Rh2BG267000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012300
Physical Location & Seq
Reverse (-)
28690334 .. 28696983
6650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG267000.1

Sequence Viewer

Length: 228 bp
ATGGACTTTCTTATTCCTTCCGGATTGTGTAGTGACTTTGGTCTCTTGAAGAGGCAGAAGGAGAAACTGGTGAGGATGAAGCAAGAGGAGAGAGCCAGGAGAGGAGACGGAAGCAGTGCTTTAGATGATCAAGACATAAGGCCTACACAATATGGCCGGAAGAAGGTCCATCCGGGAGATTTTCCGGCTTCGGACAGAACCGGTCCGGCGAAGGCTTACCAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.48

Weight (kDa)

9.51

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 163
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 47, 99
Aor13HI TCCGGA 1 cut(s) 20
AoxI GGCC 2 cut(s) 140, 154
AsiGI ACCGGT 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 166, 203
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 166, 203
BccI CCATC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 47, 99
Bme1390I CCNGG 2 cut(s) 97, 174
Bme18I GGWCC 2 cut(s) 166, 203
BmgT120I GGNCC 2 cut(s) 166, 203
BmrFI CCNGG 2 cut(s) 97, 174
BoxI GACNNNNGTC 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 47
BsaWI WCCGGW 2 cut(s) 20, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 20
BseBI CCWGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 81, 169
BseLI CCNNNNNNNGG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 101, 117
BshFI GGCC 2 cut(s) 142, 156
BshTI ACCGGT 1 cut(s) 200
BsiSI CCGG 6 cut(s) 21, 157, 173, 185, 201, 206
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 47, 99
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 2 cut(s) 142, 156
Bso31I GGTCTC 1 cut(s) 47
Bsp13I TCCGGA 1 cut(s) 20
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 2 cut(s) 142, 156
BspEI TCCGGA 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 44
BstF5I GGATG 2 cut(s) 81, 169
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 2 cut(s) 47, 99
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 97
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 95, 172
BsuRI GGCC 2 cut(s) 142, 156
BtsCI GGATG 2 cut(s) 81, 169
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 166, 203
CpoI CGGWCCG 1 cut(s) 203
CspAI ACCGGT 1 cut(s) 200
CspI CGGWCCG 1 cut(s) 203
CviJI RGCY 5 cut(s) 95, 142, 156, 188, 215
CviKI_1 RGCY 5 cut(s) 95, 142, 156, 188, 215
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 166, 203
EcoRII CCWGG 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 99
FaiI YATR 2 cut(s) 137, 153
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FbaI TGATCA 1 cut(s) 127
FokI GGATG 2 cut(s) 88, 156
HaeIII GGCC 2 cut(s) 142, 156
HapII CCGG 6 cut(s) 21, 157, 173, 185, 201, 206
HpaII CCGG 6 cut(s) 21, 157, 173, 185, 201, 206
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 21, 46, 131
HpyAV CCTTC 4 cut(s) 27, 52, 157, 205
Kpn2I TCCGGA 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 9 cut(s) 34, 53, 82, 109, 170, 186, 198, 214, 219
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 61, 172
MluCI AATT 1 cut(s) 223
MnlI CCTC 4 cut(s) 45, 66, 79, 95
MroI TCCGGA 1 cut(s) 20
MseI TTAA 1 cut(s) 226
MspI CCGG 6 cut(s) 21, 157, 173, 185, 201, 206
MspR9I CCNGG 2 cut(s) 97, 174
MvaI CCWGG 1 cut(s) 97
NciI CCSGG 1 cut(s) 174
NdeII GATC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 32
PceI AGGCCT 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 172
PinAI ACCGGT 1 cut(s) 200
PshAI GACNNNNGTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 2 cut(s) 166, 203
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 226
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 2 cut(s) 166, 203
ScrFI CCNGG 2 cut(s) 97, 174
SetI ASST 1 cut(s) 168
SinI GGWCC 2 cut(s) 166, 203
Sse9I AATT 1 cut(s) 223
SseBI AGGCCT 1 cut(s) 142
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 95, 172
TasI AATT 1 cut(s) 223
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 166, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.