Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012300

Physical Location & Seq

Genomic Coordinates Reverse (-)

27871278 .. 27872018

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTCTTCCATCGGTGCAAGCTATGCTGGTGTTTATGTCATGCAGAAGAGGCAGAAGGAGAAACTGGTGAGGATGAAGCAAGAGGAGAGGGCCAGGAGAGGAGACGGAAGCAGTACTTTAGATGATCAAGACATAAGGCCTACACAATATGGCCGGAAGAAGAAGGTCCATCCGGGAGATTTTCCGGCTTCGGACAGCACCGGTCCGGCGAAGGCTTACCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.4

Weight (kDa)

9.85

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22122 AT4G39675
fragaria_vesca	FvH4_1g21780
prunus_persica	Prupe.6G177800_v2.0.a1 Prupe.6G177900_v2.0.a1 Prupe.6G178000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115661 RchiOBHm_Chr7g0216891
rosa_roxburghii	Rroxscaffold_2G00128860 Rroxscaffold_2G00128870 Rroxscaffold_2G00128880
rosa_rugosa	Rorug02G0199100 Rorug02G0199200
rosa_samantha	Rh2AG256400 Rh2BG267000 Rh2CG261800 Rh2CG261900 Rh2DG264700 Rh2DG264800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	151
AfaI	GTAC	1 cut(s)	115
AgeI	ACCGGT	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	3 cut(s)	90, 137, 151
AsiGI	ACCGGT	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	90, 166, 203
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	166, 203
BccI	CCATC	2 cut(s)	17, 177
BciT130I	CCWGG	1 cut(s)	94
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	96
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	94, 174
Bme18I	GGWCC	2 cut(s)	166, 203
BmgT120I	GGNCC	3 cut(s)	90, 166, 203
BmrFI	CCNGG	2 cut(s)	94, 174
BpuMI	CCSGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	78, 169
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	98, 114
BshFI	GGCC	3 cut(s)	92, 139, 153
BshTI	ACCGGT	1 cut(s)	200
BsiSI	CCGG	5 cut(s)	154, 173, 185, 201, 206
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsnI	GGCC	3 cut(s)	92, 139, 153
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	3 cut(s)	92, 139, 153
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	200
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	78, 169
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 49
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	92, 172
BsuRI	GGCC	3 cut(s)	92, 139, 153
BtsCI	GGATG	2 cut(s)	78, 169
Cac8I	GCNNGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	90, 166, 203
CpoI	CGGWCCG	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	114
CspAI	ACCGGT	1 cut(s)	200
CspI	CGGWCCG	1 cut(s)	203
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	6 cut(s)	21, 92, 139, 153, 188, 215
CviKI_1	RGCY	6 cut(s)	21, 92, 139, 153, 188, 215
CviQI	GTAC	1 cut(s)	114
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	166, 203
EcoRII	CCWGG	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	43
FaiI	YATR	5 cut(s)	24, 36, 41, 134, 150
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FatI	CATG	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	124
FokI	GGATG	2 cut(s)	85, 156
HaeIII	GGCC	3 cut(s)	92, 139, 153
HapII	CCGG	5 cut(s)	154, 173, 185, 201, 206
Hin1II	CATG	1 cut(s)	43
HpaII	CCGG	5 cut(s)	154, 173, 185, 201, 206
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	49, 157, 205
HpyCH4V	TGCA	2 cut(s)	17, 43
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 49
Hsp92II	CATG	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	9 cut(s)	12, 50, 79, 106, 167, 186, 198, 214, 219
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	58, 169, 172
MluCI	AATT	1 cut(s)	223
MnlI	CCTC	5 cut(s)	42, 63, 76, 81, 92
MseI	TTAA	1 cut(s)	226
MspI	CCGG	5 cut(s)	154, 173, 185, 201, 206
MspR9I	CCNGG	2 cut(s)	94, 174
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	23, 49
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	172
PinAI	ACCGGT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspPI	GGNCC	3 cut(s)	90, 166, 203
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
Rsr2I	CGGWCCG	1 cut(s)	203
RsrII	CGGWCCG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	226
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	3 cut(s)	90, 166, 203
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	94, 174
SetI	ASST	2 cut(s)	23, 168
SinI	GGWCC	2 cut(s)	166, 203
Sse9I	AATT	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	139
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	2 cut(s)	92, 172
TasI	AATT	1 cut(s)	223
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	120
VpaK11BI	GGWCC	2 cut(s)	166, 203
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.