Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012300

Physical Location & Seq

Genomic Coordinates Reverse (-)

28532571 .. 28533242

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG264700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGGTATGCCACACGCCCACAACAGTTCCCGCGTCCGAATGAAGAGGCAGAAGGAGAAACTGGTGAGGATGAAGCAAGAGGAGAGAGCCAGGAGAGGAGACGGAAGCAGTGCTTTAGATGATCAAGACATAAGGCCTACACAATATGGCCGGAAGAAGAAGGTCCATCCGGGAGATTTTCCGGCTTCGGACAGCACCGGTCCGGCGAAGGCTTACCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.42

Weight (kDa)

10.33

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22122 AT4G39675
fragaria_vesca	FvH4_1g21780
prunus_persica	Prupe.6G177800_v2.0.a1 Prupe.6G177900_v2.0.a1 Prupe.6G178000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115661 RchiOBHm_Chr7g0216891
rosa_roxburghii	Rroxscaffold_2G00128860 Rroxscaffold_2G00128870 Rroxscaffold_2G00128880
rosa_rugosa	Rorug02G0199100 Rorug02G0199200
rosa_samantha	Rh2AG256400 Rh2BG267000 Rh2CG261800 Rh2CG261900 Rh2DG264700 Rh2DG264800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	93
AoxI	GGCC	2 cut(s)	134, 148
AsiGI	ACCGGT	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	163, 200
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	163, 200
BccI	CCATC	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	91
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	91, 171
Bme18I	GGWCC	2 cut(s)	163, 200
BmgT120I	GGNCC	2 cut(s)	163, 200
BmrFI	CCNGG	2 cut(s)	91, 171
BpuMI	CCSGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	75, 166
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	2 cut(s)	95, 111
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	136, 150
BshTI	ACCGGT	1 cut(s)	197
BsiSI	CCGG	5 cut(s)	151, 170, 182, 198, 203
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	136, 150
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	136, 150
BspFNI	CGCG	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	197
BssMI	GATC	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	75, 166
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	89, 169
BstUI	CGCG	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	136, 150
BtsCI	GGATG	2 cut(s)	75, 166
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	163, 200
CpoI	CGGWCCG	1 cut(s)	200
CseI	GACGC	1 cut(s)	22
CspAI	ACCGGT	1 cut(s)	197
CspI	CGGWCCG	1 cut(s)	200
CviJI	RGCY	5 cut(s)	89, 136, 150, 185, 212
CviKI_1	RGCY	5 cut(s)	89, 136, 150, 185, 212
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	163, 200
EcoRII	CCWGG	1 cut(s)	89
Esp3I	CGTCTC	1 cut(s)	93
FaiI	YATR	3 cut(s)	8, 131, 147
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	121
FokI	GGATG	2 cut(s)	82, 153
HaeIII	GGCC	2 cut(s)	136, 150
HapII	CCGG	5 cut(s)	151, 170, 182, 198, 203
HgaI	GACGC	1 cut(s)	22
HpaII	CCGG	5 cut(s)	151, 170, 182, 198, 203
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	38, 190
Hpy188III	TCNNGA	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	46, 154, 202
HpyCH4III	ACNGT	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	47, 76, 103, 164, 183, 195, 211, 216
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	55, 166, 169
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	4 cut(s)	39, 60, 73, 89
MseI	TTAA	1 cut(s)	223
MspI	CCGG	5 cut(s)	151, 170, 182, 198, 203
MspR9I	CCNGG	2 cut(s)	91, 171
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	169
PinAI	ACCGGT	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	163, 200
Rsr2I	CGGWCCG	1 cut(s)	200
RsrII	CGGWCCG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	223
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	163, 200
ScrFI	CCNGG	2 cut(s)	91, 171
SetI	ASST	1 cut(s)	165
SinI	GGWCC	2 cut(s)	163, 200
Sse9I	AATT	1 cut(s)	220
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	89, 169
TaaI	ACNGT	1 cut(s)	26
TasI	AATT	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	223
Tru9I	TTAA	1 cut(s)	223
TscAI	CASTG	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	56, 86
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	163, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.