 618
Tru9I	TTAA	3 cut(s)	48, 450, 618
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	201, 575
TseI	GCWGC	2 cut(s)	182, 396
Tsp45I	GTSAC	2 cut(s)	201, 575
TspDTI	ATGAA	2 cut(s)	69, 284
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	1 cut(s)	367
VspI	ATTAAT	2 cut(s)	48, 618
XapI	RAATTY	1 cut(s)	535
XmiI	GTMKAC	2 cut(s)	322, 412
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.