Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012300

Physical Location & Seq

Genomic Coordinates Reverse (-)

64602962 .. 64610855

Gene Structure 7894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTTCGATTGGAGCTAGCTATGCAGGAGTTTATGTTCTGCAGAAGAGACAGAAAGAGAAAATGGAGAGGATTGTGAAGGAGAAGGGGAGGAGACGAGAGAGCAATAGTAATGAAGATGATCAAGAAATCAAGTCTAGGAAGAATTGTCTCCCACTGCTCCGGCTTATTGGTTTGGTGAAAGGACTTGAATACCGGGCTCGACATTTTTTGGGGCTGTTCGAATCTGGTGGAGAGGGAGAGATGGCGCCCTGCCGGAAGCTTCGGGTGGATAAATATTTTGTGGATTCAAGTGGTGAGAACACCGAGTGCTTCGCTAGGGCAGTTGCCATATGGCAAGGAAAGAGAAATTCTTTAGTATTTGAGGAGCTAATGGAACACGTGAAGGAAAAGGAGGAGAAAGAAGCTAAAGGTGTAAACATCTTGCAGATGATTTCTTTCATCTCTTATCTTCTATCAAGGTGCAGCAGTGCTATTGGTGAAGAGAGCTCCTGCAAGGAGATAATCGATAAACATATAATGCAATTGAAAGAACAAGCAAACGAGAAAGAGAGAAAGTGGAAGGAAGAGAAGGTCTTAGTTTTGATTAGGCTTCGGTGCAAACCAAATCCGAGCATTGCTAAGGCATGGTGCCTTAGATTGAAGAAACATTTTGAGAAATTTTCAATAATCGAGGAAGCAATTGAAAACAAACACGATGATGTCAAGACTCAGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

240

Amino Acids

27.89

Weight (kDa)

8.94

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22122 AT4G39675
fragaria_vesca	FvH4_1g21780
prunus_persica	Prupe.6G177800_v2.0.a1 Prupe.6G177900_v2.0.a1 Prupe.6G178000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115661 RchiOBHm_Chr7g0216891
rosa_roxburghii	Rroxscaffold_2G00128860 Rroxscaffold_2G00128870 Rroxscaffold_2G00128880
rosa_rugosa	Rorug02G0199100 Rorug02G0199200
rosa_samantha	Rh2AG256400 Rh2BG267000 Rh2CG261800 Rh2CG261900 Rh2DG264700 Rh2DG264800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	247, 630
AcsI	RAATTY	2 cut(s)	349, 659
AcvI	CACGTG	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	248
AdeI	CACNNNGTG	1 cut(s)	309
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	6 cut(s)	191, 291, 529, 643, 666, 686
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	6 cut(s)	17, 21, 262, 370, 407, 489
AluI	AGCT	6 cut(s)	17, 21, 262, 370, 407, 489
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	3 cut(s)	43, 88, 155
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	2 cut(s)	349, 659
AspLEI	GCGC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	190, 308, 491
AsuII	TTCGAA	1 cut(s)	222
AsuNHI	GCTAGC	1 cut(s)	17
BanI	GGYRCC	2 cut(s)	247, 630
BanII	GRGCYC	2 cut(s)	202, 491
BbrPI	CACGTG	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	1 cut(s)	238
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	3 cut(s)	43, 88, 155
BfaI	CTAG	3 cut(s)	18, 138, 318
BfmI	CTRYAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	249, 632
BmrFI	CCNGG	1 cut(s)	197
BmtI	GCTAGC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	507
BsaAI	YACGTR	1 cut(s)	382
BsaHI	GRCGYC	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bse3DI	GCAATG	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	507
BseMI	GCAATG	1 cut(s)	615
BseRI	GAGGAG	3 cut(s)	106, 380, 410
BseXI	GCAGC	1 cut(s)	477
BsgI	GTGCAG	1 cut(s)	484
BshNI	GGYRCC	2 cut(s)	247, 630
BshVI	ATCGAT	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	491
BsiSI	CCGG	3 cut(s)	163, 196, 256
BsmAI	GTCTC	3 cut(s)	43, 88, 155
BsmBI	CGTCTC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	202, 491
Bsp143I	GATC	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	249, 632
BspMAI	CTGCAG	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	247, 630
BsrDI	GCAATG	1 cut(s)	615
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	248
Bst6I	CTCTTC	3 cut(s)	41, 477, 561
BstACI	GRCGYC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	382
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	4 cut(s)	577, 621, 635, 711
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	3 cut(s)	43, 88, 155
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	477
Bsu15I	ATCGAT	1 cut(s)	507
BsuTUI	ATCGAT	1 cut(s)	507
BtsI	GCAGTG	2 cut(s)	155, 475
BtsIMutI	CAGTG	2 cut(s)	155, 475
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	507
CviAII	CATG	1 cut(s)	627
DdeI	CTNAG	4 cut(s)	577, 621, 635, 711
DinI	GGCGCC	1 cut(s)	249
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraIII	CACNNNGTG	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	41, 477, 561
EarI	CTCTTC	3 cut(s)	41, 477, 561
Ecl136II	GAGCTC	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	202, 491
Eco53kI	GAGCTC	1 cut(s)	489
Eco72I	CACGTG	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	202, 491
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	630
FaiI	YATR	7 cut(s)	24, 36, 332, 334, 516, 518, 628
FatI	CATG	1 cut(s)	626
FauNDI	CATATG	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	466
FriOI	GRGCYC	2 cut(s)	202, 491
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	3 cut(s)	18, 138, 318
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	466
HaeII	RGCGCY	1 cut(s)	251
HapII	CCGG	3 cut(s)	163, 196, 256
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	630
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	224, 287, 709
HpaII	CCGG	3 cut(s)	163, 196, 256
HphI	GGTGA	3 cut(s)	190, 308, 491
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	1 cut(s)	612
Hpy188III	TCNNGA	3 cut(s)	125, 706, 713
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	5 cut(s)	73, 79, 379, 556, 565
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	7 cut(s)	26, 43, 427, 465, 495, 523, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	577, 621, 635, 711
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	630
HspAI	GCGC	1 cut(s)	248
KasI	GGCGCC	1 cut(s)	247
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	4 cut(s)	14, 165, 367, 494
LpnPI	CCDG	8 cut(s)	12, 176, 209, 213, 265, 269, 505, 698
Lsp1109I	GCAGC	1 cut(s)	477
MaeI	CTAG	3 cut(s)	18, 138, 318
MaeII	ACGT	1 cut(s)	381
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	7 cut(s)	58, 128, 154, 443, 494, 578, 655
MfeI	CAATTG	2 cut(s)	524, 681
MhlI	GDGCHC	2 cut(s)	202, 491
MluCI	AATT	5 cut(s)	145, 349, 524, 659, 681
Mly113I	GGCGCC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	703
MnlI	CCTC	6 cut(s)	63, 84, 229, 358, 388, 667
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	3 cut(s)	163, 196, 256
MspR9I	CCNGG	1 cut(s)	197
MunI	CAATTG	2 cut(s)	524, 681
MwoI	GCNNNNNNNGC	1 cut(s)	23
NarI	GGCGCC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	1 cut(s)	121
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	630
NlaIV	GGNNCC	2 cut(s)	249, 632
NspV	TTCGAA	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	224, 287
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	703
PluTI	GGCGCC	1 cut(s)	251
PmaCI	CACGTG	1 cut(s)	382
PmlI	CACGTG	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	703
Ppu21I	YACGTR	1 cut(s)	382
Psp124BI	GAGCTC	1 cut(s)	491
PspCI	CACGTG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	249, 632
PstI	CTGCAG	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	491
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	202, 491
SfcI	CTRYAG	1 cut(s)	41
SfoI	GGCGCC	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	699
Sse9I	AATT	5 cut(s)	145, 349, 524, 659, 681
SspDI	GGCGCC	1 cut(s)	247
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	3 cut(s)	18, 138, 318
SstI	GAGCTC	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	195
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	5 cut(s)	8, 202, 222, 507, 672
TasI	AATT	5 cut(s)	145, 349, 524, 659, 681
TfiI	GAWTC	2 cut(s)	224, 287
TscAI	CASTG	2 cut(s)	162, 475
TseI	GCWGC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	129, 430
TspRI	CASTG	2 cut(s)	162, 475
XapI	RAATTY	2 cut(s)	349, 659
XspI	CTAG	3 cut(s)	18, 138, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.