Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012300

Physical Location & Seq

Genomic Coordinates Forward (+)

28535111 .. 28538968

Gene Structure 3858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG264800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGATTCTAGCCGGAAGGGCGGCGCCGCTCTAGAGACTCGAAACCTAGGTCTTCGATTGGGGCTAGCTATGCAGGAATTTATGTTACTACAGAAGAGACAAGAGCAGAAAATGGATAGGACTAAGAAGGAGAAAGCGAGGAAAAGAGAGAGCAGTAATGATGTAGATGACCAAGAGACCAAAGTCACTACACAATCCGGAAGGAATAAGAAAGTCCATCGCGGAAACTTTCCTGCCCCGGCAAGTACTACCAGTCCGATTCTTCATACAAAAGATATTCACATGCCACACTCCACTACTTCACCTAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.73

Weight (kDa)

10.22

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22122 AT4G39675
fragaria_vesca	FvH4_1g21780
prunus_persica	Prupe.6G177800_v2.0.a1 Prupe.6G177900_v2.0.a1 Prupe.6G178000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115661 RchiOBHm_Chr7g0216891
rosa_roxburghii	Rroxscaffold_2G00128860 Rroxscaffold_2G00128870 Rroxscaffold_2G00128880
rosa_rugosa	Rorug02G0199100 Rorug02G0199200
rosa_samantha	Rh2AG256400 Rh2BG267000 Rh2CG261800 Rh2CG261900 Rh2DG264700 Rh2DG264800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	3 cut(s)	21, 27, 222
AcsI	RAATTY	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	247
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	29, 91, 170
Aor13HI	TCCGGA	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AspA2I	CCTAGG	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	294
AsuNHI	GCTAGC	1 cut(s)	64
AvrII	CCTAGG	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	44
BccI	CCATC	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	3 cut(s)	29, 91, 170
BfaI	CTAG	4 cut(s)	9, 32, 47, 65
BfmI	CTRYAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	22, 27
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	2 cut(s)	23, 28
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	239
BmtI	GCTAGC	1 cut(s)	68
BoxI	GACNNNNGTC	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	46, 237
BsaWI	WCCGGW	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	46, 237
BseNI	ACTGG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	13, 198, 239
BsmAI	GTCTC	3 cut(s)	29, 91, 170
Bso31I	GGTCTC	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	197
BspACI	CCGC	3 cut(s)	21, 27, 222
BspEI	TCCGGA	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	25
BspOI	GCTAGC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	46, 237
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstMAI	GTCTC	3 cut(s)	29, 91, 170
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 70
BstNSI	RCATGY	1 cut(s)	286
BstPAI	GACNNNNGTC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	3 cut(s)	12, 64, 68
CviKI_1	RGCY	3 cut(s)	12, 64, 68
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	123
DinI	GGCGCC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	286
FaiI	YATR	4 cut(s)	71, 83, 267, 284
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	22, 27
Fsp4HI	GCNGC	2 cut(s)	22, 27
FspBI	CTAG	4 cut(s)	9, 32, 47, 65
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	2 cut(s)	22, 27
HaeII	RGCGCY	1 cut(s)	27
HapII	CCGG	3 cut(s)	13, 198, 239
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	5, 37, 259
HpaII	CCGG	3 cut(s)	13, 198, 239
HphI	GGTGA	1 cut(s)	294
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	32, 198
HpyAV	CCTTC	3 cut(s)	10, 121, 195
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 70
HpyF3I	CTNAG	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	197
LpnPI	CCDG	6 cut(s)	26, 59, 211, 246, 252, 265
MaeI	CTAG	4 cut(s)	9, 32, 47, 65
MaeIII	GTNAC	2 cut(s)	84, 184
MbiI	CCGCTC	1 cut(s)	29
MboII	GAAGA	3 cut(s)	44, 106, 254
MluCI	AATT	1 cut(s)	77
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	132
MroI	TCCGGA	1 cut(s)	197
MspI	CCGG	3 cut(s)	13, 198, 239
MspR9I	CCNGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	18, 70
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	239
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	5, 259
PkrI	GCNGC	2 cut(s)	23, 28
PleI	GAGTC	1 cut(s)	31
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	31
PshAI	GACNNNNGTC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SatI	GCNGC	2 cut(s)	22, 27
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	4 cut(s)	48, 52, 70, 307
SfcI	CTRYAG	1 cut(s)	89
SfoI	GGCGCC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	3 cut(s)	21, 27, 222
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	4 cut(s)	9, 32, 47, 65
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	46
TaqI	TCGA	2 cut(s)	40, 55
TasI	AATT	1 cut(s)	77
TatI	WGTACW	1 cut(s)	245
TauI	GCSGC	2 cut(s)	24, 29
TfiI	GAWTC	2 cut(s)	5, 259
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	254
XapI	RAATTY	1 cut(s)	77
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	1 cut(s)	286
XmaJI	CCTAGG	1 cut(s)	46
XspI	CTAG	4 cut(s)	9, 32, 47, 65
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.