Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012300

Physical Location & Seq

Genomic Coordinates Reverse (-)

18595266 .. 18597149

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0199100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGCCGAAGAAAATAAAAGACGACAAAGCTATCAATTCTGGTGAAGCGGCCAAAAACAAGAAGGTGACGGTTGGCCGATATGCGTTCAACCGATACCTGAAAATTCAAGCTGATGAGAAAAAGGCAAAGATAGATAATAAGTTCAGAAAAGAGGTTGCTTTTCAATGGCATACATTGAACCCTAATCAGAAGGCCGAATATTTTGTTCCAAACTCGAATGATTCCAATGCAATTCCTAAGGTCAATAGTGATACTTTAGCAGACTCAAAATTCATGGCCACACGGTGTAGTCCGAAAAAGTTTCAAGATCTTGTTTCCAGATTTTCAGAAGATCAAATTACTGCAGCAAAGGGAATGGGATTTGGCACCTTGTTGCAATTGTCCTGCACTAGAATTATAAATGCAGCAGTTAGTCTTCTCAGGGATCCAGAGTCATCTACTTGGTATTACACTACATGCTTTTCGGATAGAGCAATTAACGCTGCCAAGAAAGGAGGTAATGATTTGTTAGAATTTGCTGCCACGGCACCAAAGAGATTTGCCTCTATATTACAATATCGAAAAGGCCTTAAGAATGGAGAAAAGTTAGATTCCGTAAATCGTCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGCAATTGATGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTGTTCAAAAGTCGTGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAACTCTCGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

32.52

Weight (kDa)

10.01

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22122 AT4G39675
fragaria_vesca	FvH4_1g21780
prunus_persica	Prupe.6G177800_v2.0.a1 Prupe.6G177900_v2.0.a1 Prupe.6G178000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115661 RchiOBHm_Chr7g0216891
rosa_roxburghii	Rroxscaffold_2G00128860 Rroxscaffold_2G00128870 Rroxscaffold_2G00128880
rosa_rugosa	Rorug02G0199100 Rorug02G0199200
rosa_samantha	Rh2AG256400 Rh2BG267000 Rh2CG261800 Rh2CG261900 Rh2DG264700 Rh2DG264800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AccB1I	GGYRCC	4 cut(s)	4, 368, 529, 701
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	422, 435
AcoI	YGGCCR	3 cut(s)	51, 76, 279
AcsI	RAATTY	3 cut(s)	105, 272, 515
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	655
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	7 cut(s)	91, 110, 167, 181, 308, 634, 786
AluBI	AGCT	4 cut(s)	32, 113, 743, 780
AluI	AGCT	4 cut(s)	32, 113, 743, 780
AlwI	GGATC	2 cut(s)	422, 435
AoxI	GGCC	5 cut(s)	51, 76, 195, 279, 568
ApeKI	GCWGC	4 cut(s)	347, 407, 485, 521
ApoI	RAATTY	3 cut(s)	105, 272, 515
AseI	ATTAAT	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	56, 79, 670
AxyI	CCTNAGG	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	4 cut(s)	4, 368, 529, 701
BauI	CACGAG	1 cut(s)	840
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	359, 419, 472, 508
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	1 cut(s)	543
BclI	TGATCA	1 cut(s)	760
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	572
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	5 cut(s)	51, 348, 408, 486, 522
BlsI	GCNGC	5 cut(s)	52, 349, 409, 487, 523
BmiI	GGNNCC	5 cut(s)	6, 370, 429, 531, 703
BpiI	GAAGAC	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	751
Bse21I	CCTNAGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	633
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMII	CTCAG	1 cut(s)	436
BseNI	ACTGG	1 cut(s)	751
BseXI	GCAGC	4 cut(s)	359, 419, 472, 508
BsgI	GTGCAG	2 cut(s)	373, 815
BshFI	GGCC	5 cut(s)	53, 78, 197, 281, 570
BshNI	GGYRCC	4 cut(s)	4, 368, 529, 701
BslI	CCNNNNNNNGG	1 cut(s)	655
BsnI	GGCC	5 cut(s)	53, 78, 197, 281, 570
Bsp143I	GATC	5 cut(s)	310, 334, 427, 714, 760
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	5 cut(s)	53, 78, 197, 281, 570
BspCNI	CTCAG	1 cut(s)	435
BspLI	GGNNCC	5 cut(s)	6, 370, 429, 531, 703
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	2 cut(s)	422, 435
BspT107I	GGYRCC	4 cut(s)	4, 368, 529, 701
BspTI	CTTAAG	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	751
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	5 cut(s)	310, 334, 427, 714, 760
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	840
Bst4CI	ACNGT	2 cut(s)	73, 288
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	572
BstDEI	CTNAG	2 cut(s)	240, 422
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	633
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	5 cut(s)	313, 337, 430, 717, 763
BstMBI	GATC	5 cut(s)	310, 334, 427, 714, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 527
BstNSI	RCATGY	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	4 cut(s)	359, 419, 472, 508
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	310, 427
BstYI	RGATCY	2 cut(s)	310, 427
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	5 cut(s)	53, 78, 197, 281, 570
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	633
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	4 cut(s)	277, 459, 654, 770
DdeI	CTNAG	2 cut(s)	240, 422
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	312, 336, 429, 716, 762
DpnII	GATC	5 cut(s)	310, 334, 427, 714, 760
DraIII	CACNNNGTG	1 cut(s)	288
EaeI	YGGCCR	3 cut(s)	51, 76, 279
Eco147I	AGGCCT	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	4 cut(s)	280, 462, 657, 773
FaiI	YATR	8 cut(s)	84, 174, 278, 401, 460, 551, 655, 771
FatI	CATG	4 cut(s)	276, 458, 653, 769
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	5 cut(s)	51, 348, 408, 486, 522
FokI	GGATG	1 cut(s)	640
Fsp4HI	GCNGC	5 cut(s)	51, 348, 408, 486, 522
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	51, 348, 408, 486, 522
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	53, 78, 197, 281, 570
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	280, 462, 657, 773
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	224, 266, 434, 593
HphI	GGTGA	3 cut(s)	56, 79, 670
Hpy188I	TCNGA	5 cut(s)	149, 192, 297, 331, 469
Hpy188III	TCNNGA	5 cut(s)	308, 321, 431, 718, 864
Hpy99I	CGWCG	1 cut(s)	609
HpyAV	CCTTC	2 cut(s)	58, 187
HpyCH4III	ACNGT	2 cut(s)	73, 288
HpyCH4V	TGCA	8 cut(s)	233, 347, 379, 390, 407, 613, 796, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 527
HpyF3I	CTNAG	2 cut(s)	240, 422
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	280, 462, 657, 773
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	5 cut(s)	310, 334, 427, 714, 760
LpnPI	CCDG	7 cut(s)	27, 113, 334, 400, 409, 444, 732
Lsp1109I	GCAGC	4 cut(s)	359, 419, 472, 508
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	5 cut(s)	312, 336, 429, 716, 762
MboI	GATC	5 cut(s)	310, 334, 427, 714, 760
MboII	GAAGA	3 cut(s)	22, 344, 410
MfeI	CAATTG	2 cut(s)	380, 732
MflI	RGATCY	2 cut(s)	310, 427
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	260, 443
MnlI	CCTC	6 cut(s)	148, 491, 556, 664, 817, 849
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	3 cut(s)	480, 573, 666
Msp20I	TGGCCA	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	572
MunI	CAATTG	2 cut(s)	380, 732
MwoI	GCNNNNNNNGC	2 cut(s)	482, 527
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	5 cut(s)	310, 334, 427, 714, 760
NlaIII	CATG	4 cut(s)	280, 462, 657, 773
NlaIV	GGNNCC	5 cut(s)	6, 370, 429, 531, 703
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	224, 593
PkrI	GCNGC	5 cut(s)	52, 349, 409, 487, 523
PleI	GAGTC	2 cut(s)	260, 442
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	260, 442
PshBI	ATTAAT	1 cut(s)	666
PsiI	TTATAA	1 cut(s)	401
PspN4I	GGNNCC	5 cut(s)	6, 370, 429, 531, 703
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	2 cut(s)	310, 427
SaqAI	TTAA	3 cut(s)	480, 573, 666
SatI	GCNGC	5 cut(s)	51, 348, 408, 486, 522
Sau3AI	GATC	5 cut(s)	310, 334, 427, 714, 760
SchI	GAGTC	2 cut(s)	260, 443
SfcI	CTRYAG	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	1 cut(s)	50
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	73, 288
TaqI	TCGA	3 cut(s)	218, 562, 865
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	224, 593
Tru1I	TTAA	3 cut(s)	480, 573, 666
Tru9I	TTAA	3 cut(s)	480, 573, 666
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	347, 407, 485, 521
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	265, 699, 753
TspGWI	ACGGA	1 cut(s)	586
Vha464I	CTTAAG	1 cut(s)	572
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	3 cut(s)	105, 272, 515
XceI	RCATGY	1 cut(s)	462
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.